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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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DBX2
developing brain homeobox 2

Gene

Official Symbol	DBX2
Official Full Name	developing brain homeobox 2
CGNC ID	7312
also known as	CHoxE, homeobox protein DBX2\|developing brain homeobox protein 2\|homeobox protein CHox-E, Homeobox protein CHOX-E , CHOX E, DBX1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001276354
Polypeptide	NP_001263283

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	440097	ENSG00000185610
Mouse	223843			MGI:107445
Xenopus	100489622			481733
Zebrafish	30417		ZDB-GENE-000128-13	ZFIN:ZDB-GENE-000128-13

Gene Ontology

Molecular Function	sequence-specific DNA binding transcription factor activity, more...
Biological Process	multicellular organismal development
Cellular Component	nucleus

Links to other databases

Entrez Gene	417801
Ensembl Gene
KEGG	gga:417801

Entry 1

GEISHA Id	ChEST766g23	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GCCGCGGCGGAACAAATCAGCCCCTCGGGGGGTCCCTATCCGACCAGATGGGCTTTCCAAGTGCTTAACCCCTCGGCGG CGGACGGCGGCCGCCTGCCAGCACGGGCTCCGGCGGCGGACAGAGGCGGCGTCTTCCCGCCGGCGGCCACAGCTCTTTC CAAACACTTTTTTCTCCGAGCCCCGCCATTCTACTCAGCATGCTGCGGTGGGTCCTGTCAGCACCCTGCATCCCCCACT GCTTTTCCAAGAGAGGAAAGTGTCCTGCCTCTTCTGACCCAGGAGTCTAACTCCAAAGCCCGGAGAGGTATATTAAGAA GAGCTGTCTTTTCCGAAGACCAGAGGAAGGCTTTGGAGAAAATGTTTCAGAAGCAGAAGTATATCAGTAAAACAGACAG GAAGAAACTGGCGATTAACCTGGGCCTAAAGGAGTCTCAGGTGAAAATTTGGTTTCAGAATCGAAGGATGAAGTGGCGA AACTCCAAAGAAAAAGAAGTGCTTTCAAACAGGTGCCTCCAAGAAGGTCTTCAGGAAAACTACCTCTCACAGTCTGCCA TGAATTTTGCCTCCCCATGTCCCTCTGTGTGGGAGGTGTCTCAGGAGCAGACAAGTCCGAGGTGGAAGGAGAAGTCTCC AGGAAATTCTGAAAGACTGACTAGTACACAACCACCTCCAAGAGCAAACTCATCACAGAGCCCACTGTATTTGTATCCT GACCATGACACTGCAAATAAGGCAGTTACATCATCAGACTAAGAATGTAGGGCCAGTTTGTAAACTGAGTGGAAAGTGC ANGCTTCAGATAAGAAGTCTTCTAAGACTAACGATATTTGGACACTGTAAAGCTAACTAGTTATGCCCTCTAAAATGGC TAAAGTCTTACACCCATTAAATGGACACTAATGATTTAAAAATTATTTTCCATACCTCATCTTTTACGTCTCTTTCCAG TCTTGTAATGACCTTAAATGTGAAATAAAATTGAATGGAAATAAAACAAGTGAAAAACCTGAACCTGAAATTTTCCCCT AAATTAACATCTGCCATGGGTATAAATTTTCATTAAAAC
Comments	no specific expression detected stages 4-11.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 16

