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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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GJA4
gap junction protein alpha 4

Gene

Official Symbol	GJA4
Official Full Name	gap junction protein alpha 4
CGNC ID	1818
also known as	Cx39, ggCx39, gap junction alpha-4 protein\|connexin 37\|connexin 39
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_206984
Polypeptide	NP_996867

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2701	ENSG00000187513		MIM:121012
Mouse	14612	ENSMUSG00000050234	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:95715
Xenopus	780366, 444216, 100335149			977955
Zebrafish	557275	ENSDARG00000070357	ZDB-GENE-050616-6	ZFIN:ZDB-GENE-050616-6

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	404529
Ensembl Gene	ENSGALG00000002532
KEGG	gga:404529

Entry 1

GEISHA Id	GJA4.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-TGGTGATGGGCCTCATTTCC-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGAAAGCCCCCACATGGATCAG-3’	cDNA Template Length	802
Complete cDNA Template Probe	show TGGTGATGGGCCTCATTTCCTTAATCCTCAACCTCCTGGAGCTCTTCCACCTCTGCTGCAAGAGCCTGCTCAGCAGCAT CAAGAAGGTGCCGGTGCCGGTTGGCCCGAGCCAGAGTGCCTTTGCTGATGACATGGGCTCGGGTCCCTACCCAGCCAAG CATTACCCCTTCCTGCCCATGGCTGAGAGCCACACACCGCCCTACCAGGCTTACAACAAGCTCTCCAGCGAGCAGAACT GGGCCAACTTCCGCAACGAGGAGAACCTGGCACTGGGCAGCGGCACCAGGCCCCTCTCGGACCCCTACGCCCCCAGGGC TCCAGATGCCCCCATCCCTGAGGAGAAGCAGTGCAGCCGGCCCAGCAGCTCAGCATCCAAGAAGCAGTATGTTTAGGGC CTGGGCTGGGGACTGTCCCTTGTGCCCGCTCTGAGGATGTGGTGCCTGCTGTTGGGACCTGATGCTCACAAACTCACCG GCCCCTGAGCACAACCTCTGCTCTCTGCTGTTTTCCCCATAGGCCCTGCAAGGAAGGAAACTACATGTAAACTTCCCCG GGCCGTGCTGGGATGGCATGTGCAGTGCAGAGGGACTTGGCATCAGTGTAGGAAAGGGAGCAAATCCCCAGGGCTGGGA AGGGGCTGTGGTGAGGGGTCCTGCCCATGCAGCTGGCCCCTGGGACGTGATGAAGTCCCCCTACCAGTGTGGGAGCACT GTGGAGCCATGAGAAGCCTCTTGTCCTGGCCGTGGGCTGTGTCCTCTTCCTGTGACCCAGCAGACAGCTGGCACTGATC CATGTGGGGGCTTT

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Unlabeled

13-18

stage 15

stage 16

Aorta
Blood Vessels
Outflow Tract

19-24

stage 24

Aorta
Blood Vessels
Foregut
Head Mesenchyme
Heart
Leg Mesenchyme
Lung
Neural Plate/Tube
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Ventricles
Wing Mesenchyme

25-26

stage 26

Aorta
Blood Vessels
Foregut
Head Mesenchyme
Heart
Liver
Mesonephros
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Ventricles

