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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report

Probe 1

GEISHA IdR49
 NCBIEnsembl
Gene NameAPOA1APOA1_CHICK
Aliasesapolipoprotein AI (put.); putative 
Gene Descriptionapolipoprotein A-IApolipoprotein A-I precursor (Apo-AI) (ApoA-I). [Source:Uniprot/SWISSPROT;Acc:P08250]
Gene Ontologyshow
GO:0005319 lipid transporter activity IEA
GO:0005576 extracellular region IEA
GO:0006629 lipid metabolic process IEA
GO:0006869 lipid transport IEA
GO:0008202 steroid metabolic process IEA
GO:0008203 cholesterol metabolic process IEA
GO:0008289 lipid binding IEA
GO:0042157 lipoprotein metabolic process IEA
show
GO:0005319 lipid transporter activity IEA
GO:0005576 extracellular region IEA
GO:0006629 lipid metabolic process IEA
GO:0006810 transport IEA
GO:0006869 lipid transport IEA
GO:0008202 steroid metabolic process IEA
GO:0008203 cholesterol metabolic process IEA
GO:0008289 lipid binding IEA
GO:0042157 lipoprotein metabolic process IEA
NCBI Nucleotide HitNM_205525 show details
scoreevaluealignment lengthdescription
4490.0461Gallus gallus apolipoprotein A-I (APOA1), mRNA
Ensembl Genome Map
contig view
5' Sequenceshow
GGAGCAGTGCGGAGCAGCGGCAGGAGAGCGCCGGTTCAGCGCGAAGATGAGAGGCGTGCTGGTGACCCTCGCTGTGCTC
TTCCTGACGGGCACCCAGGCCCGCTCCTTCTGGCAGCACGATGAGCCCCAGACGCCCCTGGACCGCATTCGGGATATGG
TGGACGTCTACCTGGAGACGGTGAAGGCCAGCGGCAAGGATGCCATCGCCCAGTTCGAGTCCTCTGCTGTGGGCAAACA
GCTTGACCTGAAGCTGGCTGACAACCTGGACACGCTGAGTGCCGCGGCTGCCAAGCTGCGTGAGGACATGGCTCCCTAC
TACAAGGAGGTGCGCGAGATGTGGCTGAAGGACACCGAGGCTCTGCGTGCTGAGCTCACCAAGGACCTGGAGGAGGTGA
AGGAGAAGATCCGGCCCTTCCTGGACCAGTTCTCCGCCAAGTGGACGGAGGAGCTGGAGCAGTACCGNC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4

Area Opaca

Extraembryonic

 
7-12
stage 7

Area Opaca

Extraembryonic

 
13
stage 13

Extraembryonic

 

Probe 2

GEISHA IdG39
 NCBIEnsembl
Gene NameAPOA1APOA1_CHICK
Aliasesapolipoprotein AI (put.); putative 
Gene Descriptionapolipoprotein A-IApolipoprotein A-I precursor (Apo-AI) (ApoA-I). [Source:Uniprot/SWISSPROT;Acc:P08250]
Gene Ontologyshow
GO:0005319 lipid transporter activity IEA
GO:0005576 extracellular region IEA
GO:0006629 lipid metabolic process IEA
GO:0006869 lipid transport IEA
GO:0008202 steroid metabolic process IEA
GO:0008203 cholesterol metabolic process IEA
GO:0008289 lipid binding IEA
GO:0042157 lipoprotein metabolic process IEA
show
GO:0005319 lipid transporter activity IEA
GO:0005576 extracellular region IEA
GO:0006629 lipid metabolic process IEA
GO:0006810 transport IEA
GO:0006869 lipid transport IEA
GO:0008202 steroid metabolic process IEA
GO:0008203 cholesterol metabolic process IEA
GO:0008289 lipid binding IEA
GO:0042157 lipoprotein metabolic process IEA
NCBI Nucleotide HitNM_205525 show details
scoreevaluealignment lengthdescription
9420.0958Gallus gallus apolipoprotein A-I (APOA1), mRNA
Ensembl Genome Map
contig view
Complete Sequenceshow
GGCGGCAGGAGAGCGCCGGTTCAGCGCGAAGATGAGAGGCGTGCTGGTGACCCTCGCTGTGCTCTTCCTGACGGGCACC
CAGGCCCGCTCCTTCTGGCAGCACGATGAGCCCCAGACGCCCCTGGACCGCATTCGGGATATGGTGGACGTCTACCTGG
AGACGGTGAAGGCCAGCGGCAAGGATGCCATCGCCCAGTTCGAGTCCTCTGCTGTGGGCAAACAGCTTGACCTGAAGCT
GGCTGACAACCTGGACACGCTGAGTGCCGCGGCTGCCAAGCTGCGTGAGGACATGGCTCCCTACTACAAGGAGGTGCGC
GAGATGTGGCTGAAGGACACCGAGGCTCTGCGTGCTGAGCTCACCAAGGACCTGGAGGAGGTGAAGGAGAAGATCCGGC
CCTTCCTGGACCAGTTCTCCGCCAAGTGGACGGAGGAGCTGGAGCAGTACCGCCAGCGCCTGACGCCCGTGGCTCAGGA
GCTGAAGGAGCTCACCAAGCAGAAGGTGGAGCTGATGCAGGCCAAGCTGACCCCGGTGGCTGAGGAGGCGCGGGATCGT
CTGCGTGGGCACGTGGAGGAGCTGCGCAAGAACCTGGCGCCATACAGCGATGAGCTGCGGCAGAAGCTGAGCCAGAAGC
TGGAGGAGATCCGTGAGAAGGGCATCCCCCAGGCTTCCGAGTACCAGGCCAAGGTGATGGAGCAGCTCAGCAACCTGCG
TGAGAAGATGACGCCTCTGGTGCAGGAATTCAGGGAGCGCCTCACCCCCTATGCTGAGAACCTCAAGAACCGCTTGATC
TCCTTCCTGGACGAACTCCAGAAGTCCGTGGCCTGAGCTGCCGGCCCAGGGACTGACCCCAGGCCATGCTGGCCTCCGG
GAGTCCTCGGGGACCCCTCCTTAATCTCCTCTCCCCCCCCGACCCGGAGTCCGTCTCAACTTTGCCATTCTTTTGTCAA
ATAAACATGACCTGAAGT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6

