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Gene Expression Report
Probe 1| GEISHA Id | SCX.Mella.2004 | | | NCBI | Ensembl | | Gene Name | SCX | | | Gene Description | class II bHLH protein scleraxis | | | Gene Ontology | show | | | NCBI Nucleotide Hit | NM_204253 show details| score | evalue | alignment length | description |
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| 1133 | 0.0 | 1133 | Gallus gallus class II bHLH protein scleraxis (SCX), mRNA |
| | Ensembl Genome Map |  contig view | | Citation | Mella S, Soula C, Morello D, Crozatier M, Vincent A. Expression patterns of the coe/ebf transcription factor genes during chicken and mouse limb development. Gene Expr Patterns. 2004 Sep;4(5):537-42. | | Copyright | Reprinted with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved. | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204253). | | Complete Sequence | show GGCCGCGGAGGCGGCGGCCGTGCGCGGTCCTTAAGCCGTCGGGCGAGGGGATACGGGGGCACGGGGGTACGGGGACCCC CCTCCGGCAGCGAGCTGCCCCCCGGCGGTGCCGGGGCTGTGGCATGCGGCGGGGCTGAGGGCGGCGGTGGCGGCGGTGC GCGCTGTGCCGGCTGCTCGCCATGTCCTTCGCCATGCTGCGCCCCGCGGCCGGCCGTTACCTGTACCCCGAGATCAGCA TGCTGTCGGAGGACGAGGAGAACGGCAGCGAGAGCTCGGGCTCCGACGAGAAGCCCTTCCACCTGGACGCCGACGGCTT CGGCATCAAAGCCGGCAAGAGGAGGAGCGGCAAGAAAGCCGGGCGGCTGCACCGCGAGCCCCGGCAGCGGCACACGGCC AACGCGCGAGAGCGCGACCGCACCAACAGCGTCAACACCGCCTTCACGGCGCTGCGCACCCTCATCCCCACCGAGCCGG CCGATAGGAAGCTGTCCAAGATCGAGACGCTGCGCCTGGCCTCCAGCTACATCTCCCACCTGGGCAACGTGCTGCTGGT GGGAGAGGCGTGCGGCGACGGGCAGCCGTGCCACACCAGCCCGGCTTTCTTCCACCACGGCGGAGGAGGCGGCAGCCCC CCGCCACGCGACTCCGAGAACTCCCAGCCCAAACAGATCTGCACTTTCTGCCTCAGCAACCAGAGGAAGCTGAGTAAAG ACCGCGACAGGAAGACGGCGATCCGGAGCTAGGCGCTCCCGGGGAAGGACGGCACGGAGGAGCGGAAGGACGGACGGAC GGACGGAAAAGCCACACACACCGAACCACGGACACACTCCCGTCTTCACCCCGCTGCCAGGGACAGGACCCTGCCCCTA TGGGGCCGTGAGGCTGGGCTGTGGGGACGCCCCCCGCTGGGGACTGAGCCAAGCTGGGGACGCTGCCGCCGGGACCGAC CGCTGCCGTGCTGTTCCCCTCCAGCTTTGAGCCACGCCATCCCCTGAACTGAGGCCCGGGGTGCTGCATTTGTTGAGTT TAATCAATACATGCTGGTGTTTCATGTCATTGATACGATAATATAAAGCCTGAGCAGTTCGTATAATTAAAAATGAGTA CGGTTCAAAAAAAAAAAAAAAAAAAAA |
Probe 2| GEISHA Id | pgm2n.pk008.n15 | | | NCBI | Ensembl | | Gene Name | SCX | | | Gene Description | class II bHLH protein scleraxis | | | Gene Ontology | show | | | NCBI Nucleotide Hit | NM_204253 show details| score | evalue | alignment length | description |
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| 472 | 0.0 | 480 | Gallus gallus class II bHLH protein scleraxis (SCX), mRNA |
