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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdMmp2.Duong.2004
 NCBIEnsembl
Gene NameMMP2MMP2_CHICK
Aliasesmatrix metalloproteinase 2|matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) 
Gene Descriptionmatrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)72 kDa type IV collagenase precursor (EC 3.4.24.24) (72 kDa gelatinase) (Matrix metalloproteinase-2) (MMP-2) (Gelatinase A). [Source:Uniprot/SWISSPROT;Acc:Q90611]
Gene Ontologyshow
GO:0001955 blood vessel maturation IEA
GO:0005509 calcium ion binding IEA
GO:0005515 protein binding IEA
GO:0005576 extracellular region IEA
GO:0005578 proteinaceous extracellular matrix IEA
GO:0005886 plasma membrane IEA
GO:0006508 proteolysis IEA
GO:0008152 metabolic process IEA
GO:0008270 zinc ion binding IEA
GO:0030017 sarcomere IEA
GO:0030574 collagen catabolic process IEA
show
GO:0000270 peptidoglycan metabolic process IEA
GO:0001955 blood vessel maturation IEA
GO:0004222 metalloendopeptidase activity IEA
GO:0004228 gelatinase A activity IEA
GO:0005509 calcium ion binding IEA
GO:0005515 protein binding IEA
GO:0005578 proteinaceous extracellular matrix IEA
GO:0005886 plasma membrane IEA
GO:0006508 proteolysis IEA
GO:0008233 peptidase activity IEA
GO:0008237 metallopeptidase activity IEA
GO:0008270 zinc ion binding IEA
GO:0016787 hydrolase activity IEA
GO:0030017 sarcomere IEA
GO:0030574 collagen catabolic process IEA
GO:0046872 metal ion binding IEA
NCBI Nucleotide HitNM_204420 show details
scoreevaluealignment lengthdescription
4750.0475Gallus gallus matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) (MMP2), mRNA
Ensembl Genome Map
contig view
CitationDuong TD, Erickson CA.(2004) MMP-2 plays an essential role in producing epithelial-mesenchymal transformations in the avian embryo. Dev Dyn. Jan;229(1):42-53.
CopyrightWiley-Liss, Inc. 2004
Complete Sequenceshow
ACTCCTGTACAAGTGCAGGTCGCAATGATGGCAAGCTGTGGTGTGCTTCTACCAGCAGCTATGATGATGACCGCAAGTG
GGGCTTTTGTCCAGATCAAGGATACAGTCTCTTCTTGGTTGCTGCCCACGAATTTGGCCATGCGATGGGATTAGAGCAC
TCCGAGGACCCAGGAGCTCTCATGGCCCCGATCTACACCTACACCAAGAACTTCCGCCTTTCTCAGGATGACATTAAGG
GGATTCAGGAGCTATATGAAGTATCACCTGATGTGGAACCTGGACCAGGGCCAGGACCAGGGCCAGGACCACGTCCTAC
CCTTGGACCTGTCACTCCAGAGCTCTGCAAGCACGACATTGTATTTGATGGAGTTGCACAAATTAGAGGAGAAATATTT
TTCTTCAAAGACAGATTCATGTGGAGGACTGTAAACCCTCGAGGAAAACCCACAGGTCCTCTTCTCGTTGCTACATTCT
G
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
stage 12
stage 12

Lateral Plate Mesoderm

Midbrain

Sclerotome

Somites

head mesenchyme

13-18
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 16
stage 16
stage 16

Eye

Face Mesenchyme

Myotome

Neural Crest

Neural Plate/Tube

Sclerotome

Somatopleure

Somites

head mesenchyme

somitocoel

19-24
stage 19
stage 19
stage 19
stage 19
stage 19
stage 21
stage 22
stage 24
stage 24

