GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

SEMA3A
semaphorin 3A

Gene
Official SymbolSEMA3A
Official Full Namesemaphorin 3A
CGNC ID4946
also known asCOLL-1, semaphorin-3A, semaphorin-3A|collapsin|collapsin-1|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204977
PolypeptideNP_990308
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.487
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly36846FBgn0011260
Human10371ENSG00000075213MIM:603961
Mouse20346ENSMUSG00000028883All phenotypic alleles (8):Chemically induced(1) Targeted, knock-out(2) Targeted, other(5) MGI:107558
Xenopus100494110, 378645966368
Zebrafish30266, 30267ENSDARG00000019235, ENSDARG00000042210ZDB-GENE-991209-3, ZDB-GENE-991209-6ZFIN:ZDB-GENE-991209-3, ZFIN:ZDB-GENE-991209-6
Gene Ontology
Molecular Functionreceptor activity
Biological Processcell differentiation, nervous system development
Cellular Componentextracellular region, membrane
Links to other databases
Entrez Gene395825
Ensembl GeneENSGALG00000006560
KEGGgga:395825

Entry 1

GEISHA IdSema3A.Lwigale.2007Data SourcePublication
Complete cDNA Template Probeshow
CGTGAAAATGCGATTGATGGAGAGCACACTGGAAAAGCCACTCATGCCAGAATAGGGCAGATCTGTAAGAATGACTTTG
GTGGACACAGGAGCCTTGTTAACAAATGGACAACTTTCCTCAAAGCACGTCTGATTTGTTCTGTGCCAGGACCCAATGG
TATTGACACACACTTTGATGAATTACAGGACGTGTTCCTAATGAACTCTAAGGACCCTAAAAATCCAATAGTGTATGGA
GTGTTTACAACTTCCAGTAATATCTTCAAGGGATCAGCAGTATGTATGTACAGCATGACTGATGTGAGGAGGGTATTTC
TTGGCCCCTATGCCCACCGAGATGGCCCAAACTACCAGTGGGTTCCCTACCAAGGGCGAGTTCCATATCCACGGCCAGG
AACTTGCCCCAGTAAAACATTTGGCGGCTTTGACTCCACCAAGGACCTTCCTGATGAAGTTATAACATTTGCAAGAAGT
CATCCTGCCATGTATAACCCAGTATTCCCCATCAACAGCCGTCCAAT
CitationLwigale PY, Bronner-Fraser M. Lens-derived Semaphorin3A regulates sensory innervation of the cornea. Dev Biol. 2007 Jun 15;306(2):750-9. Epub 2007 Apr 18.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsAuthors said: Sema3A; forward 5′-cgtgaaaatgcgattgatggagag-3′, reverse 5′-attggacggctgttgatggg-3′) used as template for sense and antisense probe synthesis. From this, probe was determined from NM_204977.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 26
Eye
Lens
Retina
 