| | Comments | No expression detected between stage 5-20. | | 5' Sequence | show GATGCACATGGTGCCGGCGGGGGACGCGGCGGCCGTGCGCGGTCCTTAAGCCGTCGGGCGAGGGGATACGGGGGCACGG GGGTACGGGGACCCCCCTCCGGCAGCGAGCTGCCCCCCGGCGGTGCCGGGGCTGTGGCATGCGGCGGGGCTGAGGGCGG CGGTGGCGGCGGTGCGCGCTGTGCCGGCTGCTCGCCATGTCCTTCGCCATGCTGCGCCCCGCGGCCGGCCGTTACCTGT ACCCCGAGATCAGCATGCTGTCGGAGGACGAGGAGAACGGCAGCGAGAGCTCGGGCTCCGACGAGAAGCCCTTCCACCT GGACGCCGACGGCTTCGGCATCAAAGCCGGCAAGAGGAGGAGCGGCAAGAAAGCCGGGCGGCTGCACCGCGAGCCCCGG CAGCGGCACACGGCCAACGCGCGAGAGCGCGACCGCTCCAACAGCGTCAACACCGCCTTCACGGCGCTGCTCACCCTCA TCCCCACCGAGCCGGCCGATAGGAAGCTGTC |
Probe 3| GEISHA Id | Scleraxis.Lincoln.2004 | | | NCBI | Ensembl | | Gene Name | SCX | | | Gene Description | class II bHLH protein scleraxis | | | Gene Ontology | show | | | NCBI Nucleotide Hit | NM_204253 show details| score | evalue | alignment length | description |
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| 1113 | 0.0 | 1113 | Gallus gallus class II bHLH protein scleraxis (SCX), mRNA |
| | Ensembl Genome Map |  contig view | | Citation | Lincoln J, Alfieri CM, Yutzey KE. Development of heart valve leaflets and supporting apparatus in chicken and mouse embryos. Dev Dyn. 2004 Jun;230(2):239-50. | | Copyright | Wiley-Liss, Inc. 2004 | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from GenBank (acc # NM_204253). Sequence is not found in present chicken genome builds. | | Complete Sequence | show GGCCGCGGAGGCGGCGGCCGTGCGCGGTCCTTAAGCCGTCGGGCGAGGGGATACGGGGGCACGGGGGTACGGGGACCCC CCTCCGGCAGCGAGCTGCCCCCCGGCGGTGCCGGGGCTGTGGCATGCGGCGGGGCTGAGGGCGGCGGTGGCGGCGGTGC GCGCTGTGCCGGCTGCTCGCCATGTCCTTCGCCATGCTGCGCCCCGCGGCCGGCCGTTACCTGTACCCCGAGATCAGCA TGCTGTCGGAGGACGAGGAGAACGGCAGCGAGAGCTCGGGCTCCGACGAGAAGCCCTTCCACCTGGACGCCGACGGCTT CGGCATCAAAGCCGGCAAGAGGAGGAGCGGCAAGAAAGCCGGGCGGCTGCACCGCGAGCCCCGGCAGCGGCACACGGCC AACGCGCGAGAGCGCGACCGCACCAACAGCGTCAACACCGCCTTCACGGCGCTGCGCACCCTCATCCCCACCGAGCCGG CCGATAGGAAGCTGTCCAAGATCGAGACGCTGCGCCTGGCCTCCAGCTACATCTCCCACCTGGGCAACGTGCTGCTGGT GGGAGAGGCGTGCGGCGACGGGCAGCCGTGCCACACCAGCCCGGCTTTCTTCCACCACGGCGGAGGAGGCGGCAGCCCC CCGCCACGCGACTCCGAGAACTCCCAGCCCAAACAGATCTGCACTTTCTGCCTCAGCAACCAGAGGAAGCTGAGTAAAG ACCGCGACAGGAAGACGGCGATCCGGAGCTAGGCGCTCCCGGGGAAGGACGGCACGGAGGAGCGGAAGGACGGACGGAC GGACGGAAAAGCCACACACACCGAACCACGGACACACTCCCGTCTTCACCCCGCTGCCAGGGACAGGACCCTGCCCCTA TGGGGCCGTGAGGCTGGGCTGTGGGGACGCCCCCCGCTGGGGACTGAGCCAAGCTGGGGACGCTGCCGCCGGGACCGAC CGCTGCCGTGCTGTTCCCCTCCAGCTTTGAGCCACGCCATCCCCTGAACTGAGGCCCGGGGTGCTGCATTTGTTGAGTT TAATCAATACATGCTGGTGTTTCATGTCATTGATACGATAATATAAAGCCTGAGCAGTTCGTATAATTAAAAATGAGTA CGGTTCA |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 31-36 |  | | stage 36 | | Heart | |
