GEISHA - A Chicken Embryo Gene Expression Database
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SCOC
short coiled-coil protein

Gene
Official SymbolSCOC
Official Full Nameshort coiled-coil protein
CGNC ID7454
also known asBERT, short coiled-coil protein|short coiled-coil protein A
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_001114852
PolypeptideNP_001108324
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human60592ENSG00000153130
Mouse56367ENSMUSG00000063253All phenotypic alleles (1):Targeted, other(1) MGI:1927654
Xenopus100494794, 733176949186
Zebrafish100329577, 562638, 791709ENSDARG00000087333ZDB-GENE-061013-114, ZDB-GENE-041010-41ZFIN:ZDB-GENE-061013-114, ZFIN:ZDB-GENE-041010-41
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene422446
Ensembl Gene
KEGGgga:422446
GEISHA IdBERT.Papanayotous.2008Data SourcePublication
Complete cDNA Template Probeshow
GGGCACGAGGGCTGCGGCCGGGCCGGCGCTGCGCAGCCCGGGGGAGCGTCAGACCGTCGCTCAGGCCGGCTGAGTTCTA
AAGCAGAAAGAGCCCGTTCTACAATGATGAACGCTGACATGGACGCTGTTGAGGCTGAGAATCAGGTGGAATTAGAAGA
GAAAACACGGCTTATTAATCAAGTTTTGGAACTGCAGCACACACTTGAAGATCTCTCGGCACGAGTAGATGCTGTTAAG
GAAGAAAACTTGAAACTGAAATCAGAAAACCAAGTTCTTGGACAGTATATAGAAAATCTGATGTCAGCATCTAGCGTTT
TCCAAACCACTGACACAAAAAGCAAAAGGAAGTAGGGGTTGGCTCCCAAGCCATGTCATTGTATTGCTGCTGTCTTCTT
TGTTTTAAGTGGCATAGGCTACATAAGCTAAAATTATCTTAGTTTGTGGCTTTCCTGGATACCTGAAGATTATAAACTT
CAGCGATAAGCAGAATTAAGAACATTATCATGAACAGGAGATGCAAGTTTGTATATTAAGATTAAGCGATGTGCAAATA
TAGCGTAGAGACTTACTAGACTTTCGTATTTGTATTAAAAATGAGCATATCTTGTTAAGAATGGGAGTCAGTTTGTCAA
GTTAAACAAACATGTCTTGTTGGCTCTCTTAGAGGTCTTGGTGTTCTTGGCTAGAAAAATTATAGCTATAAAATGGTGT
TGAAAACTTACTTGGTAAAAAAAATATTCAGAGTCTAATTGCATCACCTTTTTCACGTCAAATGTTGATAGATTACTGT
GTAGTACCGTTCACGTCTCTGCAAAGCAGCTTTAAACAGAAGCCTATAAACCAGTTAGGAATTTTTGTAAAGCAGTAAC
AGTCTGACATTAGTTATAGGGTTTGCATGCGGGAAAGCAACAAAGTTTTTTTGGAAAGAGTTAAGTTACAGTGAACAAG
GATAAGTAACTTGCATCAGGGAAATATCAGATCGATGCAATAGTAATGTGTCTATCATTTATAAGAGCTACACTTCAAA
CTATTTTAACTTTCTTTCCTTAAAGAAAGGTCAGGTTCTGTGTTGTAACGTACTATCCAACCAAACTCACCCAAAACCT
GAGTAATAAGCTTGACAAACAGAAAGCCAGCAGCGTTCTTCCTCGTGCTCATTGTGATCAGGGTGGAGTAGTGAGAAGC
TGAAAACAAATCCTTCCTTGCCACCTTTTTACTTTTTTTCCTGAAGTGCCAAACTTGTCCTTGCTTCAGGCCTTACAGC
AGCTGTTTACCTGCCAAAGGGCCAGAGCTTGTGAAGTACCTCTAGAGACATAGCACAAAACCACCCAAGGCAGAAGAGG
CTGCTGTCTGTCAGATCTGGGCTGCACTGAGCAATGCCTGGTGTCAAGGTGTCCTGTTTCAGTTCACTGGATTGGCTTT
GTTAGAAGGAGCTCAGCCCAGATTCTGGGTGCCAGCACTTCCCCTAGAAGGGGTACATCTAGCATAATCAGTATTAGAG
AAGAGCAGAAGCTGAAATACAAACAACACTGTTAATGTTAGCTTAGTACTGTTAGGTCTGTTTCATCTCGCCATATAGC
AGCATGGACTTCTTATGGATGTCACCTAAAACTGAGATCTGTCTCTTTAGTAATGAAGTCATTTTACTTTAACAAAAAG
GGAACTGTTAGTTTAAGCTTCTCTTTCAGTTTTGCTGTGACAGATTGTGTATAATAAAGCTGGAGGAAGTGAATGAGTG
GATGTCATGGCAGAATAAATCCATCTCAAAACACAAGCTTCTTGGCAGCTAAGCACTGCTATTCCTCATCTGTAAGCTG
ATATCGTGAGCTCTCCCATTTCTCCCTATTTAAAATGACTGTAAAGCACTCACTGGAACGTCATCAGAGTTAAATGACT
AAAAACAAAGCACTAATATTTTGTGGCTTGAAGGCTGTTTACAAAGTCTGTGTCAAGAAATGAGATGACCAAAAGTTTC
ACCCCGCGAGGCACATGTGGCTCATGCTGTTTGTGTCATAGGGTCCTATAAGCAGCTAACGTTGCTATTAAACATCTCT
GGATTGCTTTGTGACATGGCTGTCTATCTCAAATGTTGAATACATGCAAAAATTTCTAGCCGGTGGAGTATATCACAGG
GCTATTGAAGACACACCTCACCAAGCATCTGACTTCTAAAAACCGTATTTGGTTACAGCCATCCTGGCTTTCAGGCCAC
GTCACTGCACATCTCCATCCGCACTGTGGGAGACACCCACAAACACCAAGTAGTAACACAGCATGCACTTACTAGACTT
GAGCAGTTCTGAGATCAAGTAATCTCACAATCATGGTTGTGTAATGTAAGATTGGGTAGTGATATTTTATCCATCATCA
GTCTGTATATAGTAGTCACTTAATCTATACACCATTTTTCATCCCACTACGGGGGGCTTTCATTTAACTTATGAGCATT
TTAAAGATGTTGTATTTCTGACTTTACACTAAATAAACACTTTTGATTTGTGTCAAAAAAAAAAAAAAAAAA
CitationPapanayotou C, Mey A, Birot AM, Saka Y, Boast S, Smith JC, Samarut J, Stern CD (2008). A mechanism regulating the onset of Sox2 expression in the embryonic neural plate. PLoS Biol. 2008 Jan;6(1):e2.
CopyrightCopyright: © 2008 Papanayotou et al.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_001114852).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 5
Ubiquitous
Stage 4+
7-12
stage 7
Ubiquitous
 
31-44
stage 44
Ubiquitous
 

Mouse

EmageMGI:1927654
MGI GXDMGI:1927654

Frog

Xenbase949186

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-061013-114, ZDB-GENE-041010-41
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