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A chicken embryo gene expression database
 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdLRRN1.Garcia-Calero.2006
 NCBIEnsembl
Gene Name A4ZZA2_CHICK
Gene Description Leucine-rich repeat neuronal 1. [Source:Uniprot/SPTREMBL;Acc:A4ZZA2]
Ensembl Genome Map
contig view
CitationGarcía-Calero E, Garda AL, Marín F, Puelles L. Expression of Lrrn1 marks the prospective site of the zona limitans thalami in the early embryonic chicken diencephalon. Gene Expr Patterns. 2006 Oct;6(8):879-85. Epub 2006 Feb 28.
CopyrightReprinted with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsSequence below was obtained from NCBI using the GenBank Accession No. (BF724065) and primers given in the publication: Lrrn1 forward primer, 5'-TGCTAGGACAAGGCTGAAGG-3'; reverse primer, 5'-CCACAAACACTCGGGTAACA-3'. This sequence is the reverse complement of the 3'end of the gene. The sense strand is shown below.
Complete Sequenceshow
NGGNATTTGGNGGGGNAAACATTTTNCCCCNGGNAAACCNTTTTNGCCCNTNTTTCCCCCCAAGTTTTTAANTCGCCCC
CNTTAAGGGAAAATTTGGTACCCCNCCCAGGTNCCGGTCCCGAAATTCCCGGGNTGGACCCAGGGGGCCGGGGCCTTTN
TCCTTAANACCAGGGATATTGATTTAANCTGAGTTNTTTTNGCCCTAAANATTCCCTGGACTTTTNCCAAAAAAAGGCC
CCCGGNGGGCCAAGGTTGCCAGCAAANTTCCAGCTTCCAACTTGCAAANCTTCATAAATTTGTTTTGAGAAAGTAATTA
TTGAGCAAGTGTCAAATGTTCANAGCAGGCCTNTTCTTCCCCCACCTTCCTGCAGCACTTGTGCAGNTGTNCCACAAAC
ACTCGGGTAACAACAAGCTTTCACTTGAGCCTCCTGTCCAAAGGGGTCGGCATACGGNAAGGGAAGCAGTGTNTGATGT
GTTCCTTGCCACTGGGGAAATTATGTGCCTGTTCTTCCCTGCAGACCTATTTGGCAGTTTTATGTCATTTGTTATCGTT
ATAGTGCAATGCTGTTAAAGAACAGCAAGAGAAAATGGCCTTATGACAGTCATATACTTCTGGATGTGCTGATCTGTAG
TATTTCAGGGGAGCTGATGTTGCTGGGGCTCTGGCAGANANATGCAGGTTCCCTGACAACAGCTCAACAGCCACAACAC
CCTGTTAGTGCCGCACATTNTGCACATACAGCCACCAGTGACATGTATTTTCAGCCTTGTAATCTATGCCCTTAGAGCT
CTGTACAGTTNTCCTGGAAAGTTAAAATTCTGCTAATAAAAGGAAAAAAAAAAACAACAGTGGGTAAGAGATTAATGAC
ATGTGGCATATAATCTTAGCAAATAACCTTCAGCCTTGTCCTAGCAATTCTGTGCTTGCAGTTTGTTGTAAGCAAAAAT
AAAAATATTCTCTTTGCCTAAAAAAAAAAAAAAAAAAAAAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10

Diencephalon

Midbrain

Rhombomeres

Telencephalon

 
13-18
stage 14
stage 15
stage 17
stage 18

Diencephalon

Forebrain

Midbrain

Rhombomeres

Telencephalon

Alar Plate

Basal Plate

Chiasmatic Band

Prosencephalic Alar Plate

Zona Limitans

19-24
stage 20
stage 24

Midbrain

Rhombomeres

Telencephalon

Basal Plate,

Chiasmatic Band

Prosencephalic Alar Plate

Retromammillary Area,

Supramammillary Band

25-26
stage 25
stage 26

Midbrain

Telencephalon

Basal Plate

Mammillary body

Retromammillary Area

Supramammillary Band

Probe 2

GEISHA IdNLRR1.Tonegawa.2003
 NCBIEnsembl
Gene Name A4ZZA2_CHICK
Gene Description Leucine-rich repeat neuronal 1. [Source:Uniprot/SPTREMBL;Acc:A4ZZA2]
Ensembl Genome Map
contig view
CitationTonegawa A, Kasai T, Takahashi Y. Systematic screening for signaling molecules expressed during somitogenesis by the signal sequence trap method. Dev Biol. 2003 Oct 1;262(1):32-50.
Copyright"Reprinted from DEVELOPMENTAL BIOLOGY, 262, Tonegawa A, Kasai T, Takahashi Y. Systematic screening for signaling molecules expressed during somitogenesis by the signal sequence trap method. 32-50, Copyright (2003), with permission from Elsevier". Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsAccession number was given in the paper.
5' Sequenceshow
GCGGCTCGAGGGGATCGATGTTTGCTGTAATTAGCCTTGCCTCCATTTCTGTTTACATTGCAAAAAGATTTAAGAGAAA
AAACTACCACCATTCACTGAAAAAATATATGCAAAAGACCTCCTCAATCCCCCTGAATGAGCTCTATCCTCCACTTATT
AATCTCTGGGAAGGCGACAGTGATAAGGACAAGGATGGTTCTGCAGAGACCAAGCCAACCCAAGTCGACACATCCAGAA
GCTATTACATGTGGTAACTCAGAGGATATTTTGCTTCTGGTAGTAAGGAGCACAAAGACTTTTTTGCTTTATTCTGCAA
AAATGAGAAGTTGAAGACTTTTGTATTTTTGACTTTGCTAGTTTGTGGCAGAGTGGTGAGGACAGGTGGATATTTCAGA
ATTTTTTAGTATAGCGTATCGCAATTGTTTGACACAAATGGCAGCTTCACCTAGCTTCAAGAGTTCTTTTTTTTTTCCC
CTTTCTCTCTTTTTTTTTTTTTTTTAAGGTTATGGGGCTAAACTTAAGGCGGGCCTAACTACAGGGGCTGAATAAAATT
AAGGAAAGGCGGGGGTTACCCGGGTGATCCAAAAGTAGCAAAACCCCATTCTTCTGAAGCCATCAGTAGAGTCCAGTAT
CTGGCAAAGCTAACATACCAGTTTGGAACCCGGCTTTGAACTAGTTCGGAAGGCGGGCCTGAGGACTCGAGCTGAGAAA
AGGGGGAC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 14

Neural Plate/Tube

Paraxial Mesoderm

Somites

comparison of several genes

19-20
stage 20
stage 20
stage 20

Dermatome

Dermomyotome

Myotome

Neural Plate/Tube

Somites

Comparison of several genes

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