31-36
stage 34
stage 36
Eye
Lens
Retina
 

Entry 2

GEISHA IdSema3A.Masuda.2003Data SourcePublication
Complete cDNA Template Probeshow
GCTGATGGAAGACTTTGTTACTTGTTTCTAGCTGGGAGCGACCCAAAGAGGATTATGTTATGGGCAGAAGATGTTATTT
ATGTTGCCTGAAGTTCCCCGGCGGCGCCCGGCAGGACGGGGAGCGCCGCGGCTCCGGCTCGCAGGGACCCTACAGTGGC
TGCTGCAGCATGGGCTGGCTCAGGGGGATTGCCTTGCTTTCCTTGGGAGTATTACTAGCAGGAAGAGTGAACTGCCAGC
ATGTGAAGAATAACGTGCCAAGACTCAAATTATCCTATAAAGAAATGTTGGAATCCAATAATATAGTCAATTTCAATGG
ACTAGCTAATAGTTCCAGTTACCATACTTTCCTCTTGGATGAAGAACGAAGTCGGCTGTATGTTGGAGCAAAAGACCAC
ATATTTTCTTTCAACCTGGTTAACATCAAGGAATATCAAAAGATTGTTTGGCCTGTATCTCATTCCCGAAGGGATGAGT
GTAAGTGGGCTGGAAAAGATATTCTGAGAGAATGTGCTAATTTCATCAAGGTGCTTAAGACTTATAACCAAACACACTT
GTACGCTTGTGGAACGGGGGCTTTTCATCCCATGTGCACTTATATTGAAGTTGGAAGCCATCCTGAGGACAACATTTTT
AGGATGGAAGATTCACATTTTGAAAACGGCCGAGGGAAAAGCCCTTACGATCCTAAATTGCTGACAGCTTCTCTTTTAG
TAGATGGAGAATTGTACTCTGGCACAGCAGCAGACTTCATGGGCAGAGACTTTGCCATTTTCCGAACTCTGGGGCATCA
CCATCCAATCAGAACAGAGCAGCATGACTCCCGGTGGCTAAACGATCCCAGATTTATTAGTGCTCACCTGATACCTGAA
AGTGATAATCCAGAAGATGACAAAATCTATTTCTTCTTTCGTGAAAATGCGATTGATGGAGAGCACACTGGAAAAGCCA
CTCATGCCAGAATAGGGCAGATCTGTAAGAATGACTTTGGTGGACACAGGAGCCTTGTTAACAAATGGACAACTTTCCT
CAAAGCACGTCTGATTTGTTCTGTGCCAGGACCCAATGGTATTGACACACACTTTGATGAATTACAGGACGTGTTCCTA
ATGAACTCTAAGGACCCTAAAAATCCAATAGTGTATGGAGTGTTTACAACTTCCAGTAATATCTTCAAGGGATCAGCAG
TATGTATGTACAGCATGACTGATGTGAGGAGGGTATTTCTTGGCCCCTATGCCCACCGAGATGGCCCAAACTACCAGTG
GGTTCCCTACCAAGGGCGAGTTCCATATCCACGGCCAGGAACTTGCCCCAGTAAAACATTTGGCGGCTTTGACTCCACC
AAGGACCTTCCTGATGAAGTTATAACATTTGCAAGAAGTCATCCTGCCATGTATAACCCAGTATTCCCCATCAACAGCC
GTCCAATCATGATCAAAACGGATGTAGATTACCAGTTCACACAGATAGTAGTAGATCGAGTAGATGCAGAAGATGGTCA
ATACGATGTTATGTTCATTGGCACAGATATTGGAACAGTTCTTAAAGTGGTTTCCATTCCTAAGGAGACTTGGCATGAA
TTAGAAGAAGTCTTGCTGGAAGAAATGACCGTCTTTCGGGAACCCACTGTTATTTCAGCAATGAAGATTTCCACAAAAC
AGCAACAGCTCTACATTGGCTCAGCCACCGGAGTTTCACAGCTTCCTTTACACCGCTGTGATGTCTATGGAAAAGCATG
TGCTGAGTGTTGTCTTGCAAGAGACCCCTACTGCGCCTGGGATGGTTCATCTTGCTCACGTTACTTTCCCACTGCTAAG
AGACGTACTAGGCGACAAGACATCCGAAATGGAGATCCCCTCACTCACTGCTCAGACCTGCAGCATCATGATAACCCAA
GTGGTCAGACCCTGGAGGAAAAGATTATTTATGGAGTAGAGAATAGCAGCACTTTTCTTGAGTGCAGTCCAAAATCTCA
ACGTGCCATAGTCTACTGGCAATTCCAGAAGCAAAATGATGACCACAAAGTTGAGATAAAAGTGGATGATCGAATGATC
CGGACAGAACAGGGCCTATTGCTACGAAGTCTTCAACGGAGAGACTCTGGTATTTATTTTTGTCATGCTGTGGAGCATG
GCTTCATTCAAACTTTGCTCAAAGTGACACTGGAAGTAATTGATACTGACCACTTGGAAGAGCTGCTCCATAAGGAAGA
AGACGCCGATGCCTCCAAGACCAAGGATGCTACCAATAGCATGACTCCTAGTCAAAAGATCTGGTATAGAGACTTCATG
CAGTTAATCAATCACCCCAATCTCAACACAATGGATGAATTCTGTGAGCAGGTTTGGAAAAGAGACCGCAAGCAGCGCC
GGCAAAGGCCTGCCAATGCGCAGGTGAACACAAATAAGTGGAAGCACCTACAAGAGAATAAAAAAGGTAGGAATAGGAG
GACCCATGAATTTGAGAGGGCACCACGGAGTGTCTGAGCTACATTACCTCTAGAAACCTCATCTAAGTAGAAACTTGTA
TAGACAGATAACTGGAAAAAAAATGCAATATACATGAACTTTTTCATGGCATTAAGTGGATGTTTACAAGAGTTGAAAG
CTCAAACAATTTCCACCGGGTTTAAATACAATATATTTCTAACTTTCCTAGTAAGTCCTTCGTCTCTGCTCTGATTCTA
AGACCAGGTAGACCAGAGTTTCAAGGATGAACACTCAGCTGGACATAGCTTACTGCTCAAAAAGTTCTACAAGAGTTCA
GCAGGCAGGTTTTGCTTTCTCTGTTGCCTGAGATATAAATGAAATGCTGTATTTCATGCTGTCGTCTTCAAGAAAAACA
AAACCCACTTTTCATCATCAGCACCACCATTCCTAGACTATGTATAAAACTGCATGAACTCATTAAGCTGATGAATGTC
TAAACACGTGATTGGACACAAGGATTTGTTCTTGTTTTGTCTACCAGTTCTCCTGTTTATGAGTACTAGAAGAGGAAAA
ACAATGCTGAATGAGATTGCGGAAATCTTAACAACATAAGCCATTCATCATCTAGAAGAACAAAAAAATGTGGAGTACA
CTGGCCTACTACTGATGACTTCTTTCAGCTTTGATCTAAAGATGTATTTTATTAAAACTATAATTTAAATATACCATGA
AAAATATGCAGCAAACATTAGCTCTTTTCTAAAATAGATTAGCCTCTTTGTCTTAGAAATATTGTACTTCCTAATTATT
GGTTTAGAGGGGAAAAAAAAAAAA
CitationMasuda T, Tsuji H, Taniguchi M, Yagi T, Tessier-Lavigne M, Fujisawa H, Okado N, Shiga T. Differential non-target-derived repulsive signals play a critical role in shaping initial axonal growth of dorsal root ganglion neurons. Dev Biol. 2003 Feb 15;254(2):289-302.
CopyrightCopyright © 2003 Elsevier Science (USA). All rights reserved.
CommentsInsufficient information provided in publication to verify the exact sequence used to synthesize probe. The sequence below was obtained from NCBI (NM_204977).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 18
Dermomyotome
Notochord
Surface Ectoderm
Epidermis
19-21
stage 21
stage 21
Dermatome
Myotome
Notochord
Spinal Cord
Surface Ectoderm
Epidermis