Probe 4| GEISHA Id | Scleraxis.Manfroid.2007 | | | NCBI | Ensembl | | Gene Name | SCX | | | Gene Description | class II bHLH protein scleraxis | | | Gene Ontology | show | | | NCBI Nucleotide Hit | NM_204253 show details| score | evalue | alignment length | description |
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| 1112 | 0.0 | 1112 | Gallus gallus class II bHLH protein scleraxis (SCX), mRNA |
| | Ensembl Genome Map |  contig view | | Complete Sequence | show GGCCGCGGAGGCGGCGGCCGTGCGCGGTCCTTAAGCCGTCGGGCGAGGGGATACGGGGGCACGGGGGTACGGGGACCCC CCTCCGGCAGCGAGCTGCCCCCCGGCGGTGCCGGGGCTGTGGCATGCGGCGGGGCTGAGGGCGGCGGTGGCGGCGGTGC GCGCTGTGCCGGCTGCTCGCCATGTCCTTCGCCATGCTGCGCCCCGCGGCCGGCCGTTACCTGTACCCCGAGATCAGCA TGCTGTCGGAGGACGAGGAGAACGGCAGCGAGAGCTCGGGCTCCGACGAGAAGCCCTTCCACCTGGACGCCGACGGCTT CGGCATCAAAGCCGGCAAGAGGAGGAGCGGCAAGAAAGCCGGGCGGCTGCACCGCGAGCCCCGGCAGCGGCACACGGCC AACGCGCGAGAGCGCGACCGCACCAACAGCGTCAACACCGCCTTCACGGCGCTGCGCACCCTCATCCCCACCGAGCCGG CCGATAGGAAGCTGTCCAAGATCGAGACGCTGCGCCTGGCCTCCAGCTACATCTCCCACCTGGGCAACGTGCTGCTGGT GGGAGAGGCGTGCGGCGACGGGCAGCCGTGCCACACCAGCCCGGCTTTCTTCCACCACGGCGGAGGAGGCGGCAGCCCC CCGCCACGCGACTCCGAGAACTCCCAGCCCAAACAGATCTGCACTTTCTGCCTCAGCAACCAGAGGAAGCTGAGTAAAG ACCGCGACAGGAAGACGGCGATCCGGAGCTAGGCGCTCCCGGGGAAGGACGGCACGGAGGAGCGGAAGGACGGACGGAC GGACGGAAAAGCCACACACACCGAACCACGGACACACTCCCGTCTTCACCCCGCTGCCAGGGACAGGACCCTGCCCCTA TGGGGCCGTGAGGCTGGGCTGTGGGGACGCCCCCCGCTGGGGACTGAGCCAAGCTGGGGACGCTGCCGCCGGGACCGAC CGCTGCCGTGCTGTTCCCCTCCAGCTTTGAGCCACGCCATCCCCTGAACTGAGGCCCGGGGTGCTGCATTTGTTGAGTT TAATCAATACATGCTGGTGTTTCATGTCATTGATACGATAATATAAAGCCTGAGCAGTTCGTATAATTAAAAATGAGTA CGGTTC |
Probe 5| GEISHA Id | Scleraxis.Tylzanowski.2003 | | | NCBI | Ensembl | | Gene Name | SCX | | | Gene Description | class II bHLH protein scleraxis | | | Gene Ontology | show | | | NCBI Nucleotide Hit | NM_204253 show details| score | evalue | alignment length | description |
|---|
| 1133 | 0.0 | 1133 | Gallus gallus class II bHLH protein scleraxis (SCX), mRNA |
| | Ensembl Genome Map |  contig view | | Citation | Tylzanowski P, De Valck D, Maes V, Peeters J, Luyten FP. Zfhx1a and Zfhx1b mRNAs have non-overlapping expression domains during chick and mouse midgestation limb development. Gene Expr Patterns. 2003 Mar;3(1):39-42. Erratum in: Gene Expr Patterns. 