Entry 2

GEISHA Id	cCx39.Nicotra.2004	Data Source	Publication
Complete cDNA Template Probe	show CGCGCTCCTCCTCCGGCTCCCCCGGGCCCCGCACGGCCCCCGCAGCCCGGCCCGGCCCGGCCGCTCACACCCTGCACGG CCCGAGGCAGAAGGGACGTGCCCGGCGCTGCCAGGCGGGCGGTGAGTGAGCTCCTAGAAGATGGGCGACTGGGGATTCC TGGAGAAACTGCTGGACCAAGTCCAGGAGCACTCCACCGTGATCGGGAAGATCTGGCTCACCGTCCTCTTCATCTTCCG TATCCTCATCCTGGGCTTGGCTGGTGAGTCCGTGTGGGGGGACGAGCAGTCGGACTTCGTGTGCAACACCAAGCAGCCG GGCTGCACCAATGTCTGCTATGACAAAGCCTTCCCCATCTCCCACATCCGCTACTGGGTGCTGCAGTTCCTCTTTGTCA GCACCCCGACCCTCATTTACCTGGGCCACGTTGTCTATCTCTCGCGGAAAGAGGAGAAGCTGAAACAGCAGGAGAATGA GCTCCGGGCTATTCACAGCAAGGACCCAAAGATTGAGCAAGCATTGGCAGCTGTAGAAAAGAAGATGTCCAAGATCTAC GTGACAGAAGATGGGCGGCTCAAGATCCGAGGGGCACTGATGTGGACGTACGTCATCAGTGTGATCTGCAAGAGCATCT TTGAGGCAGGCTTCCTCGTTGGCCAGTGGTACCTGTATGGCTTCTCCATGGTGCCCCGCTACGTGTGCAGGAGGGACCC CTGCCCGCACCAGGTGGACTGCTTCATCTCCCGCCCCACCGAGAAGACCATCTTCATCATCTTCATGATGGTGATGGGC CTCATTTCCTTAATCCTCAACCTCCTGGAGCTCTTCCACCTCTGCTGCAAGAGCCTGCTCAGCAGCATCAAGAAGGTGC CGGTGCCGGTTGGCCCGAGCCAGAGTGCCTTTGCTGATGACATGGGCTCGGGTCCCTACCCAGCCAAGCATTACCCCTT CCTGCCCATGGCTGAGAGCCACACACCGCCCTACCAGGCTTACAACAAGCTCTCCAGCGAGCAGAACTGGGCCAACTTC CGCAACGAGGAGAACCTGGCACTGGGCAGCGGCACCAGGCCCCTCTCGGACCCCTACGCCCCCAGGGCTCCAGATGCCC CCATCCCTGAGGAGAAGCAGTGCAGCCGGCCCAGCAGCTCAGCATCCAAGAAGCAGTATGTTTAGGGCCTGGGCTGGGG ACTGTCCCTTGTGCCCGCTCTGAGGATGTGGTGCCTGCTGTTGGGACCTGATGCTCACAAACTCACCGGCCCCTGAGCA CAACCTCTGCTCTCTGCTGTTTTCCCCATAGGCCCTGCAAGGAAGGAAACTACATGTAAACTTCCCCGGGCCGTGCTGG GATGGCATGTGCAGTGCAGAGGGACTTGGCATCAGTGTAGGAAAGGGAGCAAATCCCCAGGGCTGGGAAGGGGCTGTGG TGAGGGGTCCTGCCCATGCAGCTGGCCCCTGGGACGTGATGAAGTCCCCCTACCAGTGTGGGAGCACTGTGGAGCCATG AGAAGCCTCTTGTCCTGGCCGTGGGCTGTGTCCTCTTCCTGTGACCCAGCAGACAGCTGGCACTGATCCATGTGGGGGC TTTGCTGCCAGAGCTGCTCCTGTCCCTGTGGACCACAGTGAGTTAACCCCGTACTGGGACATTTGTCACACCGCACGTC CCCATTGCCCTGAGTGCCCCAGGACCCCCCCTGTGTCCTGTCCCTGGACCCTTTCCCACGTGATGTCTCTAAGTTATTT TTAACATGCCGACCCAAGCACGGAGCTTTCTGCCTTAAAGGTGCCGTTATGCAGGGGACCAGGGAGCCGTGTCCATCCC AGGCCACCAGCCTTTGAGCCCAGTGGTTTGGGGGGAGGAATTAGCCAAGCAGTAATCAGTTTTGAGGGGTCGTTGTTTT TAATACTTTGCACTAGTCATCTCCTGCTGTGGGCTGCAGTGCTGCTGATGGGCCAGAGGAATGGACCACTGCCCACCAA AGCTGTGAGATGGAAGGGGCTGCGGGAACCTGCTCCATCTGCTGCTCATGGACCACGTGCAGCCACAGAGCATGAGCGC AGGGTGTGGGCTTTGCTCCTCTGTTCTGCTTCCTTTTCCTCCCTGCCAGACTGAGCGCTGTATTGCATTGAATAAAGTT GGATGAATT
Citation	Nicotra A, Cicirata F, Martinez S. Analysis of cCx39 expression pattern during chick development. Brain Res Dev Brain Res. 2004 Feb 20;148(2):179-83.
Copyright	Copyright © 2004 Elsevier B.V.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_206984). cCx39 is also known as GJA4 in NCBI.