Area Opaca

Extraembryonic

ventral

13-18
stage 8
stage 10
stage 11
stage 11

Area Opaca

Endoderm, early

Extraembryonic

 
19-22
stage 20
stage 20
stage 22

Amnion

Yolk Sack or Stalk

 

Probe 3

GEISHA IdO39
 NCBIEnsembl
Gene NameAPOA1APOA1_CHICK
Aliasesapolipoprotein AI (put.); putative 
Gene Descriptionapolipoprotein A-IApolipoprotein A-I precursor (Apo-AI) (ApoA-I). [Source:Uniprot/SWISSPROT;Acc:P08250]
Gene Ontologyshow
GO:0005319 lipid transporter activity IEA
GO:0005576 extracellular region IEA
GO:0006629 lipid metabolic process IEA
GO:0006869 lipid transport IEA
GO:0008202 steroid metabolic process IEA
GO:0008203 cholesterol metabolic process IEA
GO:0008289 lipid binding IEA
GO:0042157 lipoprotein metabolic process IEA
show
GO:0005319 lipid transporter activity IEA
GO:0005576 extracellular region IEA
GO:0006629 lipid metabolic process IEA
GO:0006810 transport IEA
GO:0006869 lipid transport IEA
GO:0008202 steroid metabolic process IEA
GO:0008203 cholesterol metabolic process IEA
GO:0008289 lipid binding IEA
GO:0042157 lipoprotein metabolic process IEA
NCBI Nucleotide HitNM_205525 show details
scoreevaluealignment lengthdescription
5600.0572Gallus gallus apolipoprotein A-I (APOA1), mRNA
Ensembl Genome Map
contig view
Commentsolder stages not yet available
5' Sequenceshow
GGAGCAGTGCGGAGCAGCGGCAGGAGAGCGCCGGTTCAGCGCGAAGATGAGAGGCGTGCTGGTGACCCTCGCTGTGCTC
TTCCTGACGGGCACCCAGGCCCGCTCCTTCTGGCAGCACGATGAGCCCCAGACGCCCCTGGACCGCATTCGGGATATGG
TGGACGTCTACCTGGAGACGGTGAAGGCCAGCGGCAAGGATGCCATCGCCCAGTTCGAGTCCTCTGCTGTGGGCAAACA
GCTTGACCTGAAGCTGGCTGACAACCTGGACACGCTGAGTGCCGCGGCTGCCAAGCTGCGTGAGGACATGGCTCCCTAC
TACAAGGAGGTGCGCGAGATGTGGCTGAAGGACACCGAGGCTCTGCGTGCTGAGCTCACCAAGGACCTGGAGGAGGTGA
AGGAGAAGATCCGGCCCTTCCTGGACCAGTTCTCCGCCAAGTGGACGGAGGAGCTGGAGCAGTACCGCCAGCGCCTGAC
GCCCGTGGCTCAGGAGCTGAAGGAGCTCACCAAGCAGAAGGTGGAGCTGATGCAGGCCAAGCTGACCCCGGTGGCTGAG
GAGGCGCGGGATCGTCTGCG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5

Area Opaca

Extraembryonic

 
7-9
stage 9

Area Opaca

Extraembryonic

 