2003 Jun;3(3):383. | | Copyright | Copyright © 2003 Elsevier B.V. All rights reserved. | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204253). | | Complete Sequence | show GGCCGCGGAGGCGGCGGCCGTGCGCGGTCCTTAAGCCGTCGGGCGAGGGGATACGGGGGCACGGGGGTACGGGGACCCC CCTCCGGCAGCGAGCTGCCCCCCGGCGGTGCCGGGGCTGTGGCATGCGGCGGGGCTGAGGGCGGCGGTGGCGGCGGTGC GCGCTGTGCCGGCTGCTCGCCATGTCCTTCGCCATGCTGCGCCCCGCGGCCGGCCGTTACCTGTACCCCGAGATCAGCA TGCTGTCGGAGGACGAGGAGAACGGCAGCGAGAGCTCGGGCTCCGACGAGAAGCCCTTCCACCTGGACGCCGACGGCTT CGGCATCAAAGCCGGCAAGAGGAGGAGCGGCAAGAAAGCCGGGCGGCTGCACCGCGAGCCCCGGCAGCGGCACACGGCC AACGCGCGAGAGCGCGACCGCACCAACAGCGTCAACACCGCCTTCACGGCGCTGCGCACCCTCATCCCCACCGAGCCGG CCGATAGGAAGCTGTCCAAGATCGAGACGCTGCGCCTGGCCTCCAGCTACATCTCCCACCTGGGCAACGTGCTGCTGGT GGGAGAGGCGTGCGGCGACGGGCAGCCGTGCCACACCAGCCCGGCTTTCTTCCACCACGGCGGAGGAGGCGGCAGCCCC CCGCCACGCGACTCCGAGAACTCCCAGCCCAAACAGATCTGCACTTTCTGCCTCAGCAACCAGAGGAAGCTGAGTAAAG ACCGCGACAGGAAGACGGCGATCCGGAGCTAGGCGCTCCCGGGGAAGGACGGCACGGAGGAGCGGAAGGACGGACGGAC GGACGGAAAAGCCACACACACCGAACCACGGACACACTCCCGTCTTCACCCCGCTGCCAGGGACAGGACCCTGCCCCTA TGGGGCCGTGAGGCTGGGCTGTGGGGACGCCCCCCGCTGGGGACTGAGCCAAGCTGGGGACGCTGCCGCCGGGACCGAC CGCTGCCGTGCTGTTCCCCTCCAGCTTTGAGCCACGCCATCCCCTGAACTGAGGCCCGGGGTGCTGCATTTGTTGAGTT TAATCAATACATGCTGGTGTTTCATGTCATTGATACGATAATATAAAGCCTGAGCAGTTCGTATAATTAAAAATGAGTA CGGTTCAAAAAAAAAAAAAAAAAAAAA |
Probe 6| GEISHA Id | scleraxis.zhao.2007 | | | NCBI | Ensembl | | Gene Name | SCX | | | Gene Description | class II bHLH protein scleraxis | | | Gene Ontology | show | | | NCBI Nucleotide Hit | NM_204253 show details| score | evalue | alignment length | description |
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| 491 | 0.0 | 491 | Gallus gallus class II bHLH protein scleraxis (SCX), mRNA |
| | Ensembl Genome Map |  contig view | | Citation | Zhao B, Etter L, Hinton RB Jr, Benson DW. BMP and FGF regulatory pathways in semilunar valve precursor cells. Dev Dyn. 2007 Apr;236(4):971-80. | | Copyright | Copyright © 2007 Wiley-Liss, Inc. | | Complete Sequence | show GCGCGACCGCACCAACAGCGTCAACACCGCCTTCACGGCGCTGCGCACCCTCATCCCCACCGAGCCGGCCGATAGGAAG CTGTCCAAGATCGAGACGCTGCGCCTGGCCTCCAGCTACATCTCCCACCTGGGCAACGTGCTGCTGGTGGGAGAGGCGT GCGGCGACGGGCAGCCGTGCCACACCAGCCCGGCTTTCTTCCACCACGGCGGAGGAGGCGGCAGCCCCCCGCCACGCGA CTCCGAGAACTCCCAGCCCAAACAGATCTGCACTTTCTGCCTCAGCAACCAGAGGAAGCTGAGTAAAGACCGCGACAGG AAGACGGCGATCCGGAGCTAGGCGCTCCCGGGGAAGGACGGCACGGAGGAGCGGAAGGACGGACGGACGGACGGAAAAG CCACACACACCGAACCACGGACACACTCCCGTCTTCACCCCGCTGCCAGGGACAGGACCCTGCCCCTATGGGGCCGTGA GGCTGGGCTGTGGGGAC |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 25-30 |  | | stage 30 | | Valves | | | 31-37 |  | | stage 37 | | Valves | |
