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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdSox8.McKeown.2005
 NCBIEnsembl
Gene NameSOX8SOX8_CHICK
AliasesSOX8 transcription factor 
Gene DescriptionSRY (sex determining region Y)-box 8Transcription factor SOX-8. [Source:Uniprot/SWISSPROT;Acc:P57074]
Gene Ontologyshow
GO:0001701 in utero embryonic development IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IEA
GO:0005634 nucleus IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007422 peripheral nervous system development IEA
GO:0045165 cell fate commitment IEA
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA
GO:0048469 cell maturation IEA
show
GO:0001701 in utero embryonic development IEA
GO:0003677 DNA binding IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IEA
GO:0005634 nucleus IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007422 peripheral nervous system development IEA
GO:0045165 cell fate commitment IEA
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA
GO:0048469 cell maturation IEA
NCBI Nucleotide HitNM_204731 show details
scoreevaluealignment lengthdescription
16130.01613Gallus gallus SRY (sex determining region Y)-box 8 (SOX8), mRNA
Ensembl Genome Map
contig view
CitationMcKeown S, Lee V, Bronner-Fraser M, Newgreen D, Farlie P. Sox10 Overexpression Induces Neural Crest-Like Cells From All Dorsoventral Levels of the Neural Tube but Inhibits Differentiation. Dev Dyn. 2005 Jun;233(2):430-44.
CopyrightCopyright © 2005 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AF228664).
Complete Sequenceshow
ATGCTCAACATGACCGAGGAGCACGACAAAGCGCTGGAGGCTCCGTGCAGCCCCGCGGGCACCACCAGCTCCATGTCCC
ACGTGGACTCGGACTCCGACTCCCCGCTGTCCCCCGCCGGCTCCGAGGGCCTGGGCTGCGCCCCCGCGCCCGCCCCGCG
CCCCCCCGGTGCCGCCCCGCTGGGCGCTAAGGTGGATGCGGCCGAGGTGGACGAGCGCTTCCCCGCCTGCATCCGCGAC
GCCGTCTCGCAGGTGCTGAAGGGCTACGACTGGAGCCTGGTGCCCATGCCCGTGCGCGGCAACGGGTCGCTCAAGGCGA
AGCCGCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGGCGCAGGCCGCCCGCAGGAAGCTGGCCGACCAATACCC
GCACCTGCACAACGCCGAGCTCAGCAAGACGCTGGGCAAGCTCTGGCGTTTGTTAAGCGAAAATGAGAAACGTCCCTTT
GTGGAAGAAGCTGAGCGGCTCAGGGTCCAGCACAAAAAGGATCACCCGGATTATAAATACCAGCCCCGGAGGAGGAAAA
GCGTGAAAGCTGGGCAGAGCGACTCCGACTCCGGGGCCGAGCTCAGCCATCATGCCGGCACCCAGATCTACAAGGCTGA
CAGCGGGCTGGGGGGCATGGCTGATGGCCACCACCACGGCGAGCATGCAGGCCAGCCCCATGGGCCGCCCACGCCGCCC
ACGACCCCCAAAACTGACCTGCACCACGGCAGCAAGCAGGAGCTGAAGCATGAGGGCCGCCGCCTCGTGGAGAGCGGCC
GCCAGAACATTGACTTCAGCAACGTGGACATTTCAGAGCTGAGCAGCGAGGTCATCAACAACATGGAGACCTTCGATGT
GCACGAGTTTGACCAGTACCTGCCGCTCAATGGCCATACTGCCATGCCGGCTGACCACGGCCCCGGTGCTGGCTTCTAC
AGCACGTCCTACTCCCACTCGGCAGCAGGCGCCGGCGGGGCTGGCCAGGTGTGGACTCACAAGAGCCCGGCCTCGGCAT
CGCCGTCATCGGCTGATTCGGGCCAGCAAAGGCCGCACATCAAAACGGAGCAGCTGAGCCCCAGCCACTACAGCGACCA
GTCCCACGGCTCCCCTGCGCACTCTGACTACGGCTCCTACAGCACCCAGGCCTGTGCCACCACTGCCTCCACCGCCACA
GCTGCCGCCTCCTTCTCCAGCTCCCAGTGCGACTACACGGACCTGCAGAGCTCCAACTACTACAACCCCTATCCCGGTT
ACCCCTCCAGCATCTACCAGTACCCCTACTTCCACTCCTCACGGCGTCCCTACGCGACGCCCATCCTCAACGGCTTGTC
CATCCCGCCGGCCCACAGCCCCACCGCTAACTGGGACCAGCCGGTCTACACAACCCTGACGAGGCCTTAAAAAGGATGC
GTGGAGCCTCCCCCAGGGCTTCCCCGACGTATGCACTAATGAAGGAACGAAGAGGAAGAACGTGGAGTGCCGCGATTGT
TTCCCAAGTGCCTCCTGAGCCGCTGGGAACTCTGCTCGTTGCGACTGGGTGTCCCCTTGCTTTGAAACTCTCCAAAAGG
ACAGAGCTCTATTTTTCTTTAATTAATAAAATT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10

Neural Crest

 
13-18
stage 18

Limb Buds

Neural Crest

 

