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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdGDNF.Nagy.2006
 NCBIEnsembl
Gene NameGDNFQ9IAM2_CHICK
Aliasesglial cell line-derived neurotrophic factor long form, GDNF, glial cell derived neurotrophic factor, Official 
Gene Descriptionglial cell derived neurotrophic factorGlial cell line-derived neurotrophic factor short form (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q9IAM2]
Gene Ontologyshow
GO:0001657 ureteric bud development IEA
GO:0001755 neural crest cell migration IEA
GO:0001759 induction of an organ IEA
GO:0001941 postsynaptic membrane organization IEA
GO:0005576 extracellular region IEA
GO:0006916 anti-apoptosis IEA
GO:0007422 peripheral nervous system development IEA
GO:0008083 growth factor activity IEA
GO:0010552 positive regulation of gene-specific transcription from RNA polymerase II promoter IEA
GO:0030432 peristalsis IEA
GO:0031175 neuron projection development IEA
GO:0032770 positive regulation of monooxygenase activity IEA
GO:0042803 protein homodimerization activity IEA
GO:0043524 negative regulation of neuron apoptosis IEA
GO:0048255 mRNA stabilization IEA
GO:0051584 regulation of dopamine uptake IEA
show
GO:0001656 metanephros development IEA
GO:0001657 ureteric bud development IEA
GO:0001759 induction of an organ IEA
GO:0001941 postsynaptic membrane organization IEA
GO:0006916 anti-apoptosis IEA
GO:0007399 nervous system development IEA
GO:0007422 peripheral nervous system development IEA
GO:0008083 growth factor activity IEA
GO:0030432 peristalsis IEA
NCBI Nucleotide HitXM_425018 show details
scoreevaluealignment lengthdescription
3900.0406PREDICTED: Gallus gallus glial cell derived neurotrophic factor (GDNF), mRNA
Ensembl Genome Map
contig view
CitationNagy N, Goldstein AM. Endothelin-3 regulates neural crest cell proliferation and differentiation in the hindgut enteric nervous system. Dev Biol. 2006 May 1;293(1):203-17. Epub 2006 Mar 6.
Copyright"Reprinted from Developmental Biology, 293, Nagy N, Goldstein AM, Endothelin-3 regulates neural crest cell proliferation and differentiation in the hindgut enteric nervous system., 203-17, Copyright (2006), with permission from Elsevier". Copyright © (2006) Elsevier B.V. All rights reserved.
CommentsAccording to the authors: Antisense GDNF RNA probe was generated by amplifying a fragment of GDNF sequence from total RNA prepared from E9 chick gut using Trizol Reagent (Invitrogen). The following oligonucleotide primers were used: upstream primer, 5′-tgccagaggattacccagat-3′; downstream primer, 5′-aggtcatcgtcaaaggctgt-3′.
Complete Sequenceshow
TGCCAGAGGATTACCCAGATCAGTTCGATGAGGTAGTGGACTTTATTCAAGCCACTATTAAGAGACTGAGGAGATCTCC
AGATAAACAGACTCCGATTTTTTCTAGGCGGGAGAGGAACCGGCAAAGTGCAGCCACAAACGTAGAGAATTCCAGCAAA
AAGGGAGGAGGAACCAAAAGGGCAAAAATCGGGGATGTGTCTTAACAGAAATACATTTAAATGTGACTGACTTGGATTT
GGGATAGAAACCAAAGAAGAGCTCATCTTCCGGTATTGCAGTGGATCTTGTGATGCAGTTGAGACCACGTATGACAAAA
TTTTGAAAAACTTAACCAGAAAGAAAAAACTAGTCAATGACAAAGTGAGGCAAGCTTGCTGCAGACCCACAGCCTTTGA
CGATGACCT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 18