Probe 7| GEISHA Id | Scx.Reijntjes.2007 | | | NCBI | Ensembl | | Gene Name | SCX | | | Gene Description | class II bHLH protein scleraxis | | | Gene Ontology | show | | | NCBI Nucleotide Hit | NM_204253 show details| score | evalue | alignment length | description |
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| 509 | 0.0 | 541 | Gallus gallus class II bHLH protein scleraxis (SCX), mRNA |
| | Ensembl Genome Map |  contig view | | Citation | Reijntjes S, Stricker S, Mankoo BS. A comparative analysis of Meox1 and Meox2 in the developing somites and limbs of the chick embryo. Int J Dev Biol.(2007); 51(8:753-9. | | Copyright | Reprinted from Int. J. Dev. Biol., 51, Reijntjes S, Stricker S, Mankoo BS, A
comparative analysis of Meox1 and Meox2 in the developing somites and limbs of
the chick embryo, 753-9, Copyright © 2007 UBC Press, with permission. All rights
reserved. | | Complete Sequence | show CGCCGACGGCTTCGGCATCAAAGCCGGCAAGAGGAGGAGCGGCAAGAAAGCCGGGCGGCTGCACCGCGAGCCCCGGCAG CGGCACACGGCCAACGCGCGAGAGCGCGACCGCACCAACAGCGTCAACACCGCCTTCACGGCGCTGCGCACCCTCATCC CCACCGAGCCGGCCGATAGGAAGCTGTCCAAGATCGAGACGCTGCGCCTGGCCTCCAGCTACATCTCCCACCTGGGCAA CGTGCTGCTGGTGGGAGAGGCGTGCGGCGACGGGCAGCCGTGCCACACCAGCCCGGCTTTCTTCCACCACGGCGGAGGG AGGCGGCAGCCCCCCGCCACGCGACTCCGAGAACTCCCAGCCCAAACAGATCTGCACTTTCTGCCTCAGCAACCAGAGG AAGCTGAGTAAAGACCGCGACAGGAAGACGGCGATCCGGAGCTAGGCGCTCCCGGGGAAGGACGGCACGGAGGAGCGGA ACGGACGGACGGACGGATGGAAAAGCCACAACACCGAACCACGGACACACTCCCGTCTTCAACCCGACTGCCAAGGGAC AGG |
Probe 8| GEISHA Id | Scx.Shukunami.2006 | | | NCBI | Ensembl | | Gene Name | SCX | | | Gene Description | class II bHLH protein scleraxis | | | Gene Ontology | show | | | NCBI Nucleotide Hit | NM_204253 show details| score | evalue | alignment length | description |
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| 1133 | 0.0 | 1133 | Gallus gallus class II bHLH protein scleraxis (SCX), mRNA |
| | Ensembl Genome Map |  contig view | | Citation | Shukunami C, Takimoto A, Oro M, Hiraki Y. Scleraxis positively regulates the expression of tenomodulin, a differentiation marker of tenocytes. Dev Biol. 2006 Oct 1;298(1):234-47. Epub 2006 Jun 27. | | Copyright | Reprinted from Developmental Biology, 298,Chisa Shukunami,Aki Takimoto, Miwa Oro, and Yuji Hiraki, Scleraxis positively regulates the expression of tenomodulin, a differentiation marker of tenocytes, 234-247, Copyright 2006, with permission from Elsevier.