Probe 2

GEISHA Idpgm2n.pk009.c2
 NCBIEnsembl
Gene NameSOX8SOX8_CHICK
AliasesSOX8 transcription factor 
Gene DescriptionSRY (sex determining region Y)-box 8Transcription factor SOX-8. [Source:Uniprot/SWISSPROT;Acc:P57074]
Gene Ontologyshow
GO:0001701 in utero embryonic development IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IEA
GO:0005634 nucleus IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007422 peripheral nervous system development IEA
GO:0045165 cell fate commitment IEA
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA
GO:0048469 cell maturation IEA
show
GO:0001701 in utero embryonic development IEA
GO:0003677 DNA binding IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IEA
GO:0005634 nucleus IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007422 peripheral nervous system development IEA
GO:0045165 cell fate commitment IEA
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA
GO:0048469 cell maturation IEA
NCBI Nucleotide HitNM_204731 show details
scoreevaluealignment lengthdescription
2371e-131241Gallus gallus SRY (sex determining region Y)-box 8 (SOX8), mRNA
Ensembl Genome Map
contig view
5' Sequenceshow
GGAATTCTATTTGGCAAAGGGATGAAAAGTGGCATTTTAAATGGGATGGGGGGGATGTCTCGTCCGCTTGTCAATATTG
GTAAGGATGTGCTTTTTTTCTGCCTCTATAACTGATATTTTAACACGTTTTTGCAGTAGGCTTTTGTTTTTTTGGTGCT
ACGGCAAATTTGTATTGAACTCTTTGGTCAGTGCAGTGGGGATGTGAGTTGGAAAATAAACTGAAAACTTCCAGGGAAA
AGACATTAATTTTGGATTTTTCTTTTTCCTCTTTTTTTTTTTTTTTTTTTAAATCCATCCCAAACCAGTTTGTTAAGCG
AAAATGAGAAACGTCCCTTTGTGGAAGAAGCTGAGCGGCTCAGGGTCCAGCACAAAAAGGATCACCCGGATTATAAATA
CCAGCCCCGGAGGAGGAAAAGCGTGAAAGCTGGGCAGAGCGACTCCGACTCCGGGGCCGAGCTCAGCCATCACGCCGGC
ACCCAGATCTACAAGGCTGACAGCGGGCTGGGGGGCATGGCTGATGGCCACCACCACGGCGAGCATGCAGGTAAAGGGT
CCTGGGGGCTGAGAACTGCTCATTGTGGGGGTGTTGTTTTGTGACTCGAACCCACCAGTGGGCACAGGCATGTCTGCAC
GCTCAAAGCCTGTGCAGCGTGGGACTGGGGGGCAGCCAAAAGCAGAGCCATTGCTCTAAGAGCTGAGGTTTTGCATCGG
GTGGTGTGCGTGGCCATGCATTTAGTTAATAAATGCAACCAGAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 10

Neural Crest

 
13-18
stage 13

Ear/Otic Placcode

Face Mesenchyme

otic placcode

19-24
stage 19
stage 21
stage 21
stage 23

Ear/Otic Placcode

Face Mesenchyme

Lateral Plate Mesoderm

Limb Buds

Myotome

Nasal Placcode/Nerve

Pharyngeal Arches and Clefts

Somites

Spinal Ganglia and Nerves

Stomach

Wing Ectoderm

Wing Mesenchyme

 
25
stage 25
stage 25

Forebrain

Leg Bones

Leg Mesenchyme

Midbrain

 

Probe 3

GEISHA IdSox8.Bell.2000
 NCBIEnsembl
Gene NameSOX8SOX8_CHICK
AliasesSOX8 transcription factor 
Gene DescriptionSRY (sex determining region Y)-box 8Transcription factor SOX-8. [Source:Uniprot/SWISSPROT;Acc:P57074]
Gene Ontologyshow
GO:0001701 in utero embryonic development IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IEA
GO:0005634 nucleus IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007422 peripheral nervous system development IEA
GO:0045165 cell fate commitment IEA
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA
GO:0048469 cell maturation IEA
show
GO:0001701 in utero embryonic development IEA
GO:0003677 DNA binding IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IEA
GO:0005634 nucleus IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0007422 peripheral nervous system development IEA
GO:0045165 cell fate commitment IEA
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IEA
GO:0048469 cell maturation IEA
NCBI Nucleotide HitNM_204731 show details
scoreevaluealignment lengthdescription
3770.0381Gallus gallus SRY (sex determining region Y)-box 8 (SOX8), mRNA
Ensembl Genome Map
contig view
CitationBell KM, Western PS, Sinclair AH. SOX8 expression during chick embryogenesis. Mech Dev. 2000 Jun;94(1-2):257-60.
CopyrightCopyright © 2000 Elsevier Science Ireland Ltd. All rights reserved.
Complete Sequenceshow
GAGCTCCAACTACTACAACCCCTATCCCGGTTACCCCTCCAGCATCTACCAGTACCCCTACTTCCACTCCTCACGGCGT
CCCTACGCGACGCCCATCCTCAACGGCTTGTCCATCCCGCCGGCCCACAGCCCCACCGCTAACTGGGACCAGCCGGTCT
ACACAACCCTGACGAGGCCTTAAAAAGGATGCGTGGAGCCCCCCCCAGGGCTTCCCCGACGTATGCACTAATGAAGGAA
CGAAGAGGAAGAACGTGGAGTGCCGCGATTGTTTCCCAAGTGCCTCCTGAGCCGCTGGGAACTCTGCTCGTTGCGACTG
GGTGTCCCCTTGCTTTGAAACTCTCCAAAAGGACAGAGCTCTATTTTTCTTTAATTAATAAAATT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 11

Unlabeled

 
19-24
stage 20
stage 21
stage 24
stage 24
stage 24

Dermatome

Face Mesenchyme

Limb Buds

Myotome

Somites

Spinal Ganglia and Nerves

Tail

Wing Mesenchyme

 
25-30
stage 27
stage 27
stage 27

Dermatome

Limb Buds

Myotome

Spinal Cord

Spinal Ganglia and Nerves

 
31-32
stage 31
stage 31
stage 31
stage 32
stage 32
stage 32

Duodenum

Epicardium

Heart

Leg

Limb Buds

Pancreas

 
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