GEISHA - A Chicken Embryo Gene Expression Database
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LDB2
LIM domain binding 2

Gene
Official SymbolLDB2
Official Full NameLIM domain binding 2
CGNC ID49412
also known asCLIM-1, LIM domain-binding protein 2|LDB-2|LIM domain binding protein CLIM-1|LIM domain-binding factor CLIM1|cLdb2|carboxyl-terminal LIM domain-binding protein 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204829
PolypeptideNP_990160
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3673
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly37837FBgn0013764
Human9079ENSG00000169744MIM:603450
Mouse16826ENSMUSG00000039706All phenotypic alleles (1):Targeted, knock-out(1) MGI:894670
Xenopus100491396, 734228490278
Zebrafish30577, 30578ENSDARG00000019579, ENSDARG00000034896ZDB-GENE-990415-136, ZDB-GENE-990415-137ZFIN:ZDB-GENE-990415-136, ZFIN:ZDB-GENE-990415-137
Gene Ontology
Molecular FunctionLIM domain binding, transcription cofactor activity
Biological Processbiological_process
Cellular Componentnucleus
Links to other databases
Entrez Gene395631
Ensembl GeneENSGALG00000014485
KEGGgga:395631

Entry 1

GEISHA IdLDB2.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTGGAAGATGGACCAAAGCGATAC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGGGGGTTTTCAGATTTAGTCTCCTGGcDNA Template Length884
Complete cDNA Template Probeshow
TGGAAGATGGACCAAAGCGATACACAATTGGAAGGACCCTCATTCCTCGTTATTTTAGCACTGTCTTTGAAGGAGGTGT
AACAGACCTGTATTACATTCTCAAGCACTCAAAAGAGTCATACCACAACTCATCCATCACAGTGGACTGTGATCAATGC
ACCATGGTCACTCAGCATGGAAAACCCATGTTTACCAAGGTATGCACAGAAGGACGTCTTATCTTGGAGTTTACTTTTG
ATGATCTTATGAGAATAAAAACATGGCACTTTACTATTAGACAATACAGAGAATTAGTCCCACGCAGCATTTTACCCAT
GCATGCACAGGACCCTCAGGTGCTGGAGCAGCTGTCCAAAAACATCACTCGAATGGGTCTGACAAACTTCACCCTCAAC
TACCTCAGGTTGTGTGTAATACTGGAGCCAATGCAGGAACTGATGTCAAGACACAAAACTTACAATCTAAGTCCTCGAG
ACTGCTTGAAGACTTGCTTGTTTCAAAAATGGCAGAGAATGGTGGCCCCACCAGCAGAACCCACAAGACAACCGACAAC
CAAACGGAGGAAAAGGAAAAACTCTACCAGCAGCACTTCGAACAGCAGTGCTGGGAACAACGCAAATAGTACCAACAGC
AAGAAAAAGTCAGCTGCTGCAAACCTGAGTCTATCAAGTCAGGATGTGATGGTGGTAGGAGAACCAACTCTGATGGGAG
GCGAATTTGGAGACGAAGACGAAAGGCTTATCACTAGATTAGAGAATACACAGTATGATGCAGCAAACGGCATGGATGA
TGAAGAAGATTTCAACAATTCACCTGCACTGGGAAATAACAGCCCGTGGAACAGCAAACCTCCTGCTAACCAGGAGACT
AAATCTGAAAACCCC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 10
stage 10
Head Mesenchyme
 
13-18
stage 15
stage 15
stage 15
stage 15
stage 16
stage 16
Aorta
Blood Vessels
Extraembryonic Blood Vessels
Foregut
Head Mesenchyme
Intermediate Mesoderm
Neural Plate/Tube
Notochord
Sclerotome
Somatic Mesoderm
 
19-24
stage 23
stage 24
stage 24
Foregut
Head Mesenchyme
Leg Mesenchyme
Liver
Lung
Mesonephros
Nephric Tubules
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Wing Mesenchyme
 
25-26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
Allantois
Cranial PNS
Ear/Otic Placode
Forebrain
Foregut
Heart
Hindgut
Leg Mesenchyme
Liver
Lung
Mesonephros
Myelencephalon
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
DORSAL MESENTERY

Entry 2

GEISHA IdLDB2.Anderson.2021Data SourceDirect Submission
Complete cDNA Template Probeshow
TCGGACTGTGATCAATGCACCATGGTCACTCAGCATGGAAAACCCATGTTTACCAAGGTATGCACAGAAGGACGTCTTA
TCTTGGAGTTTACTTTTGATGATCTTATGAGAATAAAAACATGGCACTTTACTATTAGACAATACAGAGAATTAGTCCC
ACGCAGCATTCTAGCCATGCATGCACAAGACCCTCAGGTGCTGGAGCAGCTGTCCAAAAACATCACTCGAATGGGTCTG
ACAAACTTCACCCTCAACTACCTCAGGTTGTGTGTAATACTGGAGCCAATGCAGGAACTGATGTCAAGACACAAAACTT
ACAATCTAAGTCCTCGAGACTGCTTGAAGACTTGCTTGTTTCAAAAATGGCAGAGAATGGTGGCCCCACCAGCAGAACC
CACAAGACAACCGACAACCAAACGGAGGAAAAGGAAAAACTCTACCAGCAGCACTTCGAACAGCAGTGCTGGGAACAAC
GCAAATAGTACCAACAGCAAGAAAAAGTCAGCTGCTGCAAACCTGAGTCTATCAAGTCAGGATGTGATGGTGGTAGGAG
AACCAACTCTGATGGGAGGCGAATTTGGAGACGAAGACGAAAGGCTTATCACTAGATTAGAGAATACACAGTATGATGC
AGCAAACGGCATGGATGATGAAAGAAGATTTCAACAATTCACCTGCACTGGGAAATAACAGCCCGTGGAACAGCAAACC
TCCTGCTAACCAGG
CommentsImages and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST341c13. Related paper: Anderson C, Khan MAF, Wong F, Solovieva T, Oliveira NMM, Baldock RA, Tickle C, Burt DW, Stern CD. A strategy to discover new organizers identifies a putative heart organizer. Nat Commun. 2016 7:12656. doi: 10.1038/ncomms12656. 
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 5
stage 6
Early Mesoderm
Epiblast
Extraembryonic Mesoderm
Primitive Streak
Unlabeled
HH5-
7-12
stage 7
stage 8
stage 9
stage 10
stage 11
stage 12
Anterior Neuropore
Blood Vessels
Extraembryonic Blood Vessels
Forebrain
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Primitive Streak
 
13-14
stage 13
stage 14
Blood Vessels
Extraembryonic Blood Vessels
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3673

Mouse

EmageMGI:894670
EurexpressMGI:894670
MGI GXDMGI:894670

Frog

Xenbase490278

Fruit Fly

BDGPFBgn0013764

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-136, ZDB-GENE-990415-137
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