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ATOH7
atonal bHLH transcription factor 7
Gene Summary
Expression
Other Species Expression
JBrowse
Gene
Official Symbol
ATOH7
Official Full Name
atonal bHLH transcription factor 7
CGNC ID
2882
also known as
ATH5, protein atonal homolog 7|Atonal Homolog 5|atonal homolog 7|atonal transcription factor homologue|cATH5|helix-loop-helix protein cATH-5|protein atonal homolog 5
gene type
protein-coding
Genomic Map
Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNA
NM_204668
Polypeptide
NP_989999
Gene Expression
In Situ Hybridization
GEISHA
Orthology
Entrez Gene
Ensembl Gene
Genetic Phenotypes
MOD
Fruit Fly
Human
220202
ENSG00000179774
MIM:609875
Mouse
53404
ENSMUSG00000036816
All phenotypic alleles (
7
):Targeted, other(
7
)
MGI:1355553
Xenopus
100493495
,
378577
,
378576
989021
Zebrafish
58216
ENSDARG00000069552
ZDB-GENE-000926-1
ZFIN:ZDB-GENE-000926-1
Gene Ontology
Molecular Function
DNA binding
,
protein dimerization activity
Biological Process
circadian rhythm
,
entrainment of circadian clock
,
neural retina development
,
neuron differentiation
,
more...
neuron fate commitment
,
regulation of transcription, DNA-templated
,
transcription, DNA-templated
Cellular Component
nucleus
Links to other databases
Entrez Gene
395388
Ensembl Gene
ENSGALG00000003931
KEGG
gga:395388
Entry 1
GEISHA Id
ATOH7.UApcr
Data Source
GEISHA ISH Analysis
Forward cDNA Template Primer
CCAGTCATTTGGATTCAGGAGTAG
Reverse cDNA Template Primer
AATTAACCCTCACTAAAGGTGTCTGTTGCCACTTTTTGTCC
cDNA Template Length
378
Forward cDNA Template Probe
show
AAACTTATTTTCGCAAATGGTGGAGCTCTCTGGATGAAGTGTTCCAGTGAAGGTTAATCCATTCTCTTTTATACTGTAT
CTCTCTGCTTCAGCAAGTATTCGTGTTAGAGCCATGATATAACTCAAAGCCATCTGAAGGGTCTCATATTTGGAGAGCT
TCTTATCTTGACCCCACTGTGGAACCACCTTCCTCAAACGATCAAAGGGTGTGTTCAGTCCTTGCATCCGTCTTCTCTC
CCTGGGGTTGGCAGCCAGTCTTCTCTTGGCAGCGCTCTCCATTCTTTCTGTGCTGCACTTCACAACACAGCCTGATCTT
CTTCTGGGCTGGATGTCTCATTCTACGCCTAATAATAAGAGGACTGGA
Comments
No expression detected at or before stage 6.
Stage
Image (click image to view full size)
Location (click to highlight)
Comments (click to highlight)
4-6
stage 6
Extraembryonic Mesoderm
Headfold
7-12
stage 8
stage 8
stage 8
stage 11
stage 11
Extraembryonic
Extraembryonic Mesoderm
Headfold
Heart
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
13-18
stage 17
Eye
Head Mesenchyme
19-24
stage 20
stage 21
Eye
25
stage 25
Eye
Head Mesenchyme
Trunk Mesenchyme
Entry 2
GEISHA Id
ATH5.Ma.2008
Data Source
Publication
Complete cDNA Template Probe
show
TCTAGATTTGCATTCACATAAATATGCATGTATACATTACACAGTGCGTATTAAAAAGGATAGTTTTCAGACTATTTGT
ACTGGCGTGTCTGTATCACAAGCTCTCCAAATACTTTAAAAATTATTAGATAAATCCATAGCTACATTTTAACTGTTTA
AACTTGTTCTGAATAATTTTCATAACGTTGCTGACATGCAAATGTATAATCTCAGTTTTCCTCGAGACACTGCTCTCTT
CTCAGTGGTCTGTACTTTAGTCCTACAAGATTCCTGATAATTTGAGTCTGTTTGCTTCAGTATTGTATAGTGAAGCACA
GTACTATTCTCTGCCATGCATCACCAAGCTAATTCTCCTCTGTTTTGTCGGAACAATTATTTTTTACTCCTAATTCTAC
CTACCAGAATTTTCAGATATTTTAAAGTGCAAATGCTACAATGCACAGTGAGAGTTATATATATTTTTTTCTCCTGAGT
TGCAACAGATTATCAATTGAAAGGATCTTTTGCTTAAGTGCCCAGAGTCTAGCGGGGCCAGCCAGACACGGCTCCAGAT
GGCAAGTTGTTAGGGCTGGACAGAATGGCTTTGGAAGACTTCTCAACAGATGAAGGCTGTAATGTTCGGGTTTTACTGT
