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Gene Expression Report
Probe 1| GEISHA Id | pgm2n.pk009.j5 | | | NCBI | Ensembl | | Gene Name | MSC | MSC | | Aliases | MSC, musculin (activated B-cell factor-1), Official | | | Gene Description | musculin (activated B-cell factor-1) | Musculin (Activated B-cell factor 1) (ABF-1) (MyoR). [Source:Uniprot/SWISSPROT;Acc:O60682] | | Gene Ontology | show | | | NCBI Nucleotide Hit | XM_418293 show details| score | evalue | alignment length | description |
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| 630 | 0.0 | 633 | PREDICTED: Gallus gallus similar to MSC protein (LOC420179), mRNA |
| | Ensembl Genome Map | 
contig view | | 5' Sequence | show AAGCTCTCCAAGCTGGACACGCTGCGCCTGGCCTCCAGCTACATCGCGCACCTCCGGCAGCTGCTGCAAGAGGACCGCT
ACGAGAACGGCTACGTGCACCCCGTCAACCTGACTTGGCCATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGA
CGTCTCTGCCGCCAGCAGATTATGTGGAACTACCGCTTAGCCAAATTCTTTCCCTTAGAGCTCTGAGGGAAGTCTATTT
AAAGCAGTAAAGGAAGGAGATGCTGGAAAGGAGAGCTGTTACGGACTGACTGCAGCCGCTGAAGTCTGAGATTTGGAAA
AGCCTTTCCTGGGCTTTGCCATTCGTGCCGCTGCCTGAGGACCTGTTGTTCTGAGGCTATTAAACTAATGGAAGAGGAA
CAGAATGATGTAGAATTAACAGCATGGACCAAAATGCAACTCTACAAACTAACCCCAACCAGTGTTATTTGTATTCTAA
AGCAAAGCAGTATTTTAGAGTAGCTTCGAAACTCAGATTTATAATATATTTTGATGGCTTTTGTATTCACGGGTCGGGT
TTACTGTAACTATGCAATAAGTGTAACCATACTTTGTTTTTGTCCTTTTAACCGGAGTTTTCCTGGAAATATGTAAGCA
GCTACATTCTGCATGTAGGCTACCACCCAATGGAATGAAACTAATTCCTTTGGTTATGCCTTGACGTGCCACGTGTAAG
GACGTGNGGCTGTCCCCAAGATGTGGCACAGTTTCTACATCTTAATATGGAAGAGAAATTCTGCTCACTGAAAGGCCAG
GGTGCACGTGCTGCAAAGAATGAATTGTGTGATGCTGCAATACAGC |
Probe 2| GEISHA Id | MyoR.Bothe.2006 | | | NCBI | Ensembl | | Gene Name | MSC | MSC | | Aliases | MSC, musculin (activated B-cell factor-1), Official | | | Gene Description | musculin (activated B-cell factor-1) | Musculin (Activated B-cell factor 1) (ABF-1) (MyoR). [Source:Uniprot/SWISSPROT;Acc:O60682] | | Gene Ontology | show | | | NCBI Nucleotide Hit | XM_418293 show details| score | evalue | alignment length | description |
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| 577 | 0.0 | 577 | PREDICTED: Gallus gallus similar to MSC protein (LOC420179), mRNA |
| | Ensembl Genome Map | 
contig view | | Citation | Bothe I, Dietrich S. The molecular setup of the avian head mesoderm and its implication for craniofacial myogenesis. Dev Dyn. 2006 Oct;235(10):2845-60. | | Copyright | Copyright © 2006 Wiley-Liss, Inc. | | Comments | Probe sequence is nt 649-1226 of GenBank entry XM_418293 | | Complete Sequence | show TCTTCTTATATCCCCCTGTTGAACGTTTACGCGAGCGTTCACCCGTCCTTTCCCTCGCGGGGCTCTCCCGCAGAGCCCG
ATACCCCGCAGCCCACGGGGCGGCCCCGCGCCCCTCCGCGCCCCTCCGCGCGGCGCGGCGCCGCGCCGGGCATTGCGGG
AGGCACCGCCCCACCGCGGGGCTCGGCCGGGGGCTGCCCCCTCCTCCTCCCCCCGGCCCGGCCGCCTCTCGGCCCCGCG