stage 17

Endocardium
Face Mesenchyme
Hindbrain
Spinal Cord

19-21

stage 21

Cranial Ganglia
Diencephalon
Endocardium
Hindbrain
Spinal Cord

Entry 2

GEISHA Id	DBX2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TCAGAATAGAAGGATGAAGTGGCG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGGAGGACAGATGGTGGAAACATACC	cDNA Template Length	815
Forward cDNA Template Probe	show AAAAGCTTCATTTGTTTAATACACACCTACTGGTGGTCATTTAATCAATCTCAAAAAGAACCCAAAGCAACTTATTATC TTCAGGGAAACAGGGTTATTCTCATCTCATGCATAAAATAAATTGCTTGGTCTGAATGCAGTGAGAGATAGAAGTGGTT TTCTATCAGTGTGTTTTAATGAAAATCTATACACAGTGCAGATGTTTAACTCAGAGCAAAACTTCAGCTTCATGCTCTT CACTTTGTTTTACTTACCATCAATTTCTATTTCACATTTAAGGTCATTACAAGACTGGAAAAGAGACGTGAAAAGACTG AGTATTGAAAAATATTTCTTAAATCATTAGTTGTCATTTTAATGGTGTTAGACTTTAGCAAATTTAGGAGGCATAACTA GTTAGCTTTACAGTGTCCAAATATTGTTAGTCTTAGAAGACCTCTCATCTGAAGCCTGCACTCTCCACTCAATTTACAA ACTGGCCCTACATTCTTAGTCTGATGATGTAACTGCCTTATTTGCAGTGTCATGGTCAGGATACAAATACAGTGGGCTC TGTGATGAGTTTGCTCTTGGAGGTGGTTGTGTACTAGTCAGTCTTTCAGAATTTCCTGGAGACTTCTCCTTCCACCTTG GACTTGTCTGCTCCTGAGACACCTCCCACACAGAGGGACATGGGGAGGCAAAATTCATGGCAGACTGTGAGAGGTAGTT TTCCTGAAGACCTTCTTGGAGGCACCTGTTTGAAAGCACTTCTTTTTCTTTGGAGTTTCGCCACTTCATCCTCCNAATT CTGAAA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 10

stage 11

Forebrain
Hindbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Unlabeled

13-18

stage 18

Hindbrain
Lung
Neural Plate/Tube
Pharyngeal Arches and Clefts

19-24

stage 20

stage 22

Cranial Ganglia
Cranial PNS
Foregut
Hindbrain
Lung
Mesencephalon
Midbrain
Myelencephalon
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Spinal Ganglia and Nerves
Ventricles

25-26

stage 26

Cranial Ganglia
Cranial PNS
Eye
Foregut
Head Mesenchyme
Heart
Hindbrain
Leg
Lung
Midbrain
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Wing