Dermatome

Face Mesenchyme

Limb Buds

Pharyngeal Arches and Clefts

Sclerotome

Somatopleure

Somites

Wing Mesenchyme

dermis

head mesenchyme

mesenchymal dermis

25-30
stage 28
stage 28
stage 30
stage 30
stage 30

Dermatome

Wing Mesenchyme

dermis

dermis

developing feather germs

31-35
stage 35
 

dermis

developing feather germs

Probe 2

GEISHA IdMmp2.Linask.2005
 NCBIEnsembl
Gene NameMMP2MMP2_CHICK
Aliasesmatrix metalloproteinase 2|matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) 
Gene Descriptionmatrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)72 kDa type IV collagenase precursor (EC 3.4.24.24) (72 kDa gelatinase) (Matrix metalloproteinase-2) (MMP-2) (Gelatinase A). [Source:Uniprot/SWISSPROT;Acc:Q90611]
Gene Ontologyshow
GO:0001955 blood vessel maturation IEA
GO:0005509 calcium ion binding IEA
GO:0005515 protein binding IEA
GO:0005576 extracellular region IEA
GO:0005578 proteinaceous extracellular matrix IEA
GO:0005886 plasma membrane IEA
GO:0006508 proteolysis IEA
GO:0008152 metabolic process IEA
GO:0008270 zinc ion binding IEA
GO:0030017 sarcomere IEA
GO:0030574 collagen catabolic process IEA
show
GO:0000270 peptidoglycan metabolic process IEA
GO:0001955 blood vessel maturation IEA
GO:0004222 metalloendopeptidase activity IEA
GO:0004228 gelatinase A activity IEA
GO:0005509 calcium ion binding IEA
GO:0005515 protein binding IEA
GO:0005578 proteinaceous extracellular matrix IEA
GO:0005886 plasma membrane IEA
GO:0006508 proteolysis IEA
GO:0008233 peptidase activity IEA
GO:0008237 metallopeptidase activity IEA
GO:0008270 zinc ion binding IEA
GO:0016787 hydrolase activity IEA
GO:0030017 sarcomere IEA
GO:0030574 collagen catabolic process IEA
GO:0046872 metal ion binding IEA
NCBI Nucleotide HitNM_204420 show details
scoreevaluealignment lengthdescription
30730.03073Gallus gallus matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) (MMP2), mRNA
Ensembl Genome Map
contig view
CitationLinask K, Han M, Cai D, Brauer P, Manisastry, S. Cardiac Morphogenesis: Matrix Metalloproteinase Coordination of Cellular Mechanisms Underlying Heart Tube Formation and Directionality of Looping. Dev Dyn. 2005 Jul;233(3):739-53.
CopyrightCopyright © 2005 Wiley-Liss, Inc.
CommentsInsufficient information provided to verify exact probe sequence. Sequence provided is entire cDNA sequence from Accession # U07775.
Complete Sequenceshow
AATTCCGGCAAAAGAGAAAACGGTGCAGAGAGTTAAGATGTGCAGATAAGCAACTAGTGCACTGTGCAGCCAAAGTAAC
TGACAGTCAGTCAGAGAAATCTTTTAAAGAGGATTGCAAAAATATAGGCAGAATGAAGACTCACAGTGTTTTTGGCTTC
TTTTTTAAAGTACTATTAATCCAAGTGTATCTTTTTAACAAAACTTTAGCTGCACCGTCACCAATCATTAAGTTCCCTG
GAGACAGCACTCCAAAAACAGACAAAGAGCTAGCAGTGCAATACCTGAATAAATATTATGGATGCCCAAAAGACAATTG
CAACTTATTTGTATTGAAAGATACTTTGAAGAAAATGCAGAAATTTTTTGGGCTGCCTGAAACAGGAGATTTGGATCAA
AACACAATTGAGACAATGAAGAAACCCCGCTGTGGTAACCCCGATGTGGCCAATTACAACTTCTTTCCAAGAAAGCCAA