Renal

nephrogenic mesenchyme

25-30
stage 26
stage 26
stage 26
stage 30

Hindgut

Stomach

cloaca and cecal primordia

mesenchymal cells

proventriculus

throughout the intestine

31-35
stage 35
stage 35
stage 35

Hindgut

throughout the intestine

Probe 2

GEISHA IdGDNF.Homma.2000
 NCBIEnsembl
Gene NameGDNFQ9IAM2_CHICK
Aliasesglial cell line-derived neurotrophic factor long form, GDNF, glial cell derived neurotrophic factor, Official 
Gene Descriptionglial cell derived neurotrophic factorGlial cell line-derived neurotrophic factor short form (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q9IAM2]
Gene Ontologyshow
GO:0001657 ureteric bud development IEA
GO:0001755 neural crest cell migration IEA
GO:0001759 induction of an organ IEA
GO:0001941 postsynaptic membrane organization IEA
GO:0005576 extracellular region IEA
GO:0006916 anti-apoptosis IEA
GO:0007422 peripheral nervous system development IEA
GO:0008083 growth factor activity IEA
GO:0010552 positive regulation of gene-specific transcription from RNA polymerase II promoter IEA
GO:0030432 peristalsis IEA
GO:0031175 neuron projection development IEA
GO:0032770 positive regulation of monooxygenase activity IEA
GO:0042803 protein homodimerization activity IEA
GO:0043524 negative regulation of neuron apoptosis IEA
GO:0048255 mRNA stabilization IEA
GO:0051584 regulation of dopamine uptake IEA
show
GO:0001656 metanephros development IEA
GO:0001657 ureteric bud development IEA
GO:0001759 induction of an organ IEA
GO:0001941 postsynaptic membrane organization IEA
GO:0006916 anti-apoptosis IEA
GO:0007399 nervous system development IEA
GO:0007422 peripheral nervous system development IEA
GO:0008083 growth factor activity IEA
GO:0030432 peristalsis IEA
NCBI Nucleotide HitXM_425018 show details
scoreevaluealignment lengthdescription
3900.0406PREDICTED: Gallus gallus glial cell derived neurotrophic factor (GDNF), mRNA
Ensembl Genome Map
contig view
CitationHomma S, Oppenheim RW, Yaginuma H, Kimura S. Expression pattern of GDNF, c-ret, and GFRalphas suggests novel roles for GDNF ligands during early organogenesis in the chick embryo. Dev Biol. 2000 Jan 1;217(1):121-37.
CopyrightReprinted with permission from Elsevier. Copyright © 2000 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_425018).
Complete Sequenceshow
ATGTTACAAAGCATTTTTTCTCTTCTTCAAACAGCTAATATGCCAGAGGATTACCCAGATCAGTTCGATGAGGTAGTGG
ACTTTATTCAAGCCACTATTAAGAGACTGAGGAGATCTCCAGATAAACAGACTCCGATTTTTTCTAGGCGGGAGAGGAA
CCGGCAAAGTGCAGCCACAAACGTAGAGAATTCCAGCAAAAAGGGAAGGAGGAACCAAAAGGGCAAAAATCGGGGATGT
GTCTTAACAGAAATACATTTAAATGTGACTGACTTGGATTTGGGATACGAAACCAAAGAAGAGCTCATCTTCCGGTATT
GCAGTGGATCTTGTGATGCAGTTGAGACCACGTATGACAAAATTTTGAAAAACTTAACCAGAAAGAAAAAACTAGTCAA
TGACAAAGTGAGGCAAGCTTGCTGCAGACCCACAGCCTTTGACGATGACCTGTCCTTTTTGGATGATAACCTGGTTTAC
CACATACTGAAAAAACATTCCGCAAAAAGGTGTGGATGTGTCTGA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9

Intermediate Mesoderm

Pharyngeal Arches and Clefts

Pharynx

Pronephrogenic IM

13-18
stage 13
stage 18
stage 18

Allantois

Cranial Ganglion

Foregut

Head Mesenchyme

Hindgut

Intermediate Mesoderm

Neural Plate/Tube

Pharyngeal Arches and Clefts

Pharynx

Sinus Venosus

Veins

Distal Ganglia of the Facial (VII) and Glossopharyngeal (IX) Nerves

Epithelial Lining of the Pharyngeal Cleft

Floor Plate

Nephrogenic Cord

Primary Head Veins

Probe 3

GEISHA IdGDNF.Burns.2005
 NCBIEnsembl
Gene NameGDNFQ9IAM2_CHICK
Aliasesglial cell line-derived neurotrophic factor long form, GDNF, glial cell derived neurotrophic factor, Official 
Gene Descriptionglial cell derived neurotrophic factorGlial cell line-derived neurotrophic factor short form (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q9IAM2]
Gene Ontologyshow
GO:0001657 ureteric bud development IEA
GO:0001755 neural crest cell migration IEA
GO:0001759 induction of an organ IEA
GO:0001941 postsynaptic membrane organization IEA
GO:0005576 extracellular region IEA
GO:0006916 anti-apoptosis IEA
GO:0007422 peripheral nervous system development IEA
GO:0008083 growth factor activity IEA
GO:0010552 positive regulation of gene-specific transcription from RNA polymerase II promoter IEA
GO:0030432 peristalsis IEA
GO:0031175 neuron projection development IEA
GO:0032770 positive regulation of monooxygenase activity IEA
GO:0042803 protein homodimerization activity IEA
GO:0043524 negative regulation of neuron apoptosis IEA
GO:0048255 mRNA stabilization IEA
GO:0051584 regulation of dopamine uptake IEA
show
GO:0001656 metanephros development IEA
GO:0001657 ureteric bud development IEA
GO:0001759 induction of an organ IEA
GO:0001941 postsynaptic membrane organization IEA
GO:0006916 anti-apoptosis IEA
GO:0007399 nervous system development IEA
GO:0007422 peripheral nervous system development IEA
GO:0008083 growth factor activity IEA
GO:0030432 peristalsis IEA
NCBI Nucleotide HitXM_425018 show details
scoreevaluealignment lengthdescription
3900.0406PREDICTED: Gallus gallus glial cell derived neurotrophic factor (GDNF), mRNA
Ensembl Genome Map
contig view
CitationBurns AJ, Delalande JM (2005). Neural crest cell origin for intrinsic ganglia of the developing chicken lung. Dev Biol. 2005 Jan 1;277(1):63-79.
CopyrightCopyright © 2004 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_425018).
Complete Sequenceshow
ATGTTACAAAGCATTTTTTCTCTTCTTCAAACAGCTAATATGCCAGAGGATTACCCAGATCAGTTCGATGAGGTAGTGG
ACTTTATTCAAGCCACTATTAAGAGACTGAGGAGATCTCCAGATAAACAGACTCCGATTTTTTCTAGGCGGGAGAGGAA
CCGGCAAAGTGCAGCCACAAACGTAGAGAATTCCAGCAAAAAGGGAAGGAGGAACCAAAAGGGCAAAAATCGGGGATGT
GTCTTAACAGAAATACATTTAAATGTGACTGACTTGGATTTGGGATACGAAACCAAAGAAGAGCTCATCTTCCGGTATT
GCAGTGGATCTTGTGATGCAGTTGAGACCACGTATGACAAAATTTTGAAAAACTTAACCAGAAAGAAAAAACTAGTCAA
TGACAAAGTGAGGCAAGCTTGCTGCAGACCCACAGCCTTTGACGATGACCTGTCCTTTTTGGATGATAACCTGGTTTAC
CACATACTGAAAAAACATTCCGCAAAAAGGTGTGGATGTGTCTGA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 26
stage 30

Stomach

No expression.

31-35
stage 35
stage 35

Foregut

 
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