Entry 3

GEISHA IdSema3A.Riley.2010Data SourcePublication
Complete cDNA Template Probeshow
GCTGATGGAAGACTTTGTTACTTGTTTCTAGCTGGGAGCGACCCAAAGAGGATTATGTTATGGGCAGAAGATGTTATTT
ATGTTGCCTGAAGTTCCCCGGCGGCGCCCGGCAGGACGGGGAGCGCCGCGGCTCCGGCTCGCAGGGACCCTACAGTGGC
TGCTGCAGCATGGGCTGGCTCAGGGGGATTGCCTTGCTTTCCTTGGGAGTATTACTAGCAGGAAGAGTGAACTGCCAGC
ATGTGAAGAATAACGTGCCAAGACTCAAATTATCCTATAAAGAAATGTTGGAATCCAATAATATAGTCAATTTCAATGG
ACTAGCTAATAGTTCCAGTTACCATACTTTCCTCTTGGATGAAGAACGAAGTCGGCTGTATGTTGGAGCAAAAGACCAC
ATATTTTCTTTCAACCTGGTTAACATCAAGGAATATCAAAAGATTGTTTGGCCTGTATCTCATTCCCGAAGGGATGAGT
GTAAGTGGGCTGGAAAAGATATTCTGAGAGAATGTGCTAATTTCATCAAGGTGCTTAAGACTTATAACCAAACACACTT
GTACGCTTGTGGAACGGGGGCTTTTCATCCCATGTGCACTTATATTGAAGTTGGAAGCCATCCTGAGGACAACATTTTT
AGGATGGAAGATTCACATTTTGAAAACGGCCGAGGGAAAAGCCCTTACGATCCTAAATTGCTGACAGCTTCTCTTTTAG
TAGATGGAGAATTGTACTCTGGCACAGCAGCAGACTTCATGGGCAGAGACTTTGCCATTTTCCGAACTCTGGGGCATCA
CCATCCAATCAGAACAGAGCAGCATGACTCCCGGTGGCTAAACGATCCCAGATTTATTAGTGCTCACCTGATACCTGAA
AGTGATAATCCAGAAGATGACAAAATCTATTTCTTCTTTCGTGAAAATGCGATTGATGGAGAGCACACTGGAAAAGCCA
CTCATGCCAGAATAGGGCAGATCTGTAAGAATGACTTTGGTGGACACAGGAGCCTTGTTAACAAATGGACAACTTTCCT
CAAAGCACGTCTGATTTGTTCTGTGCCAGGACCCAATGGTATTGACACACACTTTGATGAATTACAGGACGTGTTCCTA
ATGAACTCTAAGGACCCTAAAAATCCAATAGTGTATGGAGTGTTTACAACTTCCAGTAATATCTTCAAGGGATCAGCAG
TATGTATGTACAGCATGACTGATGTGAGGAGGGTATTTCTTGGCCCCTATGCCCACCGAGATGGCCCAAACTACCAGTG
GGTTCCCTACCAAGGGCGAGTTCCATATCCACGGCCAGGAACTTGCCCCAGTAAAACATTTGGCGGCTTTGACTCCACC
AAGGACCTTCCTGATGAAGTTATAACATTTGCAAGAAGTCATCCTGCCATGTATAACCCAGTATTCCCCATCAACAGCC
GTCCAATCATGATCAAAACGGATGTAGATTACCAGTTCACACAGATAGTAGTAGATCGAGTAGATGCAGAAGATGGTCA
ATACGATGTTATGTTCATTGGCACAGATATTGGAACAGTTCTTAAAGTGGTTTCCATTCCTAAGGAGACTTGGCATGAA
TTAGAAGAAGTCTTGCTGGAAGAAATGACCGTCTTTCGGGAACCCACTGTTATTTCAGCAATGAAGATTTCCACAAAAC
AGCAACAGCTCTACATTGGCTCAGCCACCGGAGTTTCACAGCTTCCTTTACACCGCTGTGATGTCTATGGAAAAGCATG
TGCTGAGTGTTGTCTTGCAAGAGACCCCTACTGCGCCTGGGATGGTTCATCTTGCTCACGTTACTTTCCCACTGCTAAG
AGACGTACTAGGCGACAAGACATCCGAAATGGAGATCCCCTCACTCACTGCTCAGACCTGCAGCATCATGATAACCCAA
GTGGTCAGACCCTGGAGGAAAAGATTATTTATGGAGTAGAGAATAGCAGCACTTTTCTTGAGTGCAGTCCAAAATCTCA
ACGTGCCATAGTCTACTGGCAATTCCAGAAGCAAAATGATGACCACAAAGTTGAGATAAAAGTGGATGATCGAATGATC
CGGACAGAACAGGGCCTATTGCTACGAAGTCTTCAACGGAGAGACTCTGGTATTTATTTTTGTCATGCTGTGGAGCATG
GCTTCATTCAAACTTTGCTCAAAGTGACACTGGAAGTAATTGATACTGACCACTTGGAAGAGCTGCTCCATAAGGAAGA
AGACGCCGATGCCTCCAAGACCAAGGATGCTACCAATAGCATGACTCCTAGTCAAAAGATCTGGTATAGAGACTTCATG
CAGTTAATCAATCACCCCAATCTCAACACAATGGATGAATTCTGTGAGCAGGTTTGGAAAAGAGACCGCAAGCAGCGCC
GGCAAAGGCCTGCCAATGCGCAGGTGAACACAAATAAGTGGAAGCACCTACAAGAGAATAAAAAAGGTAGGAATAGGAG
GACCCATGAATTTGAGAGGGCACCACGGAGTGTCTGAGCTACATTACCTCTAGAAACCTCATCTAAGTAGAAACTTGTA
TAGACAGATAACTGGAAAAAAAATGCAATATACATGAACTTTTTCATGGCATTAAGTGGATGTTTACAAGAGTTGAAAG
CTCAAACAATTTCCACCGGGTTTAAATACAATATATTTCTAACTTTCCTAGTAAGTCCTTCGTCTCTGCTCTGATTCTA
AGACCAGGTAGACCAGAGTTTCAAGGATGAACACTCAGCTGGACATAGCTTACTGCTCAAAAAGTTCTACAAGAGTTCA
GCAGGCAGGTTTTGCTTTCTCTGTTGCCTGAGATATAAATGAAATGCTGTATTTCATGCTGTCGTCTTCAAGAAAAACA
AAACCCACTTTTCATCATCAGCACCACCATTCCTAGACTATGTATAAAACTGCATGAACTCATTAAGCTGATGAATGTC
TAAACACGTGATTGGACACAAGGATTTGTTCTTGTTTTGTCTACCAGTTCTCCTGTTTATGAGTACTAGAAGAGGAAAA
ACAATGCTGAATGAGATTGCGGAAATCTTAACAACATAAGCCATTCATCATCTAGAAGAACAAAAAAATGTGGAGTACA
CTGGCCTACTACTGATGACTTCTTTCAGCTTTGATCTAAAGATGTATTTTATTAAAACTATAATTTAAATATACCATGA
AAAATATGCAGCAAACATTAGCTCTTTTCTAAAATAGATTAGCCTCTTTGTCTTAGAAATATTGTACTTCCTAATTATT
GGTTTAGAGGGGAAAAAAAAAAAA
CitationRiley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204977.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 13
stage 17
Midbrain
 