TGCTTCTTTTTTTTTTTTTTTTTTTGTCCCCCTGTGGTTCCCAGGCTGGGAAGGTACTGGGATGGAAGCAGAGTGCCGC
CCGCCCACCTGCTACCACCTGTTTAGCCTTAGCAATTTCTATAAAGCCTCTTCGAGTCTGTAAGACACAATCATTGCTT
ACCGACGGCAGTCAAGAAGGAGAGATTTCTGTTACCAAGTTATGTCTTCAGATCGCAACAGTTCATCGTATCAAAACGT
CCTCCTAAACTGAATCAGAACTCCTTCCAAGTGAAATGTCCATTGGAATGGATGTCTTTTTAATCCATTAATATTCTTT
CTGGCTTAAAAGGACCATTTTCTTCACAAACTCATGTTTTGAGAATGGAGATTTCATTATTTTCTGTCTTTGAGTTTAC
AGAAATAAGAAGAATGAAAGCATAAGGCATTGAGAACTCTTTATTTTTTTCATTAAAAAATAAGCAATTTTCAGACACT
TCCAGAAAAGCCAGAAGAGTTTTTTATTTTTTTATTTTTTATGCGAAGATAAATATCTCATCAACAACATCTGGAAAAA
GATTCAAGAGGTACGCAGGCTACTTATAGGAGTGCTTTCTCTACAGCTGTTCAGACACTTCATTTTTAAAGTGTAATTT
TTTCTGTATGCGTGTGAAGCTGCATCTGCAATAGATATGAAAACCTGTCAATCCAGTCATTTGGATTCAGGAGTAGAAT
CAGACATCCAGTGCAGAAGTGGATCAGGCTGTGTTGTGAAGTGCAGCACAGAAAGAATGGAGAGCGCTGCCAAGAGAAG
ACTGGCTGCCAACGCCAGGGAGAGAAGACGGATGCAAGGACTGAACACAGCCTTTGATCGTTTGAGGAAGGTGGTTCCA
CAGTGGGGTCAAGATAAGAAGCTCTCCAAATATGAGACCCTTCAGATGGCTTTGAGTTATATCATGGCTCTAACACGAA
TACTTGCTGAAGCAGAGAGATACAGTACTGAAAGAGAATGGATTAACCTTCACTGTGAACACTTTCATCCAGAGAGCTA
CCACCATTATACGGGACAAAAAGTGGCAACAGACAGTGATCCTTATGCACAGCGAATATTCAGCTATCACCCTGAACAC
TTTCAAATAGCTAATTAGAACTTATTACGAGCTAAAAAA
Citation
Ma W, Yan RT, Mao W, Wang SZ. Neurogenin3 promotes early retinal neurogenesis. Mol Cell Neurosci. 2009 Feb;40(2):187-98. Epub 2008 Nov 6.
Copyright
Copyright © 2008 Elsevier Inc. All rights reserved.
Comments
As insufficient information is provided in the publication to verify the exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (acc #NM_204668).
Stage
Image (click image to view full size)
Location (click to highlight)
Comments (click to highlight)
13-18
stage 13
stage 13
stage 18
Retina
31-32
stage 32
stage 32
stage 32
stage 32
Retina
Entry 3
GEISHA Id
ATH5.Heine.2008
Data Source
Publication
Complete cDNA Template Probe
show
ATTCAAGAGGTACGCAGGCTACTTATAGGAGTGCTTTCTCTACAGCTGTTCAGACACTTCATTTTTAAAGTGTAATTTT
TTCTGTATGCGTGTGAAGCTGCATCTGCAATAGATATGAAAACCTGTCAATCCAGTCATTTGGATTCAGGAGTAGAATC
AGACATCCAGTGCAGAAGTGGATCAGGCTGTGTTGTGAAGTGCAGCACAGAAAGAATGGAGAGCGCTGCCAAGAGAAGA
CTGGCTGCCAACGCCAGGGAGAGAAGACGGATGCAAGGACTGAACACAGCCTTTGATCGTTTGAGGAAGGTGGTTCCAC
AGTGGGGTCAAGATAAGAAGCTCTCCAAATATGAGACCCTTCAGATGGCTTTGAGTTATATCATGGCTCTAACACGAAT
ACTTGCTGAAGCAGAGAGATACAGTACTGAAAGAGAATGGATTAACCTTCACTGTGAACACTTTCATCCAGAGAGCTAC
CACCATTATACGGGACAAAAAGTGGCAACAGACAGTGATCCTTATGCACAGCGAATATTCAGCTATCACCCTGAACACT
TTCAAATAGCTAATTAGAACTTATTACGAGCTAAAAATATGCAGCAGGCCAGATGTGTAATTTAATAATTAGCAAGAGT
TAATCTGCTTGAATAAGGTAATATTGGCATTACAAT
Citation
Heine P, Dohle E, Bumsted-O'Brien K, Engelkamp D, Schulte D. Evidence for an evolutionary conserved role of homothorax/Meis1/2 during vertebrate retina development. Development. 2008 Mar;135(5):805-11. doi: 10.1242/dev.012088. Epub 2008 Jan 23.
Copyright
Copyright held by the authors. Published by the Company of Biologists Ltd.
Stage
Image (click image to view full size)
Location (click to highlight)
Comments (click to highlight)
19
stage 19
stage 19
Retina
Mouse
Emage
MGI:1355553
MGI GXD
MGI:1355553
Frog
Xenbase
989021
Fruit Fly
BDGP
Zebra Finch
ZEBrA
Zebrafish
ZFIN
ZDB-GENE-000926-1
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