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A chicken embryo gene expression database
 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdHoxd10.Shah.2004
 NCBIEnsembl
Gene NameHOXD8Hox-D10
AliasesCHOX M, CHOX M product|homeo box D8|homeobox protein Hox-D8 
Gene Descriptionhomeobox D8PREDICTED: Gallus gallus similar to homeobox D10 (LOC771246), mRNA.
Gene Ontologyshow
GO:0003700 transcription factor activity IEA
GO:0005634 nucleus IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007275 multicellular organismal development IEA
GO:0043565 sequence-specific DNA binding IEA
NCBI Nucleotide HitNM_207177 show details
scoreevaluealignment lengthdescription
6410.0641Gallus gallus homeobox D8 (HOXD8), mRNA
CitationShah, V, Drill, E, Lance-Jones, C. Ectopic Expression of Hoxd10 in Thoracic Spinal Segments Induces Motoneurons With a Lumbosacral Molecular Profile and Axon Projections to the Limb. Dev Dyn. 2004 Sep;231(1):43-56.
CopyrightCopyright © 2004 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Paperindicates: Experiments were carried out with a construct made by cloning a fullength chicken Hoxd10 (kindly provided by C. Tabin). The sequence below was obtained from NCBI (acc # NM_207177.1), which is currently the closest match to HoxD10 in the database.
Complete Sequenceshow
CCCTGCAGCGGGGTTACCTGTCACGGGGAGCCCGCTAAATTTTACGGATACGATAACTTACAGAGACAGCAGATTTTTA
CGACACAGCAAGAGGCCGAGCTGGTACAATATCCTGACTGTAAATCGTCCAGTGCTAATATTGGCGAGGAACCAGACCA
CTTAAATCAGAGCTCGTCTCCCGCTCAAATGTTTCCCTGGATGAGACCGCAAGCAGCGCCCGGGAGGAGGAGAGGGCGG
CAGACGTACAGCCGCTTCCAGACGCTGGAGCTGGAGAAGGAGTTTCTCTTTAACCCCTATCTGACCAGGAAGAGACGAA
TCGAGGTGTCCCACGCCCTAGGACTCACCGAGCGGCAGGTAAAGATCTGGTTTCAGAACAGGAGGATGAAGTGGAAAAA
GGAGAACAACAAGGACAAATTCCCCGCTTCCAAGCAGGAGGGAAAGGAAGGGGAGGCCAAAAAGGAAACACATGATCTG
GAAGACGACAGAGCCGAAAGCCACACGAATTAAATTAATTTTGCCCTAAAAGCCTTTGTGAAGGGCCATCGGGAACGAG
GAGCCCACGGCCGCAGCTCCGGGCCCGTCCCCGCCGTGTGCGTCCCGCGGGGCCGCGTCCCGCCCCACTCCGCGCCGTG
TGGGTTCGGGTTTGGGTCCAACTGCATCCGGAGCGATCTCCAGATGTCCGCTCGTCCGCTCCTCCTGGAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24

Limb Buds

Tail

 
25-28
stage 28

Spinal Cord

Tail

lumbosacral cord

Probe 2

GEISHA IdHoxd10.Winslow.2007
 NCBIEnsembl
Gene NameHOXD10Hox-D10
Gene Descriptionhomeobox D10PREDICTED: Gallus gallus similar to homeobox D10 (LOC771246), mRNA.
NCBI Nucleotide HitXM_001234538 show details
scoreevaluealignment lengthdescription
6630.0663PREDICTED: Gallus gallus similar to homeobox D10 (LOC771246), mRNA
Ensembl Genome Map
contig view
CitationWinslow BB, Takimoto-Kimura R, Burke AC. Global patterning of the vertebrate mesoderm. Dev Dyn. 2007 Sep;236(9):2371-81.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538).
Complete Sequenceshow
ATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCTACCGTCTCTGGCTAAAAGAG
AAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGTTGGACAGATCCGAACAGATC
TTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATATTAAGGAAGAAAGCAATTGC
TGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAGGCTGGTGTCTGAATCATGCC
CCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCCACTGGGAAAACCCAAGAGTA
CAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCTCCAAACCGCAGCTATCTTCT
CAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAAAGTCTCTCAAGTGGAAAGTC
CCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCCAGCCCCGAGGTCCAGGAGAA
GGAGACTAAAGGTCTGTATTACCGAGCTTGA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25

Leg

Tail

Wing

 
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