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A chicken embryo gene expression database 		 
GEISHA - A Chicken Embryo Gene Expression Database
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Gene Expression Report
GEISHA IdChEST717l23
 NCBIEnsembl
Gene NameCTCFCTCF_CHICK
Gene DescriptionCCCTC-binding factor (zinc finger protein)Transcriptional repressor CTCF (CCCTC-binding factor) (CTCFL paralog) (11-zinc finger protein). [Source:Uniprot/SWISSPROT;Acc:Q08705]
Gene Ontologyshow
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IPI
GO:0005622 intracellular IEA
GO:0005634 nucleus IEA
GO:0006349 genetic imprinting IEA
GO:0006350 transcription IEA
GO:0008270 zinc ion binding IEA
GO:0010216 maintenance of DNA methylation IEA
GO:0045893 positive regulation of transcription, DNA-dependent IEA
GO:0046872 metal ion binding IEA
show
GO:0003676 nucleic acid binding IEA
GO:0003677 DNA binding IEA
GO:0003700 transcription factor activity IEA
GO:0005515 protein binding IPI
GO:0005622 intracellular IEA
GO:0005634 nucleus IEA
GO:0006306 DNA methylation IEA
GO:0006349 genetic imprinting IEA
GO:0006350 transcription IEA
GO:0006355 regulation of transcription, DNA-dependent IEA
GO:0008270 zinc ion binding IEA
GO:0010216 maintenance of DNA methylation IEA
GO:0045893 positive regulation of transcription, DNA-dependent IEA
GO:0046872 metal ion binding IEA
NCBI Nucleotide HitNM_205332 show details
scoreevaluealignment lengthdescription
8590.0867Gallus gallus CCCTC-binding factor (zinc finger protein) (CTCF), mRNA
Ensembl Genome Map
contig view
Commentsubiquitous stage 12-22.
5' Sequenceshow
CACGCAATCATTCAGGTTGAAGACCAGAACACTGGTGAAATCGAAAACATTATAGTAGAAGTAAAGAAAGAACCTGATG
CAGAAACAGTAGAGGAAGAGGAGGAAGCTCAGCCTGCTGTAGTGGAAGCTCCAAACGGAGACCTCACTCCTGAGATGAT
TCTCAGCATGATGGACCGGTGATGGAGGAAGACCACGCCGGATGACTGAACTGGCCTGGGCTGTGTTTAAGCGGCTCAA
ATCTATTTTTCCTTTTACCTTTTTTTCTTGGCTTTGGGAAATGCATCATTTTAGACCATTTTACCAAACATACTGGGAA
ATAAAACTTCAAAATGATGTTAGAATGTGATTTAACTAGAACTTGCTGTTTTATGTTAGCATTACAGGATCATGGAACA
TTAGGAAATGCTTCGGAGTCCATGAGGGTTTCCCGTGAGGTGCTTGATTAGCTTTGTTCTGAGCTGCATTGTAAACAGG
GTCCTCGGACGGCCAGCTTTACGTGCAACGAGTTTTATGATACAGAAGTGGAAGCCTTGACTAGAGTATGTGGTAAACC
ACTCCGGACTTTGCCCTTCCAGTTCCCAGAGTCCTTGAGCCTCCTTCTCTCAGTAGTGTTTTTAACTGTAAATGCAGAC
TTGGGAGGGTTCTAGACTTTTTAAATGTTTTTTGCTTTCCCCCCACTGACTAGCTCTGGTTCTCCAAGTCGGCTGCACA
CGGTAGTTTTGGCATGCTCCAACTGGTTTCTGTCCTTAATATGCTTTGCTTTCTGCAAAGCATTTCTGTAATGGTCAAG
CTTGTAAATAACTTTTTTTTTTTTTTACATTTTAATCTTTTTCCATTAATTAAGAGGTATGCAAAAATACAGTTGAAAT
A
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 6

Early Mesoderm

Primitive Streak

 
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