GCCGCCGCTATATAGCGCTGTGCGGGGGCGCATCCCCCCGCCGCTCCCCCCGCGCCTCCGCACGGACTCTCCGCGGCGG
GGCCGCCCCGCGCTGCCCGCAGCCGCCTCGGCCGCCCGCCCTGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAG
CCGCCGCCGCCGCCTCCCCCCGGGGCCATGTCAACGGGCTCCGGGAGCGAGGCGGAGGAGCTGCCCGAGATGGACCTGC
GGGCGCTGCAGCTGGACTACCCGGCGGCGGGCAAGCGGCAGCCCCGTGGCGAGCTCTACCCCTCGGGGGACAACTCCTC
GGCGGCGGAGGAGGAGGAGGAGGA |
Probe 3| GEISHA Id | MyoR.Dastjerdi.2007 | | | NCBI | Ensembl | | Gene Name | MSC | MSC | | Aliases | MSC, musculin (activated B-cell factor-1), Official | | | Gene Description | musculin (activated B-cell factor-1) | Musculin (Activated B-cell factor 1) (ABF-1) (MyoR). [Source:Uniprot/SWISSPROT;Acc:O60682] | | Gene Ontology | show | | | NCBI Nucleotide Hit | XM_418293 show details| score | evalue | alignment length | description |
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| 558 | 0.0 | 558 | PREDICTED: Gallus gallus similar to MSC protein (LOC420179), mRNA |
| | Ensembl Genome Map | 
contig view | | Citation | Dastjerdi A, Robson L, Walker R, Hadley J, Zhang Z, Rodriguez-Niedenführ M, Ataliotis P, Baldini A, Scambler P, Francis-West P. Tbx1 regulation of myogenic differentiation in the limb and cranial mesoderm. Dev Dyn. 2007 Feb;236(2):353-63. | | Copyright | Copyright © 2007 Wiley-Liss, Inc. | | Comments | Authors indicated ""A 1,200-bp cMyoR cDNA fragment was generated using 5AGA GGG GAA GCA GTC GCA G 3 and 5ACA GCA TTC GGA TTA GTG AAG 3 primers." The probe listed begins with the first primer, but only 879 bases 3' of that are currently associated with this transcript in ensembl. These are listed here as probe sequence. | | Complete Sequence | show AGAGGGGAAGCAGTCGCAGCGCAACGCGGCCAACGCGCGGGAGCGGGCGCGGATGCGGGTGCTGAGCAAAGCGTTCTCC
CGGCTGAAGACCAGCCTGCCCTGGGTGCCCCCCGACACCAAGCTCTCCAAGCTGGACACGCTGCGCCTGGCCTCCAGCT
ACATCGCGCACCTCCGGCAGCTGCTGCAAGAGGACCGCTACGAGAACGGCTACGTGCACCCCGTCAACCTGACTTGGCC
ATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGACGTCTCTGCCGCCAGCAGATTATGTGGAACTACCGCTTAG
CCAAATTCTTTCCCTTAGAGCTCTGAGGGAAGTCTATTTAAAGCAGTAAAGGAAGGAGATGCTGGAAAGGAGAGCTGTT
ACGGACTGACTGCAGCCGCTGAAGTCTGAGATTTGGAAAAGCCTTTCCTGGGCTTTGCCATTCGTGCCGCTGCCTGAGG
ACCTGTTGTTCTGAGGCTATTAAACTAATGGAAGAGGAACAGAATGATGTAGAATTAACAGCATGGACCAAAATGCAAC
TCTACAAACTAACCCCAACCAGTGTTATTTGTATTCTAAAGCAAAGCAGTATTTTAGAGTAGCTTCGAAACTCAGATTT
ATAATATATTTTGATGGCTTTTGTATTCACGGGTCGGGTTTACTGTAACTATGCAATAAGTGTAACCATACTTTGTTTT
TGTCCTTTTAACCGGAGTTTTCCTGGAAATATGTAAGCAGCTACATTCTGCATGTAGGCTACCACCCAATGGAATGAAA
CTAATTCCTTTGGTTATGCCTTGACGTGCCACGTGTAAGGACGTGGGGCTGTCCCCAAGATGTGGCACAGTTTCTACAT
CTTAATATGG |