19-20
stage 20
Midbrain
 

Entry 4

GEISHA IdSEMA3A.Kubilus.2010Data SourcePublication
Complete cDNA Template Probeshow
TTCCATATCCACGGCCAGGAACTTGCCCCAGTAAAACATTTGGCGGCTTTGACTCCACCAAGGACCTTCCTGATGAAGT
TATAACATTTGCAAGAAGTCATCCTGCCATGTATAACCCAGTATTCCCCATCAACAGCCGTCCAATCATGATCAAAACG
GATGTAGATTACCAGTTCACACAGATAGTAGTAGATCGAGTAGATGCAGAAGATGGTCAATACGATGTTATGTTCATTG
GCACAGATATTGGAACAGTTCTTAAAGTGGTTTCCATTCCTAAGGAGACTTGGCATGAATTAGAAGAAGTCTTGCTGGA
AGAAATGACCGTCTTTCGGGAACCCACTGTTATTTCAGCAATGAAGATTTCCACAAAACAGCAACAGCTCTACATTGGC
TCAGCCACCGGAGTTTCACAGCTTCCTTTACACCGCTGTGATGTCTATGGAAAAGCATGTGCTGAGTGTTGTCTTGCAA
GAGACCCCTACTGCGCCTGGGATGGTTCATCTTGCTCACGTTACTTTCCCACTGCTAAGAGACGTACTAGGCGACAAGA
CATCCGAAATGGAGATCCCCTCACTCACTGCTCAGACCTGCAGCATCATGATAACCCAAGTGGTCAGACCCTGGAGGAA
AAGATTATTTATGGAGTAGAGAATAGCAGCACTTTTCTTGAGTGCAGTCCAAAATCTCAACGTGCCATAGTCTACTGGC
AATTCCAGAAGCAAAATGATGACCACAAAGTTGAGATAAAAGTGGATGATCGAATGATCCGGACAGAACAGGGCCTATT
GCTACGAAGTCTTCAACGGAGAGACTCTGGTATTTATTTTTGTCATGCTGTGGAGCATGGCTTCATTCAAACTTTGCTC
AAAGTGACACTGGAAGTAATTGATACTGACCACTTGGAAGAGCTGCTCCATAAGGAAGAAGACGCCGATGCCT
CitationKubilus JK, Linsenmayer TF. Developmental guidance of embryonic corneal innervation: roles of Semaphorin3A and Slit2. Dev Biol. 2010 Aug 1;344(1):172-84. Epub 2010 May 18.
CopyrightCopyright © 2011 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204977.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
Eye
 