Probe 4

GEISHA IdAPOA1.Bertocchini.2008
 NCBIEnsembl
Gene NameAPOA1APOA1_CHICK
Aliasesapolipoprotein AI (put.); putative 
Gene Descriptionapolipoprotein A-IApolipoprotein A-I precursor (Apo-AI) (ApoA-I). [Source:Uniprot/SWISSPROT;Acc:P08250]
Gene Ontologyshow
GO:0005319 lipid transporter activity IEA
GO:0005576 extracellular region IEA
GO:0006629 lipid metabolic process IEA
GO:0006869 lipid transport IEA
GO:0008202 steroid metabolic process IEA
GO:0008203 cholesterol metabolic process IEA
GO:0008289 lipid binding IEA
GO:0042157 lipoprotein metabolic process IEA
show
GO:0005319 lipid transporter activity IEA
GO:0005576 extracellular region IEA
GO:0006629 lipid metabolic process IEA
GO:0006810 transport IEA
GO:0006869 lipid transport IEA
GO:0008202 steroid metabolic process IEA
GO:0008203 cholesterol metabolic process IEA
GO:0008289 lipid binding IEA
GO:0042157 lipoprotein metabolic process IEA
NCBI Nucleotide HitNM_205525 show details
scoreevaluealignment lengthdescription
5600.0572Gallus gallus apolipoprotein A-I (APOA1), mRNA
Ensembl Genome Map
contig view
CitationFederica Bertocchini, Claudio D Stern (2008). A differential screen for genes expressed in the extraembryonic endodermal layer of pre-primitive streak stage chick embryos reveals expression of Apolipoprotein A1 in hypoblast, endoblast and endoderm. Gene Expression Patterns, Volume 8, Issues 7-8, September 2008, Pages 477-480, ISSN 1567-133X, DOI: 10.1016/j.gep.2008.07.001.
CopyrightCopyright © 2008 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205525).
Complete Sequenceshow
TCGGGACGAGCAGTGCGGAGAGCGGCAGGAGAGCGCCGGTTCAGCACGAAGATGAGAGGCGTGCTGGTGACCCTCGCTG
TGCTCTTCCTGACGGGCACCCAGGCCCGCTCCTTCTGGCAGCACGATGAGCCCCAGACGCCCCTGGACCGCATTCGGGA
TATGGTGGACGTCTACCTGGAGACGGTGAAGGCCAGCGGCAAGGATGCCATCGCCCAGTTCGAGTCCTCTGCTGTGGGC
AAACAGCTTGACCTGAAGCTGGCTGACAACCTGGACACGCTGAGTGCCGCGGCTGCCAAGCTGCGTGAGGACATGGCTC
CCTACTACAAGGAGGTGCGCGAGATGTGGCTGAAGGACACCGAGGCTCTGCGTGCTGAGCTCACCAAGGACCTGGAGGA
GGTGAAGGAGAAGATCCGGCCCTTCCTGGACCAGTTCTCCGCCAAGTGGACGGAGGAGCTGGAGCAGTACCGCCAGCGC
CTGACGCCCGTGGCTCAGGAGCTGAAGGAGCTCACCAAGCAGAAGGTGGAGCTGATGCAGGCCAAGCTGACCCCGGTGG
CTGAGGAGGCGCGGGATCGTCTGCGTGGGCACGTGGAGGAGCTGCGCAAGAACCTGGCGCCATACAGCGATGAGCTGCG
GCAGAAGCTGAGCCAGAAGCTGGAGGAGATCCGTGAGAAGGGCATCCCCCAGGCTTCCGAGTACCAGGCCAAGGTGATG
GAGCAGCTCAGCAACCTGCGTGAGAAGATGACGCCTCTGGTGCAGGAATTCAGGGAGCGCCTCACCCCCTATGCTGAGA
ACCTCAAGAACCGCTTGATCTCCTTCCTGGACGAACTCCAGAAGTCCGTGGCCTGAGCTGCCGGCCCAGGGACTGACCC
CAGCCATGCTGGCCTCCGGGAGTCCTCGGGGACCCCTCCTTAATCTCCTCTCCCCCCCCGACCCGGAGTCCGTCTCAGC
TTTGCCATTCTTTTGTCAAATAAACATGACTTAAGTTATTGGAGCTC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
stage 1
stage 1
stage 1
stage 1
stage 1
stage 2
stage 3
stage 3
stage 3

Germinal Crescent

Hypoblast

Endoblast

Late XIII EG&K

Stage XI EG&K

Stage XII EG&K

Stage XII/XIII EG&K

Stage XIII EG&K

Stage XIV EG&K

4-6
stage 4
stage 4
stage 5
stage 5
stage 6

Early Endoderm

Extraembryonic

extra-embryonic lower layer

extraembryonic lower layer

7-12
stage 8
stage 9
stage 12

Anterior Intestinal Portal

Early Endoderm

extra-embryonic lower layer

extra-embryonic lower layer

13-16
stage 13
stage 14
stage 16

Anterior Intestinal Portal

Endoderm

Liver

 
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