Probe 4| GEISHA Id | MyoR.Bothe.2007 | | | NCBI | Ensembl | | Gene Name | MSC | MSC | | Aliases | MSC, musculin (activated B-cell factor-1), Official | | | Gene Description | musculin (activated B-cell factor-1) | Musculin (Activated B-cell factor 1) (ABF-1) (MyoR). [Source:Uniprot/SWISSPROT;Acc:O60682] | | Gene Ontology | show | | | NCBI Nucleotide Hit | XM_418293 show details| score | evalue | alignment length | description |
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| 2639 | 0.0 | 2639 | PREDICTED: Gallus gallus similar to MSC protein (LOC420179), mRNA |
| | Ensembl Genome Map | 
contig view | | Citation | Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409. | | Copyright | Copyright © 2007 Wiley-Liss, Inc. | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_418293). | | Complete Sequence | show ATGCTCATTGCAGGAGAATCGGACCAGGAGACCTTTAATAGTCCATCCCAACTCAAACGATTCTACGATTCCATGACTT
TCCTTTCCGTCCAGCAGCTCCGAGCTGTCACTTCGTGCTGTCTTCACCACCGTCCCAGCGGCCGTGTGCCCCAACGAGA
GCGAGCAGTGACCCCCCCGGCGGGTCCCGGGGGAGCCGCCCCCACCCCCTCCGCCTCCGCCCGGCCGAAGCTAACTGGG
GAGGCCAAGCAGCCCCCAAGTCTGGCGCACACCCCTTCCTCAGTGCCAGCGAGAGCATCTCAGTGTCAACCCGAGTTCA
AGAGATCCAGTTGCAGGATCAGCCGCGTGTTTCGGCGCTTCAAGCAATGTCAAGTTTCCCTTGGAAGGGCTGCTCCCAA
ACCCGGCTCTGATGTGGTTCTGGCCCCAGCGGGCGAAGCCGAGGTTTACACAGCGTTAAGTGGCCGCGGGCCGCTGAGC
GCTGGGCGAAAGCACGGCCGCGGGTGCCAGGAAAGTCGCTCTGCGGCAGCGGGAAGGTTCCACTTAACTCGGGAGGGAA
ATACAGGGCCGGGAGGGCAGCGGGGAAGCAATGTGTTGCTTATTCATCCTGGGAAGAGGCGGCGTCTGGGGCGCGGTAG
GGATGCACCTCGGGGGCTCTTCTTATATCCCCCTGTTGAACGTTTACGCGAGCGTTCACCCGTCCTTTCCCTCGCGGGG
CTCTCCCGCAGAGCCCGATACCCCGCAGCCCACGGGGCGGCCCCGCGCCCCTCCGCGCCCCTCCGCGCGGCGCGGCGCC
GCGCCGGGCATTGCGGGAGGCACCGCCCCACCGCGGGGCTCGGCCGGGGGCTGCCCCCTCCTCCTCCCCCCGGCCCGGC
CGCCTCTCGGCCCCGCGGCCGCCGCTATATAGCGCTGTGCGGGGGCGCATCCCCCCGCCGCTCCCCCCGCGCCTCCGCA
CGGACTCTCCGCGGCGGGGCCGCCCCGCGCTGCCCGCAGCCGCCTCGGCCGCCCGCCCTGCCGCCGCCGCCGCCGCCGC
AGCAGCAGCAGCAGCAGCCGCCGCCGCCGCCTCCCCCCGGGGCCATGTCAACGGGCTCCGGGAGCGAGGCGGAGGAGCT
GCCCGAGATGGACCTGCGGGCGCTGCAGCTGGACTACCCGGCGGCGGGCAAGCGGCAGCCCCGTGGCGAGCTCTACCCC
TCGGGGGACAACTCCTCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGACGGCGAGGGCA
GCTGTGCGGCGGGGCCGGCGGGCTGCAAGAGGAAGCGGGCGAGGGGCAGCGGCCCCGGGGGCAAGAAGGCGCCGTCGGG
GCCGCGGGGGCCGGCGGCAGAGGGGAAGCAGTCGCAGCGCAACGCGGCCAACGCGCGGGAGCGGGCGCGGATGCGGGTG
CTGAGCAAAGCGTTCTCCCGGCTGAAGACCAGCCTGCCCTGGGTGCCCCCCGACACCAAGCTCTCCAAGCTGGACACGC
TGCGCCTGGCCTCCAGCTACATCGCGCACCTCCGGCAGCTGCTGCAAGAGGACCGCTACGAGAACGGCTACGTGCACCC
CGTCAACCTGACTTGGCCATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGACGTCTCTGCCGCCAGCAGATTA
TGTGGAACTACCGCTTAGCCAAAGTAATTTTTTTCCTTGTTGATCATTTTTTTTACGGGCTGGATGTTTTTAAGAGCTG
TGATTTGTCGGCTCGAGACCAGAAGATGGGGACCAAACCCCGTCTCTGTGTGTTAAATCTGTGTTTCCCCTCAGTTCTT
TCCCTTAGAGCTCTGAGGGAAGTCTATTTAAAGCAGTAAAGGAAGGAGATGCTGGAAAGGAGAGCTGTTACGGACTGAC
TGCAGCCGCTGAAGTCTGAGATTTGGAAAAGCCTTTCCTGGGCTTTGCCATTCGTGCCGCTGCCTGAGGACCTGTTGTT