31-40
stage 31
stage 40
Eye
Lens
 

Entry 5

GEISHA IdSEMA3A.McLennan.2010Data SourcePublication
Complete cDNA Template Probeshow
GCTGATGGAAGACTTTGTTACTTGTTTCTAGCTGGGAGCGACCCAAAGAGGATTATGTTATGGGCAGAAGATGTTATTT
ATGTTGCCTGAAGTTCCCCGGCGGCGCCCGGCAGGACGGGGAGCGCCGCGGCTCCGGCTCGCAGGGACCCTACAGTGGC
TGCTGCAGCATGGGCTGGCTCAGGGGGATTGCCTTGCTTTCCTTGGGAGTATTACTAGCAGGAAGAGTGAACTGCCAGC
ATGTGAAGAATAACGTGCCAAGACTCAAATTATCCTATAAAGAAATGTTGGAATCCAATAATATAGTCAATTTCAATGG
ACTAGCTAATAGTTCCAGTTACCATACTTTCCTCTTGGATGAAGAACGAAGTCGGCTGTATGTTGGAGCAAAAGACCAC
ATATTTTCTTTCAACCTGGTTAACATCAAGGAATATCAAAAGATTGTTTGGCCTGTATCTCATTCCCGAAGGGATGAGT
GTAAGTGGGCTGGAAAAGATATTCTGAGAGAATGTGCTAATTTCATCAAGGTGCTTAAGACTTATAACCAAACACACTT
GTACGCTTGTGGAACGGGGGCTTTTCATCCCATGTGCACTTATATTGAAGTTGGAAGCCATCCTGAGGACAACATTTTT
AGGATGGAAGATTCACATTTTGAAAACGGCCGAGGGAAAAGCCCTTACGATCCTAAATTGCTGACAGCTTCTCTTTTAG
TAGATGGAGAATTGTACTCTGGCACAGCAGCAGACTTCATGGGCAGAGACTTTGCCATTTTCCGAACTCTGGGGCATCA
CCATCCAATCAGAACAGAGCAGCATGACTCCCGGTGGCTAAACGATCCCAGATTTATTAGTGCTCACCTGATACCTGAA
AGTGATAATCCAGAAGATGACAAAATCTATTTCTTCTTTCGTGAAAATGCGATTGATGGAGAGCACACTGGAAAAGCCA
CTCATGCCAGAATAGGGCAGATCTGTAAGAATGACTTTGGTGGACACAGGAGCCTTGTTAACAAATGGACAACTTTCCT
CAAAGCACGTCTGATTTGTTCTGTGCCAGGACCCAATGGTATTGACACACACTTTGATGAATTACAGGACGTGTTCCTA
ATGAACTCTAAGGACCCTAAAAATCCAATAGTGTATGGAGTGTTTACAACTTCCAGTAATATCTTCAAGGGATCAGCAG
TATGTATGTACAGCATGACTGATGTGAGGAGGGTATTTCTTGGCCCCTATGCCCACCGAGATGGCCCAAACTACCAGTG
GGTTCCCTACCAAGGGCGAGTTCCATATCCACGGCCAGGAACTTGCCCCAGTAAAACATTTGGCGGCTTTGACTCCACC
AAGGACCTTCCTGATGAAGTTATAACATTTGCAAGAAGTCATCCTGCCATGTATAACCCAGTATTCCCCATCAACAGCC
GTCCAATCATGATCAAAACGGATGTAGATTACCAGTTCACACAGATAGTAGTAGATCGAGTAGATGCAGAAGATGGTCA
ATACGATGTTATGTTCATTGGCACAGATATTGGAACAGTTCTTAAAGTGGTTTCCATTCCTAAGGAGACTTGGCATGAA
TTAGAAGAAGTCTTGCTGGAAGAAATGACCGTCTTTCGGGAACCCACTGTTATTTCAGCAATGAAGATTTCCACAAAAC
AGCAACAGCTCTACATTGGCTCAGCCACCGGAGTTTCACAGCTTCCTTTACACCGCTGTGATGTCTATGGAAAAGCATG
TGCTGAGTGTTGTCTTGCAAGAGACCCCTACTGCGCCTGGGATGGTTCATCTTGCTCACGTTACTTTCCCACTGCTAAG
AGACGTACTAGGCGACAAGACATCCGAAATGGAGATCCCCTCACTCACTGCTCAGACCTGCAGCATCATGATAACCCAA
GTGGTCAGACCCTGGAGGAAAAGATTATTTATGGAGTAGAGAATAGCAGCACTTTTCTTGAGTGCAGTCCAAAATCTCA
ACGTGCCATAGTCTACTGGCAATTCCAGAAGCAAAATGATGACCACAAAGTTGAGATAAAAGTGGATGATCGAATGATC
CGGACAGAACAGGGCCTATTGCTACGAAGTCTTCAACGGAGAGACTCTGGTATTTATTTTTGTCATGCTGTGGAGCATG
GCTTCATTCAAACTTTGCTCAAAGTGACACTGGAAGTAATTGATACTGACCACTTGGAAGAGCTGCTCCATAAGGAAGA
AGACGCCGATGCCTCCAAGACCAAGGATGCTACCAATAGCATGACTCCTAGTCAAAAGATCTGGTATAGAGACTTCATG
CAGTTAATCAATCACCCCAATCTCAACACAATGGATGAATTCTGTGAGCAGGTTTGGAAAAGAGACCGCAAGCAGCGCC
GGCAAAGGCCTGCCAATGCGCAGGTGAACACAAATAAGTGGAAGCACCTACAAGAGAATAAAAAAGGTAGGAATAGGAG
GACCCATGAATTTGAGAGGGCACCACGGAGTGTCTGAGCTACATTACCTCTAGAAACCTCATCTAAGTAGAAACTTGTA
TAGACAGATAACTGGAAAAAAAATGCAATATACATGAACTTTTTCATGGCATTAAGTGGATGTTTACAAGAGTTGAAAG
CTCAAACAATTTCCACCGGGTTTAAATACAATATATTTCTAACTTTCCTAGTAAGTCCTTCGTCTCTGCTCTGATTCTA
AGACCAGGTAGACCAGAGTTTCAAGGATGAACACTCAGCTGGACATAGCTTACTGCTCAAAAAGTTCTACAAGAGTTCA
GCAGGCAGGTTTTGCTTTCTCTGTTGCCTGAGATATAAATGAAATGCTGTATTTCATGCTGTCGTCTTCAAGAAAAACA
AAACCCACTTTTCATCATCAGCACCACCATTCCTAGACTATGTATAAAACTGCATGAACTCATTAAGCTGATGAATGTC
TAAACACGTGATTGGACACAAGGATTTGTTCTTGTTTTGTCTACCAGTTCTCCTGTTTATGAGTACTAGAAGAGGAAAA
ACAATGCTGAATGAGATTGCGGAAATCTTAACAACATAAGCCATTCATCATCTAGAAGAACAAAAAAATGTGGAGTACA
CTGGCCTACTACTGATGACTTCTTTCAGCTTTGATCTAAAGATGTATTTTATTAAAACTATAATTTAAATATACCATGA
AAAATATGCAGCAAACATTAGCTCTTTTCTAAAATAGATTAGCCTCTTTGTCTTAGAAATATTGTACTTCCTAATTATT
GGTTTAGAGGGGAAAAAAAAAAAA
CitationMcLennan R, Teddy JM, Kasemeier-Kulesa JC, Romine MH, Kulesa PM., Vascular endothelial growth factor (VEGF) regulates cranial neural crest migration in vivo. Dev Biol. 2010 Mar 1;339(1):114-25. Epub 2009 Dec 28.
CopyrightCopyright © 2009 Elsevier Inc. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204977.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
  