AATGGGAAAAGAATCATATAACATACAGGATTATAGGCTATACCCCGGATTTGGATCCTGAGACAGTAGATGATGCCTT
TGCCCGAGCCTTTAAAGTCTGGAGTGATGTCACGCCACTGAGATTTAACCGAATAAATGATGGAGAGGCAGACATTATG
ATTAATTTTGGCCGATGGGAACATGGTGATGGCTATCCATTTGATGGCAAAGATGGTCTCCTGGCTCACGCCTTTGCAC
CGGGGCCAGGAATTGGAGGAGACTCCCATTTTGATGATGATGAACTGTGGACTCTTGGAGAAGGGCAAGTGGTTAGAGT
AAAGTATGGAAATGCAGATGGTGAATACTGCAAATTTCCCTTCTGGTTCAATGGTAAGGAATACAACAGCTGCACAGAT
GCAGGACGTAATGATGGATTCCTCTGGTGTTCCACAACCAAAGACTTTGATGCAGATGGCAAATATGGCTTTTGTCCCC
ATGAGTCACTTTTTACAATGGGTGGCAATGGTGATGGACAGCCCTGCAAGTTTCCCTTTAAATTTCAAGGCCAGTCCTA
TGACCAGTGTACAACAGAAGGCAGGACAGATGGATACAGATGGTGTGGAACCACTGAAGACTATGATAGAGATAAGAAA
TACGGATTCTGCCCAGAAACTGCCATGTCAACAGTTGGTGGAAATTCAGAAGGAGCTCCTTGTGTATTCCCCTTCATCT
TCCTTGGGAATAAATACGACTCCTGTACAAGTGCAGGTCGCAATGATGGCAAGCTGTGGTGTGCTTCTACCAGCAGCTA
TGATGATGACCGCAAGTGGGGCTTTTGTCCAGATCAAGGATACAGTCTCTTCTTGGTTGCTGCCCACGAATTTGGCCAT
GCGATGGGATTAGAGCACTCCGAGGACCCAGGAGCTCTCATGGCCCCGATCTACACCTACACCAAGAACTTCCGCCTTT
CTCAGGATGACATTAAGGGGATTCAGGAGCTATATGAAGTATCACCTGATGTGGAACCTGGACCAGGGCCAGGACCAGG
GCCAGGACCACGTCCTACCCTTGGACCTGTCACTCCAGAGCTCTGCAAGCACGACATTGTATTTGATGGAGTTGCACAA
ATTAGAGGAGAAATATTTTTCTTCAAAGACAGATTCATGTGGAGGACTGTAAACCCTCGAGGAAAACCCACAGGTCCTC
TTCTCGTTGCTACATTCTGGCCTGATCTGCCAGAGAAAATCGATGCTGTCTACGAGTCCCCTCAGGATGAGAAGGCTGT
ATTTTTTGCAGGAAATGAGTACTGGGTTTATACAGCCAGCAACCTGGATAGGGGCTATCCAAAGAAACTCACCAGCCTG
GGACTACCCCCTGATGTGCAACGCATTGATGCAGCCTTCAACTGGGGCAGAAACAAGAAGACATATATTTTCTCTGGAG
ACAGATACTGGAAGTACAATGAAGAAAAGAAAAAAATGGAGCTTGCAACCCCAAAATTCATTGCGGATTCTTGGAATGG
AGTTCCAGATAACCTCGATGCTGTCCTGGGTCTTACTGACAGCGGGTACACCTATTTTTTCAAAGACCAGTACTATCTA
CAAATGGAAGACAAGAGTTTGAAGATTGTTAAAATTGGCAAGATAAGTTCTGACTGGTTGGGTTGCTGAACTGTAGAAT
ATATTAATAACCAAATATTTACTTTTTTGTTATATACCTTATCTGTAATTAGAAATAGATCTGAATGTCAATTACTGGA
CCAGTCAGGTACTGGCACCCAAACATTAAGTACCAGTACTGTACACATCTGATAATTTAAAAGTGTTTGCCTCCTCAAC
ATACAAAAGATGTTTACGTATCTATTCTGGTACAATTTTTCAGTTTTTGTGCTAGTCATAGCAATGCTAGTAGCAGAAC
ACGCACGGTTCTTTATTCCCCTGGTGCTTGAAGAAAGCATTGAAATCATTGGAGACTGGACCAGACCCCTGTGTTAAAT
CCATCTCAAATAGCCTCAAGTAAGATGTACCAGCAGTGCACTTTGATTTTTTTTTAATTTTTTTTTTTAAATACAACTC
TTTTATAAATAGATGGTTTGTGTTAATGTTTTAACCCTCTTGCGAGTTTGATCATTACTGCCATTTATTACATAATGAT
ACAAAAGACTGTCAAAGGCACAGGTTGCCACGGGATTTGATTTGTATTGATGCATGATGGAATCATGGCAAGAAACTGT
ATTAAAGTATTGTTTTAAAGTACTTTCTATTTTAAAACCTTAGTTCAACTTAGCAATTTGCTTCCTGCACTTTGTTACT
ACTCTATAACTTGTCTATACAGACAGAATGACTCAGATGTTTTAAATCAATGTATTATACACAGAAGTCAAGTATTACT
GTTTACCTTGTTTTATTTTTCTGTTCTTTATAATATTGAGTTTTTGTTTGGTTAGGCTTTCTGCTTAGGCATTGGGCAA
CAGAAGGTGTTCCTTTCACATATGATGGAATGTTTCTCATTAAAAAAAAAAAAGGTTAAAAAAATCCAGAAAACAATGT
CCCAAACATGAAATGCCAATGCTACAAATAAAATTAAATTACACTGTCAAAAAAAAAAAAAAACGGTTAAC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 1

Unlabeled Embryonic

sense probe

7-12
stage 12
stage 12
stage 12
stage 12
stage 12

Endocardium

Splanchnic Mesoderm

dorsal mesocardium
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