CTGAGGCTATTAAACTAATGGAAGAGGAACAGAATGATGTAGAATTAACAGCATGGACCAAAATGCAACTCTACAAACT
AACCCCAACCAGTGTTATTTGTATTCTAAAGCAAAGCAGTATTTTAGAGTAGCTTCGAAACTCAGATTTATAATATATT
TTGATGGCTTTTGTATTCACGGGTCGGGTTTACTGTAACTATGCAATAAGTGTAACCATACTTTGTTTTTGTCCTTTTA
ACCGGAGTTTTCCTGGAAATATGTAAGCAGCTACATTCTGCATGTAGGCTACCACCCAATGGAATGAAACTAATTCCTT
TGGTTATGCCTTGACGTGCCACGTGTAAGGACGTGGGGCTGTCCCCAAGATGTGGCACAGTTTCTACATCTTAATATGG
AAGAGAAATTCTGCTCACTGAAAGGCCAGGGTGCACGTGCTGCAAAGAATGAATTGTGTGATGCTGCAATACAGCAAGG
ATTCAAAACGTGTTAAACATTATCTTCTGTACTGCCACGCTTCTCTTTGATAAGTTTACACTCAAATGAGTTCTAGTGA
TGTTTCTTCACTAATCCGAATGCTGTAATAAAAGGAGGATGCCATCAAATAAGTTGCAAATGTAAATAACTTTATTTTT
TTATAAATGACATTAAAAGCTTGGTTACAATG |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 7-10 |  | | stage 10 |
 | | stage 10 |
| Head Mesenchyme | |
Probe 5| GEISHA Id | MyoR.vonScheven.2006 | | | NCBI | Ensembl | | Gene Name | MSC | MSC | | Aliases | MSC, musculin (activated B-cell factor-1), Official | | | Gene Description | musculin (activated B-cell factor-1) | Musculin (Activated B-cell factor 1) (ABF-1) (MyoR). [Source:Uniprot/SWISSPROT;Acc:O60682] | | Gene Ontology | show | | | NCBI Nucleotide Hit | XM_418293 show details| score | evalue | alignment length | description |
|---|
| 577 | 0.0 | 577 | PREDICTED: Gallus gallus similar to MSC protein (LOC420179), mRNA |
| | Ensembl Genome Map | 
contig view | | Citation | von Scheven G, Bothe I, Ahmed MU, Alvares LE, Dietrich S (2006). Protein and genomic organisation of vertebrate MyoR and Capsulin genes and their expression during avian development.
Gene Expr Patterns. Apr;6(4):383-93. Epub 2006 Jan 18. | | Copyright | Copyright © 2005 Elsevier B.V. All rights reserved. | | Comments | Gene specific primers were designed on the basis of the sequences available on the NCBI, the Ensembl and chick EST databases (http://www.ncbi.nlm.nih.gov/, http://www.ensembl.org/index.html, http://www.chick.umist.ac.uk), with MyoR forward: CGCGAATTCACTTGGCCATTTGTGGTCTC; MyoR reverse: CGCTCTAGAGTAAACCCGACCCGTGAATA, Located primers in NCBI Accession # XM_418293. | | Complete Sequence | show ACTTGGCCATTTGTGGTCTCGGGACGACCCGACGCTGACACCAAAGACGTCTCTGCCGCCAGCAGATTATGTGGAACTA
CCGCTTAGCCAAAGTAATTTTTTTCCTTGTTGATCATTTTTTTTACGGGCTGGATGTTTTTAAGAGCTGTGATTTGTCG
GCTCGAGACCAGAAGATGGGGACCAAACCCCGTCTCTGTGTGTTAAATCTGTGTTTCCCCTCAGTTCTTTCCCTTAGAG
CTCTGAGGGAAGTCTATTTAAAGCAGTAAAGGAAGGAGATGCTGGAAAGGAGAGCTGTTACGGACTGACTGCAGCCGCT
GAAGTCTGAGATTTGGAAAAGCCTTTCCTGGGCTTTGCCATTCGTGCCGCTGCCTGAGGACCTGTTGTTCTGAGGCTAT
TAAACTAATGGAAGAGGAACAGAATGATGTAGAATTAACAGCATGGACCAAAATGCAACTCTACAAACTAACCCCAACC
AGTGTTATTTGTATTCTAAAGCAAAGCAGTATTTTAGAGTAGCTTCGAAACTCAGATTTATAATATATTTTGATGGCTT
TTGTATTCACGGGTCGGGTTTACT |
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