13-16
stage 14
stage 14
stage 16
stage 16
stage 16
Dermomyotome
Notochord
 

Entry 6

GEISHA IdSEMA3A.Masuda.2012Data SourcePublication
Complete cDNA Template Probeshow
GCTGATGGAAGACTTTGTTACTTGTTTCTAGCTGGGAGCGACCCAAAGAGGATTATGTTATGGGCAGAAGATGTTATTT
ATGTTGCCTGAAGTTCCCCGGCGGCGCCCGGCAGGACGGGGAGCGCCGCGGCTCCGGCTCGCAGGGACCCTACAGTGGC
TGCTGCAGCATGGGCTGGCTCAGGGGGATTGCCTTGCTTTCCTTGGGAGTATTACTAGCAGGAAGAGTGAACTGCCAGC
ATGTGAAGAATAACGTGCCAAGACTCAAATTATCCTATAAAGAAATGTTGGAATCCAATAATATAGTCAATTTCAATGG
ACTAGCTAATAGTTCCAGTTACCATACTTTCCTCTTGGATGAAGAACGAAGTCGGCTGTATGTTGGAGCAAAAGACCAC
ATATTTTCTTTCAACCTGGTTAACATCAAGGAATATCAAAAGATTGTTTGGCCTGTATCTCATTCCCGAAGGGATGAGT
GTAAGTGGGCTGGAAAAGATATTCTGAGAGAATGTGCTAATTTCATCAAGGTGCTTAAGACTTATAACCAAACACACTT
GTACGCTTGTGGAACGGGGGCTTTTCATCCCATGTGCACTTATATTGAAGTTGGAAGCCATCCTGAGGACAACATTTTT
AGGATGGAAGATTCACATTTTGAAAACGGCCGAGGGAAAAGCCCTTACGATCCTAAATTGCTGACAGCTTCTCTTTTAG
TAGATGGAGAATTGTACTCTGGCACAGCAGCAGACTTCATGGGCAGAGACTTTGCCATTTTCCGAACTCTGGGGCATCA
CCATCCAATCAGAACAGAGCAGCATGACTCCCGGTGGCTAAACGATCCCAGATTTATTAGTGCTCACCTGATACCTGAA
AGTGATAATCCAGAAGATGACAAAATCTATTTCTTCTTTCGTGAAAATGCGATTGATGGAGAGCACACTGGAAAAGCCA
CTCATGCCAGAATAGGGCAGATCTGTAAGAATGACTTTGGTGGACACAGGAGCCTTGTTAACAAATGGACAACTTTCCT
CAAAGCACGTCTGATTTGTTCTGTGCCAGGACCCAATGGTATTGACACACACTTTGATGAATTACAGGACGTGTTCCTA
ATGAACTCTAAGGACCCTAAAAATCCAATAGTGTATGGAGTGTTTACAACTTCCAGTAATATCTTCAAGGGATCAGCAG
TATGTATGTACAGCATGACTGATGTGAGGAGGGTATTTCTTGGCCCCTATGCCCACCGAGATGGCCCAAACTACCAGTG
GGTTCCCTACCAAGGGCGAGTTCCATATCCACGGCCAGGAACTTGCCCCAGTAAAACATTTGGCGGCTTTGACTCCACC
AAGGACCTTCCTGATGAAGTTATAACATTTGCAAGAAGTCATCCTGCCATGTATAACCCAGTATTCCCCATCAACAGCC
GTCCAATCATGATCAAAACGGATGTAGATTACCAGTTCACACAGATAGTAGTAGATCGAGTAGATGCAGAAGATGGTCA
ATACGATGTTATGTTCATTGGCACAGATATTGGAACAGTTCTTAAAGTGGTTTCCATTCCTAAGGAGACTTGGCATGAA
TTAGAAGAAGTCTTGCTGGAAGAAATGACCGTCTTTCGGGAACCCACTGTTATTTCAGCAATGAAGATTTCCACAAAAC
AGCAACAGCTCTACATTGGCTCAGCCACCGGAGTTTCACAGCTTCCTTTACACCGCTGTGATGTCTATGGAAAAGCATG
TGCTGAGTGTTGTCTTGCAAGAGACCCCTACTGCGCCTGGGATGGTTCATCTTGCTCACGTTACTTTCCCACTGCTAAG
AGACGTACTAGGCGACAAGACATCCGAAATGGAGATCCCCTCACTCACTGCTCAGACCTGCAGCATCATGATAACCCAA
GTGGTCAGACCCTGGAGGAAAAGATTATTTATGGAGTAGAGAATAGCAGCACTTTTCTTGAGTGCAGTCCAAAATCTCA
