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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CELF1
CUGBP Elav-like family member 1

Gene

Official Symbol	CELF1
Official Full Name	CUGBP Elav-like family member 1
CGNC ID	48959
also known as	CUGBP1, CUGBP Elav-like family member 1\|CELF-1\|CUG triplet repeat, RNA binding protein 1\|CUG-BP- and ETR-3-like factor 1\|CUG-BP1\|RNA-binding protein BRUNOL-2\|bruno-like protein 2, CUG triplet repeat, RNA binding protein 1 , CUG-BP1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001012521
Polypeptide	NP_001012539

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	250811			FBgn0262475
Human	10658	ENSG00000149187		MIM:601074
Mouse	13046	ENSMUSG00000005506	All phenotypic alleles (3):Targeted, other(3)	MGI:1342295
Xenopus	549906, 399360, 379661			854035
Zebrafish	58137	ENSDARG00000005315	ZDB-GENE-000501-1	ZFIN:ZDB-GENE-000501-1

Gene Ontology

Molecular Function	RNA binding, nucleotide binding
Biological Process	RNA splicing, mRNA processing
Cellular Component	cytoplasm, nucleus

Links to other databases

Entrez Gene	373923
Ensembl Gene	ENSGALG00000008097
KEGG	gga:373923

Entry 1

GEISHA Id	CELF1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5'-AAATGGAGGACTTGGCAGTGG-3'
Reverse cDNA Template Primer	5'-AATTAACCCTCACTAAAGGGCTTCCCCTTCTTTTCTCTACCC-3'	cDNA Template Length	850
Complete cDNA Template Probe	show AAATGGAGGACTTGGCAGTGGTGGTCTTTCAAATGGGACAGGTAGCACAATGGAAGCTCTCACGCAGGCTTATTCTGGA ATCCAGCAATACGCTGCTGCTGCATTGCCCACACTCTATAACCAGAGTCTCTTAACACAGCAGAGTATTGGTGCAGCAG GAAGTCAAAAAGAAGGTCCAGAGGGAGCCAATCTGTTTATCTACCATCTCCCCCAGGAGTTTGGGGATCAAGATCTGCT GCAGATGTTTATGCCATTTGGAAATGTTGTCTCTGCCAAGGTTTTCATTGATAAGCAGACCAATCTAAGCAAGTGTTTT GGTTTTGTAAGTTATGACAATCCTGTCTCTGCACAGGCTGCCATTCAGTCAATGAACGGCTTTCAGATTGGCATGAAGC GTCTGAAAGTACAGCTCAAGCGCTCTAAGAATGACAGCAAGCCATACTGAGCGCCCCTCCCCTCCGGGACTGGAGTGAG GAGGATCTTTTGGTAAGTTGGAGAGGAGCGCACTTAGTGATTCGAAGCCCTAAGGCTGTGTTTTTACAGTCCTGGAAGC TGATCCATGCCGTTCTATCTGGCACGTCTTCCCCTGAAGACTCGGCTGCAGCCTCTACTGAGAATCCTGCTTCGAATGA AGGACAAGTTTGTGCTTTTGTTTCCAGTGTTTTACTTTGGAGTTTAGGTGCCATATCGCTGAGGTTTTTTTTTTTCCCT TATTTAAGTTTGCTGTGTTTGTAACCAGTGTGTGTTGAGAAGGACCAATGCCAGCTCCTTGGGGGTGGGGAGGTAAGGT CAAAGGGAGCCGCAGAAACTGAAACCACACTGCCTTGGGGTAGAGAAAAGAAGGGGAAGC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Unlabeled

7-12

stage 8

stage 9

stage 11

Anterior Intestinal Portal
Forebrain
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube

13-18

stage 16

stage 18

Widespread Expression

19-24

stage 21

Aorta
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Lung
Mesonephros
Midbrain
Neural Plate/Tube
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Ganglia and Nerves
Ventricles
Wing Mesenchyme

25-26

stage 26

Widespread Expression

Entry 2

GEISHA Id	CUG-BP1.Brimacombe.2007	Data Source	Publication
Complete cDNA Template Probe	show ATGAATGGTACACTGGATCACCCAGATCAACCTGATCTAGATGCTATCAAGATGTTTGTGGGTCAGGTCCCACGGAGCT GGTGTGAGAAAGATTTAAGAGAACTTTTTGAACAGTATGGTGCTGTCTATGAAATCAATGTCTTGCGAGACAGGAGCCA AAACCCTCCTCAAAGCAAAGGGTGCTGTTTTGTTACATTTTATACCCGTAAAGCTGCACTAGAAGCACAGAACGCTCTT CACAACATGAAGATTCTCCCAGGGATGCACCATCCTATCCAGATGAAACCAGCTGATAGTGAAAAGAATAATGTAGAAG ATAGGAAGTTGTTTATTGGAATGATATCAAAGAAGTGCAATGAAAATGATATCCGAGTGATGTTCTCACCCTTTGGGCA GATTGAAGAATGCAGGATATTACGGGGCCCAGATGGGCTGAGCCGAGGTTGTGCATTTGTGACTTTTACAACAAGAGCC ATGGCGCAAACAGCAATCAAAGCAATGCACCAAGCACAAACCATGGAGGGTTGCTCTTCTCCCATTGTGGTAAAATTTG CAGACACGCAGAAGGACAAAGAGCAGAAACGAATTGCTCAGCAACTCCAGCAACAAATGCAACAGATCAGTGCTGCCTC TGTATGGGGAAACCTGGCTGGTCTCAACACGCTTGGACCGCAATACTTAGCACTTTATTTGCAGCTCCTTCAGCAAACA GCAGCAGCCTCGTCTGGGAACCTGAACACGTTGAGCAGCCTCCACCCAATGGGAGGACTGAATGCGATGCAGTTACAGA ACCTAGCTGCGTTAGCAGCTGCAGCCAGTGCAGCTCAGAATACACCAAGTGGCACCGCTGCACTCACCTCCTCCAGCAG TCCCCTCAGTGTGCTCACCAGTTCACGTTCCTCACCTAGCTCCAGTAGCAGCTCTTCTGTTAATCCCATGGCTTCTCTT GGAGCATTGCAGACACTGGCAGGGGCTACAGCAGGCCTGAATGTTAGCTCTCTAGCAGGCATGGCAGCTTTAAATGGAG GACTTGGCAGTGGTGGTCTTTCAAATGGGACAGGTAGCACAATGGAAGCTCTCACGCAGGCTTATTCTGGAATCCAGCA ATACGCTGCTGCTGCATTGCCCACACTCTATAACCAGAGTCTCTTAACACAGCAGAGTATTGGTGCAGCAGGAAGTCAA AAAGAAGGTCCAGAGGGAGCCAATCTGTTTATCTACCATCTCCCCCAGGAGTTTGGGGATCAAGATCTGCTGCAGATGT TTATGCCATTTGGAAATGTTGTCTCTGCCAAGGTTTTCATTGATAAGCAGACCAATCTAAGCAAGTGTTTTGGTTTTGT AAGTTATGACAATCCTGTCTCTGCACAGGCTGCCATTCAGTCAATGAACGGCTTTCAGATTGGCATGAAGCGTCTGAAA GTACAGCTCAAGCGCTCTAAGAATGACAGCAAGCCATACTGA
Citation	Brimacombe KR, Ladd AN. Cloning and embryonic expression patterns of the chicken CELF family. Dev Dyn. 2007 Aug;236(8):2216-24.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Accession number given in the paper.