Entry 3

GEISHA Id	DBX2.Davey.2006	Data Source	Publication
Complete cDNA Template Probe	show GCGGCGTGCCTCCCCCGAGCGCTCCGCTCCCCGCAGCCCTCCCGGCCCCACAGCCCGGCGCCCCGTCCCAGCCCAGTGA GGGGCCGCGGCGGCCGGGCCGGGCCGGGCCGGGCCGGGCGGCCCTCGCTATGCTGCCCAGCGCGCTGTACTGGGACCTG GTGGGCTCCTCGGCGCTCCTCAACCTGCCGGCGGCGCCGGGCTTCGGCAGCCTGGGCAAAAGTTTCCTCATCGAGAACT TGCTACGGGCCGGCGCGCCGCAGAGCCCTGCCCAGCTCCGTCCCCTCCCCGCCAGCCCCGTCCCCCTCAAGCTGTGCCC CGCGGCGGAACAAATCAGCCCCTCGGGGGGTCCCTATCCGACCAGATGGGCTTTCCAAGTGCTTAACCCCTCGGCGGCG GACGGCGGCCGCCTGCCAGCACGGGCTCCGGCGGCGGACAGAGGCGGCGTCTTCCCGCCGGCGGCCACAGCTCTTTCCA AACACTTTTTTCTCCGAGCCCCGCCATTCTACTCAGCATGCTGCGGTGGGTCCTGTCAGCACCCTGCATCCCCCACTGC TTTTCCAAGAGAGGAAAGTGTCCTGCCTCTTCTGACCCAGGAGTCTAACTCCAAAGCCCGGAGAGGTATATTAAGAAGA GCTGTCTTTTCCGAAGACCAGAGGAAGGCTTTGGAGAAAATGTTTCAGAAGCAGAAGTATATCAGTAAAACAGACAGGA AGAAACTGGCGATTAACCTGGGCCTAAAGGAGTCTCAGGTGAAAATTTGGTTTCAGAATAGAAGGATGAAGTGGCGAAA CTCCAAAGAAAAAGAAGTGCTTTCAAACAGGTGCCTCCAAGAAGGTCTTCAGGAAAACTACCTCTCACAGTCTGCCATG AATTTTGCCTCCCCATGTCCCTCTGTGTGGGAGGTGTCTCAGGAGCAGACAAGTCCAAGGTGGAAGAAGTCTCCAGGAA ATTCTGAAAGACTGACTAGTACACAACCACCTCCAAGAGCAAACTCATCACAGAGCCCACTGTATTTGTATCCTGACCA TGACACTGCAAATAAGGCAGTTACATCATCAGACTAAGAATGTAGGGCCAGTTTGTAAATTGAGTGGAGAGTGCAGGCT TCAGATGAGAGGTCTTCTAAGACTAACAATATTTGGACACTGTAAAGCTAACTAGTTATGCCTCCTAAATTTGCTAAAG TCTAACACCATTAAAATGACAACTAATGATTTAAGAAATATTTTTCAATACTCAGTCTTTTCACGTCTCTTTTCCAGTC TTGTAATGACCTTAAATGTGAAATAGAAATTGATGGTAAGTAAAACAAAGTGAAGAGCATGAAGCTGAAGTTTTGCTCT GAGTTAAACATCTGCACTGTGTATAGATTTTCATTAAAACACACTGATAGAAAACCACTTCTATCTCTCACTGCATTCA GACCAAGCAATTTATTTTATGCATGAGATGAGAATAACCCTGTTTCCCTGAAGATAATAAGTTGCTTTGGGTTCTTTTT GAGATTGATTAAATGACACAGTAGGTGTGTATTAAACAAATGTAAGCATTTTTGGTATGTTTCCACCATCTGTCCTCAC CTGTATCAGTATCCAGCTAGTTGTAAATAGCACAGTCGCACATCAGCCAATAACCATAGTAAAGTATGCAATAAAAAGA CAGACAGCCAATAAAATGGACTGTGTTTAAGCCACTTTCATTTGGATGCATACTGGGAAATACAATTCACTAACTCCTT TATTTTTTTCCTGTGGGTGAAACTGAAACCACTCTCAACTCAATTTCAGTGGATTTTGTCAGATTATTAGTGCAGTCTC TTATAATCTGTGCTGTATTTCAAAATTATGGTGGCTATATGCAGAATTATTGCCCAAATGGATTAGGCTGGAGCGCTAA AATTGGAAACTCTACCACTGCAGCCTCACTTAGAGAAGTACTGAAGGAGAAGGCATGCTGTAGTTGTCTGATTGCTGAC TTATTCCTCATTAAACTGGTACCCATTAGTACATGTCAGCATACATCTGTATCAAAGGCAGGACAGCATTCTGTGTAAG GCAAGGAGCTTGAAATAGTAGTATTAAAATTACTCGGCTTGAAATGTTTTGCTTGCTTCATCCAGTTGAAGGAAATCAC TTTGGAAGGTAATGATCAACTTTTCTTCATTTGAAAGGCCTTGGAGCTCAAAATGGGAGCAGAAGGAGCAGCTTTTTGT TGTTGTTTGTTTGTTTATTTTAACCATACATTTGTGGTTGCATCTGTTGAGAATAAAAATGAAAAGTATTTTATCCTAC AGGCAAAA
Citation	Davey MG, Paton IR, Yin Y, Schmidt M, Bangs FK, Morrice DR, Smith TG, Buxton P, Stamataki D, Tanaka M, Münsterberg AE, Briscoe J, Tickle C, Burt DW. The chicken talpid3 gene encodesa novel protein essentialfor Hedgehog signaling. Genes Dev. 2006 May 15; 20(10): 13651377.
Copyright	Copyright © 2006, Cold Spring Harbor Laboratory Press
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_416044.3 ).