ACGTGCCATAGTCTACTGGCAATTCCAGAAGCAAAATGATGACCACAAAGTTGAGATAAAAGTGGATGATCGAATGATC
CGGACAGAACAGGGCCTATTGCTACGAAGTCTTCAACGGAGAGACTCTGGTATTTATTTTTGTCATGCTGTGGAGCATG
GCTTCATTCAAACTTTGCTCAAAGTGACACTGGAAGTAATTGATACTGACCACTTGGAAGAGCTGCTCCATAAGGAAGA
AGACGCCGATGCCTCCAAGACCAAGGATGCTACCAATAGCATGACTCCTAGTCAAAAGATCTGGTATAGAGACTTCATG
CAGTTAATCAATCACCCCAATCTCAACACAATGGATGAATTCTGTGAGCAGGTTTGGAAAAGAGACCGCAAGCAGCGCC
GGCAAAGGCCTGCCAATGCGCAGGTGAACACAAATAAGTGGAAGCACCTACAAGAGAATAAAAAAGGTAGGAATAGGAG
GACCCATGAATTTGAGAGGGCACCACGGAGTGTCTGAGCTACATTACCTCTAGAAACCTCATCTAAGTAGAAACTTGTA
TAGACAGATAACTGGAAAAAAAATGCAATATACATGAACTTTTTCATGGCATTAAGTGGATGTTTACAAGAGTTGAAAG
CTCAAACAATTTCCACCGGGTTTAAATACAATATATTTCTAACTTTCCTAGTAAGTCCTTCGTCTCTGCTCTGATTCTA
AGACCAGGTAGACCAGAGTTTCAAGGATGAACACTCAGCTGGACATAGCTTACTGCTCAAAAAGTTCTACAAGAGTTCA
GCAGGCAGGTTTTGCTTTCTCTGTTGCCTGAGATATAAATGAAATGCTGTATTTCATGCTGTCGTCTTCAAGAAAAACA
AAACCCACTTTTCATCATCAGCACCACCATTCCTAGACTATGTATAAAACTGCATGAACTCATTAAGCTGATGAATGTC
TAAACACGTGATTGGACACAAGGATTTGTTCTTGTTTTGTCTACCAGTTCTCCTGTTTATGAGTACTAGAAGAGGAAAA
ACAATGCTGAATGAGATTGCGGAAATCTTAACAACATAAGCCATTCATCATCTAGAAGAACAAAAAAATGTGGAGTACA
CTGGCCTACTACTGATGACTTCTTTCAGCTTTGATCTAAAGATGTATTTTATTAAAACTATAATTTAAATATACCATGA
AAAATATGCAGCAAACATTAGCTCTTTTCTAAAATAGATTAGCCTCTTTGTCTTAGAAATATTGTACTTCCTAATTATT
GGTTTAGAGGGGAAAAAAAAAAAA
CitationMasuda T, Sakuma C, Taniguchi M, Kanemoto A, Yoshizawa M, Satomi K, Development of the dorsal ramus of the spinal nerve in the chick embryo: a close relationship between development and expression of guidance cues. Brain Res. 2012 Oct 22;1480:30-40. .
CopyrightCopyright © 2012 Elsevier B.V. All rights reserved
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204977.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 20
stage 20
stage 20
stage 22
stage 22
stage 22
Dermomyotome
Myotome
Notochord
Spinal Cord
Spinal Ganglia and Nerves
anti-Islet-1/2 (brown)
anti-MF-20 (brown)
anti-MF20 (green)
in situ: SEMA3A (magenta)
in situ: SEMA3A(blue)
25-29
stage 26
stage 26
stage 26
stage 29
stage 29
stage 29
Dermomyotome
Myotome
Notochord
Spinal Cord
Spinal Ganglia and Nerves
anti-Islet-1/2 (brown)
anti-MF-20 (brown)
anti-MF20 (green)
in situ: SEMA3A (magenta)
in situ: SEMA3A(blue)