Copyright © 2006 Elsevier B.V. All rights reserved. | | Comments | Authors said: "he Scx RNA probe was generated from its entire coding sequence in GenBank (AF505881), and from pcScx3′ UTR, which was a generous gift from Dr. Tabin." Thus the sequence below was obtained from NCBI (acc # NM_204253). | | Complete Sequence | show GGCCGCGGAGGCGGCGGCCGTGCGCGGTCCTTAAGCCGTCGGGCGAGGGGATACGGGGGCACGGGGGTACGGGGACCCC CCTCCGGCAGCGAGCTGCCCCCCGGCGGTGCCGGGGCTGTGGCATGCGGCGGGGCTGAGGGCGGCGGTGGCGGCGGTGC GCGCTGTGCCGGCTGCTCGCCATGTCCTTCGCCATGCTGCGCCCCGCGGCCGGCCGTTACCTGTACCCCGAGATCAGCA TGCTGTCGGAGGACGAGGAGAACGGCAGCGAGAGCTCGGGCTCCGACGAGAAGCCCTTCCACCTGGACGCCGACGGCTT CGGCATCAAAGCCGGCAAGAGGAGGAGCGGCAAGAAAGCCGGGCGGCTGCACCGCGAGCCCCGGCAGCGGCACACGGCC AACGCGCGAGAGCGCGACCGCACCAACAGCGTCAACACCGCCTTCACGGCGCTGCGCACCCTCATCCCCACCGAGCCGG CCGATAGGAAGCTGTCCAAGATCGAGACGCTGCGCCTGGCCTCCAGCTACATCTCCCACCTGGGCAACGTGCTGCTGGT GGGAGAGGCGTGCGGCGACGGGCAGCCGTGCCACACCAGCCCGGCTTTCTTCCACCACGGCGGAGGAGGCGGCAGCCCC CCGCCACGCGACTCCGAGAACTCCCAGCCCAAACAGATCTGCACTTTCTGCCTCAGCAACCAGAGGAAGCTGAGTAAAG ACCGCGACAGGAAGACGGCGATCCGGAGCTAGGCGCTCCCGGGGAAGGACGGCACGGAGGAGCGGAAGGACGGACGGAC GGACGGAAAAGCCACACACACCGAACCACGGACACACTCCCGTCTTCACCCCGCTGCCAGGGACAGGACCCTGCCCCTA TGGGGCCGTGAGGCTGGGCTGTGGGGACGCCCCCCGCTGGGGACTGAGCCAAGCTGGGGACGCTGCCGCCGGGACCGAC CGCTGCCGTGCTGTTCCCCTCCAGCTTTGAGCCACGCCATCCCCTGAACTGAGGCCCGGGGTGCTGCATTTGTTGAGTT TAATCAATACATGCTGGTGTTTCATGTCATTGATACGATAATATAAAGCCTGAGCAGTTCGTATAATTAAAAATGAGTA CGGTTCAAAAAAAAAAAAAAAAAAAAA |
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