Entry 7

GEISHA IdSEMA3A.Ferrario.2012Data SourcePublication
Complete cDNA Template Probeshow
GCTGATGGAAGACTTTGTTACTTGTTTCTAGCTGGGAGCGACCCAAAGAGGATTATGTTATGGGCAGAAGATGTTATTT
ATGTTGCCTGAAGTTCCCCGGCGGCGCCCGGCAGGACGGGGAGCGCCGCGGCTCCGGCTCGCAGGGACCCTACAGTGGC
TGCTGCAGCATGGGCTGGCTCAGGGGGATTGCCTTGCTTTCCTTGGGAGTATTACTAGCAGGAAGAGTGAACTGCCAGC
ATGTGAAGAATAACGTGCCAAGACTCAAATTATCCTATAAAGAAATGTTGGAATCCAATAATATAGTCAATTTCAATGG
ACTAGCTAATAGTTCCAGTTACCATACTTTCCTCTTGGATGAAGAACGAAGTCGGCTGTATGTTGGAGCAAAAGACCAC
ATATTTTCTTTCAACCTGGTTAACATCAAGGAATATCAAAAGATTGTTTGGCCTGTATCTCATTCCCGAAGGGATGAGT
GTAAGTGGGCTGGAAAAGATATTCTGAGAGAATGTGCTAATTTCATCAAGGTGCTTAAGACTTATAACCAAACACACTT
GTACGCTTGTGGAACGGGGGCTTTTCATCCCATGTGCACTTATATTGAAGTTGGAAGCCATCCTGAGGACAACATTTTT
AGGATGGAAGATTCACATTTTGAAAACGGCCGAGGGAAAAGCCCTTACGATCCTAAATTGCTGACAGCTTCTCTTTTAG
TAGATGGAGAATTGTACTCTGGCACAGCAGCAGACTTCATGGGCAGAGACTTTGCCATTTTCCGAACTCTGGGGCATCA
CCATCCAATCAGAACAGAGCAGCATGACTCCCGGTGGCTAAACGATCCCAGATTTATTAGTGCTCACCTGATACCTGAA
AGTGATAATCCAGAAGATGACAAAATCTATTTCTTCTTTCGTGAAAATGCGATTGATGGAGAGCACACTGGAAAAGCCA
CTCATGCCAGAATAGGGCAGATCTGTAAGAATGACTTTGGTGGACACAGGAGCCTTGTTAACAAATGGACAACTTTCCT
CAAAGCACGTCTGATTTGTTCTGTGCCAGGACCCAATGGTATTGACACACACTTTGATGAATTACAGGACGTGTTCCTA
ATGAACTCTAAGGACCCTAAAAATCCAATAGTGTATGGAGTGTTTACAACTTCCAGTAATATCTTCAAGGGATCAGCAG
TATGTATGTACAGCATGACTGATGTGAGGAGGGTATTTCTTGGCCCCTATGCCCACCGAGATGGCCCAAACTACCAGTG
GGTTCCCTACCAAGGGCGAGTTCCATATCCACGGCCAGGAACTTGCCCCAGTAAAACATTTGGCGGCTTTGACTCCACC
AAGGACCTTCCTGATGAAGTTATAACATTTGCAAGAAGTCATCCTGCCATGTATAACCCAGTATTCCCCATCAACAGCC
GTCCAATCATGATCAAAACGGATGTAGATTACCAGTTCACACAGATAGTAGTAGATCGAGTAGATGCAGAAGATGGTCA
ATACGATGTTATGTTCATTGGCACAGATATTGGAACAGTTCTTAAAGTGGTTTCCATTCCTAAGGAGACTTGGCATGAA
TTAGAAGAAGTCTTGCTGGAAGAAATGACCGTCTTTCGGGAACCCACTGTTATTTCAGCAATGAAGATTTCCACAAAAC
AGCAACAGCTCTACATTGGCTCAGCCACCGGAGTTTCACAGCTTCCTTTACACCGCTGTGATGTCTATGGAAAAGCATG
TGCTGAGTGTTGTCTTGCAAGAGACCCCTACTGCGCCTGGGATGGTTCATCTTGCTCACGTTACTTTCCCACTGCTAAG
AGACGTACTAGGCGACAAGACATCCGAAATGGAGATCCCCTCACTCACTGCTCAGACCTGCAGCATCATGATAACCCAA
GTGGTCAGACCCTGGAGGAAAAGATTATTTATGGAGTAGAGAATAGCAGCACTTTTCTTGAGTGCAGTCCAAAATCTCA
ACGTGCCATAGTCTACTGGCAATTCCAGAAGCAAAATGATGACCACAAAGTTGAGATAAAAGTGGATGATCGAATGATC
CGGACAGAACAGGGCCTATTGCTACGAAGTCTTCAACGGAGAGACTCTGGTATTTATTTTTGTCATGCTGTGGAGCATG
GCTTCATTCAAACTTTGCTCAAAGTGACACTGGAAGTAATTGATACTGACCACTTGGAAGAGCTGCTCCATAAGGAAGA
AGACGCCGATGCCTCCAAGACCAAGGATGCTACCAATAGCATGACTCCTAGTCAAAAGATCTGGTATAGAGACTTCATG
CAGTTAATCAATCACCCCAATCTCAACACAATGGATGAATTCTGTGAGCAGGTTTGGAAAAGAGACCGCAAGCAGCGCC
GGCAAAGGCCTGCCAATGCGCAGGTGAACACAAATAAGTGGAAGCACCTACAAGAGAATAAAAAAGGTAGGAATAGGAG
GACCCATGAATTTGAGAGGGCACCACGGAGTGTCTGAGCTACATTACCTCTAGAAACCTCATCTAAGTAGAAACTTGTA
TAGACAGATAACTGGAAAAAAAATGCAATATACATGAACTTTTTCATGGCATTAAGTGGATGTTTACAAGAGTTGAAAG
CTCAAACAATTTCCACCGGGTTTAAATACAATATATTTCTAACTTTCCTAGTAAGTCCTTCGTCTCTGCTCTGATTCTA
AGACCAGGTAGACCAGAGTTTCAAGGATGAACACTCAGCTGGACATAGCTTACTGCTCAAAAAGTTCTACAAGAGTTCA
GCAGGCAGGTTTTGCTTTCTCTGTTGCCTGAGATATAAATGAAATGCTGTATTTCATGCTGTCGTCTTCAAGAAAAACA
AAACCCACTTTTCATCATCAGCACCACCATTCCTAGACTATGTATAAAACTGCATGAACTCATTAAGCTGATGAATGTC
TAAACACGTGATTGGACACAAGGATTTGTTCTTGTTTTGTCTACCAGTTCTCCTGTTTATGAGTACTAGAAGAGGAAAA
ACAATGCTGAATGAGATTGCGGAAATCTTAACAACATAAGCCATTCATCATCTAGAAGAACAAAAAAATGTGGAGTACA
CTGGCCTACTACTGATGACTTCTTTCAGCTTTGATCTAAAGATGTATTTTATTAAAACTATAATTTAAATATACCATGA
AAAATATGCAGCAAACATTAGCTCTTTTCTAAAATAGATTAGCCTCTTTGTCTTAGAAATATTGTACTTCCTAATTATT
GGTTTAGAGGGGAAAAAAAAAAAA
CitationFerrario JE, Baskaran P, Clark C, Hendry A, Lerner O, Hintze M, Allen J, Chilton JK, Guthrie S. Axon guidance in the developing ocular motor system and Duane retraction syndrome depends on Semaphorin signaling via alpha2-chimaerin. Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14669-74.
CopyrightCopyright © 2012 National Academy of Sciences.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204977.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 24
stage 24
stage 24
Head Mesenchyme
Rhombomeres
 
25-29
stage 29
stage 29
stage 29
stage 29
Eye
dorsal oblique (DO)
dorsal rectus (DR)
lateral rectus (LR)
ventral oblique (VO)
ventral rectus (VR)/ medial rectus (MR)
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.487

Mouse

EmageMGI:107558
EurexpressMGI:107558
MGI GXDMGI:107558

Frog

Xenbase966368

Fruit Fly

BDGPFBgn0011260

Zebra Finch

ZEBrASEMA3A

Zebrafish

ZFINZDB-GENE-991209-3, ZDB-GENE-991209-6
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona