GEISHA - A Chicken Embryo Gene Expression Database
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HOXB3
homeobox B3

Gene
Official SymbolHOXB3
Official Full Namehomeobox B3
CGNC ID49352
also known as2.7, CHOX, HOXB-3, homeobox protein Hox-B3|chox-2.7|homeo box B3|homeobox protein Hox-2.7
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_204743
PolypeptideNP_990074
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3213MIM:142966
Mouse15410All phenotypic alleles (1):Targeted, knock-out(1) MGI:96184
Xenopus548725, 373719482575
Zebrafish30339ENSDARG00000029263ZDB-GENE-990415-104ZFIN:ZDB-GENE-990415-104
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395502
Ensembl Gene
KEGGgga:395502

Entry 1

GEISHA IdHOXB3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAATGGGTTTGGCTACGAGGGTC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGTGGGGCTTATTGAGGGAAGGTGcDNA Template Length743
Complete cDNA Template Probeshow
GAATGGGAGCTGTATGAGGCCGAGTTTGCCCCAGGAGCACCATCCGCCTCCGACTGTCTCACCACCCCCAAACCCCACC
ACCAACAGCACCAGTAGCAACAGCATACCGTCAGGGAGCGCTAAAGTGCCCCGAGTAAAGCCAACCTCAGTGCAAACGC
CCAGTCTCACCAAGCAGATTTTCCCCTGGATGAAAGAATCGAGGCAAAACTCGAAACAGAAAAGCAGCTCCCCTAGCAC
AGAAACCTGCAGCGGCGAGAAAACGCCTCCAGGCTCCTCGGCCTCCAAGAGAGCCCGCACAGCTTACACCAGCGCGCAG
CTGGTGGAGCTGGAGAAGGAATTCCACTTCAACCGCTACCTGTGCCGGCCCCGGCGCGTGGAGATGGCCAACCTGCTGA
ACCTCAGCGAGAGGCAGATCAAGATCTGGTTCCAGAACAGGAGGATGAAGTATAAGAAAGATCAGAAGTCAAAAGGGAT
GGGCTCTTCCTCTGGAGGGCCTTCCCCCACCGGCAGCCCCCCCCAACCCATGCAATCCTCCGCCGGGTTTATGAACGCC
TTGCACACCATGAGCAGTAACTATGATGCCCCCTCCCCACCTTCCCTCAATAAGCCCCACCAAAATGCCTACGCCCATG
TAACTAACTACCAAAACCCCATCAAAGGTGCCCTCCAACAGAAGTACACCAACACGGCCCCCGAGTACGACCCCCA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Primitive Streak
 
7-12
stage 8
stage 9
stage 12
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
 
13-18
stage 18
Neural Plate/Tube
Somites
Spinal Cord
 
19-24
stage 22
stage 22
stage 22
stage 23
Ectoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Somites
Spinal Cord
 
25-26
stage 26
stage 26
stage 26
stage 26
Ectoderm
Neural Plate/Tube
Somites
Spinal Cord
Tail
 

Entry 2

GEISHA IdHOXB3.Alev.2010Data SourcePublication
Complete cDNA Template Probeshow
ATGCAGAAGACAACGTACTACGAAAGCTCCACGCTCTTTGGGGGCTATTCCTATGGGAGCACCAATGGGTTTGGCTACG
AGGGTCCCCAGCAGCCCTTCCAACCGGGTTCCCACGTGGAGAACGACTTCCAGAGGTCCGCCTGCTCCCTCCAGTCTCT
CGGCAACACAACTCAGCACGCAAAAAGTAAAGACCTGAATGGGAGCTGTATGAGGCCGAGTTTGCCCCAGGAGCACCAT
CCGCCTCCGACTGTCTCACCACCCCCAAACCCCACCACCAACAGCACCAGTAGCAACAGCATACCGTCAGGGAGCGCTA
AAGTGCCCCGAGTAAAGCCAACCTCAGTGCAAACGCCCAGTCTCACCAAGCAGATTTTCCCCTGGATGAAAGAATCGAG
GCAAAACTCGA
CitationAlev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
CopyrightPublished by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
CommentsFORWARD PRIMER TGGAGATGCAGAAGACAACG REVERSE PRIMER TCGAGTTTTGCCTCGATTCT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
Early Mesoderm
Primitive Streak
 

Entry 3

GEISHA IdHOXB3.Richardson.2011Data SourcePublication
Complete cDNA Template Probeshow
ATGCAGAAGACAACGTACTACGAAAGCTCCACGCTCTTTGGGGGCTATTCCTATGGGAGCACCAATGGGTTTGGCTACG
AGGGTCCCCAGCAGCCCTTCCAACCGGGTTCCCACGTGGAGAACGACTTCCAGAGGTCCGCCTGCTCCCTCCAGTCTCT
CGGCAACACAACTCAGCACGCAAAAAGTAAAGACCTGAATGGGAGCTGTATGAGGCCGAGTTTGCCCCAGGAGCACCAT
CCGCCTCCGACTGTCTCACCACCCCCAAACCCCACCACCAACAGCACCAGTAGCAACAGCATACCGTCAGGGAGCGCTA
AAGTGCCCCGAGTAAAGCCAACCTCAGTGCAAACGCCCAGTCTCACCAAGCAGATTTTCCCCTGGATGAAAGAATCGAG
GCAAAACTCGAAACAGAAAAGCAGCTCCCCTAGCACAGAAACCTGCAGCGGCGAGAAAACGCCTCCAGGCTCCTCGGCC
TCCAAGAGAGCCCGCACAGCTTACACCAGCGCGCAGCTGGTGGAGCTGGAGAAGGAATTCCACTTCAACCGCTACCTGT
GCCGGCCCCGGCGCGTGGAGATGGCCAACCTGCTGAACCTCAGCGAGAGGCAGATCAAGATCTGGTTCCAGAACAGGAG
GATGAAGTATAAGAAAGATCAGAAGTCAAAAGGGATGGGCTCTTCCTCTGGAGGGCCTTCCCCCACCGGCAGCCCCCCC
CAACCCATGCAATCCTCCGCCGGGTTTATGAACGCCTTGCACACCATGAGCAGTAACTATGATGCCCCCTCCCCACCTT
CCCTCAATAAGCCCCACCAAAATGCCTACGCCCATGTAACTAACTACCAAAACCCCATCAAAGGTGCCCTCCAACAGAA
GTACACCAACACGGCCCCCGAGTACGACCCCCATGTATTACAAGGGAACGGGGTGGCCTACGGGACTCCCAGCATGCAG
GGAAGTCCCGTCTACGTTGGAGGTAACTATGTGGACTCCCTGCCCACCTCTGGCCCATCCCTTTACGGCCTCAATCACC
TCCCACATCACCAGGCGGCCAACATGGACTACAGTGGGCCCCCGCAGATGCCTCCAAGCCAACACCACGGACCATGCGA
GCCCCACCCCACCTACACAGACCTTTGGCCTGCGCAGCCGACGCATCTTCTCGGAGGGCAGAATCCAGGAGGGCCCAAG
CTGACCCACCTGTGA
CitationRichardson J, Shono T, Okabe M and Graham A. The presence of an embryonic opercular flap in amniotes. PLoS One. 2012; 7(9): e44903. Published online 2012 September 11.
CopyrightPLoS One. 2012; 7(9): e44903. Published online 2012 September 11.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204743.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
stage 26
Pharynx
 

Entry 4

GEISHA IdHoxb‐3.Gaunt.1996Data SourcePublication
Complete cDNA Template Probeshow
GAATTCCACTTCAACCGCTACCTGTGCCGGCCCCGGCGCGTGGAGATGGCCAACCTGCTGAACCTCAGCGAGAGGCAGA
TCAAGATCTGGTTCCAGAACAGGAGGATGAAGTATAAGAAAGATGAGAAGTCAAAAGGGATGGGCTCTTCCTCTGGAGG
GCCTTCCCCCACCGGCAGCCCCCCCCAACCCATGCAATCCTCCGCCGGGTTTATGAACGCCTTGCACACCATGAGCAGT
AACTATGATGCCCCCTCCCCACCTTCCTTCAATAAGCCCCACCAAAATGCCTACGCCATGTCAACTAACTACCAAAACC
CCATCAAAGGCTGCCCCTCCCAACAGAAGTACACCAACACGGCCCCCGAGTACGACCCCCATGTATTACAAGGGAACGG
GGTGGCCTACGGGACTCCCAGCATGCAGGGAAGTCCCGTCTACGTTGGAGGTAACTATGTGGACTCCCTGCCCACCTCT
GGCCCATCCCTTTACGGCCTCAATCACCTCCCACATCACCAGGCGGCCAACATGGACTACAGTGGGCCCCCGCAGATGC
CTCCAAGCCAACACCACGGACCATGCGAGCCCCACCCCACCTACACAGACCTTTCCTCGCACCACGCATCTTCTCAGGG
CAGAATCCAGGAGGCCCCCAAGCTGACCCACCTGTGATCGGGAGCAGGGATGGGACTCAAGTGAACTGGATGGCAACCA
ACACATGACTTGGATGGGGCACGGGGCAGGACGGCCTTCAGAAACATTTGTGTTGAGCTGTTTTCTTCCTTTCTTCTCT
TAGGCAAGTTCTACCAAGCTGTTGAGCTTGCCAGTGTTATTTCTGGGTTCTGTTTGGCACAGTTTCCAAGGACTTCAGT
ATTTAATGTCAAAAGCATCTCTCTCTCTGAAAAGATGTACCTCCTGTGGGT
CitationGaunt SJ, Strachan L. Temporal colinearity in expression of anterior Hox genes in developing chick embryos. Dev Dyn. 1996 Nov;207(3):270-80.
CopyrightCopyright © 1996 Wiley‐Liss, Inc.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Gaunt et al. 1996.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 8
stage 8
stage 9
stage 9
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
 
31-44
stage 44
stage 44
  

Entry 5

GEISHA IdHoxb3.Bel-Vialar.2002Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
ATGCAGAAGACAACGTACTACGAAAGCTCCACGCTCTTTGGGGGCTATTCCTATGGGAGCACCAATGGGTTTGGCTACG
AGGGTCCCCAGCAGCCCTTCCAACCGGGTTCCCACGTGGAGAACGACTTCCAGAGGTCCGCCTGCTCCCTCCAGTCTCT
CGGCAACACAACTCAGCACGCAAAAAGTAAAGACCTGAATGGGAGCTGTATGAGGCCGAGTTTGCCCCAGGAGCACCAT
CCGCCTCCGACTGTCTCACCACCCCCAAACCCCACCACCAACAGCACCAGTAGCAACAGCAATAACCAGTCAGGGAGCA
GCAAAAGTGCCCCGAGTAAAGCCAACCTCAGTGCAAACGCCAGTCTCACCAAGCAGATTTTCCCCTGGATGAAAGAATC
GAGGCAAAACTCGAAACAGAAAAGCAGCTCCCCTAGCACAGAAACCTGCAGCGGCGAGAAAAGCCCTCCAGGCTCCTCG
GCCTCCAAGAGAGCCCGCACAGCTTACACCAGCGCGCAGCTGGTGGAGCTGGAGAAGGAATTCCACTTCAACCGCTACC
TGTGCCGGCCCCGGCGCGTGGAGATGGCCAACCTGCTGAACCTCAGCGAGAGGCAGATCAAGATCTGGTTCCAGAACAG
GAGGATGAAGTATAAGAAAGATCAGAAGTCAAAAGGGATGGGCTCTTCCTCTGGAGGGCCTTCCCCCACCGGCAGCCCC
CCCCAACCCATGCAATCCTCCGCCGGGTTTATGAACGCCTTGCACACCATGAGCAGTAACTATGATGCCCCCTCCCCAC
CTTCCTTCAATAAGCCCCACCAAAATGCCTACGCCATGTCAACTAACTACCAAAACCCCATCAAAGGCTGCCCCTCCCA
ACAGAAGTACACCAACACGGCCCCCGAGTACGACCCCCATGTATTACAAGGGAACGGGGTGGCCTACGGGACTCCCAGC
ATGCAGGGAAGTCCCGTCTACGTTGGAGGTAACTATGTGGACTCCCTGCCCACCTCTGGCCCATCCCTTTACGGCCTCA
ATCACCTCCCACATCACCAGGCGGCCAACATGGACTACAGTGGGCCCCCGCAGATGCCTCCAAGCCAACACCACGGACC
ATGCGAGCCCCACCCCACCTACACAGACCTTTCCTCGCACCACGCATCTTCTCAGGGCAGAATCCAGGAGGCCCCCAAG
CTGACCCACCTGTGATCGGGAGCAGGGATGGGCTCAAGTGAACTGGATGGCAACCAACACATGACTTGGATGGGGCACG
GGGCAGGACGGCCTTCAGAAACATTTGTGTTGAGCTGTTTTCTTCCTTTCTTCTCTTAGGCAAGTTCTACCAAGCTGTT
GAGCTTGCCAGTGTTATTTCTGGGTTCTGTTTGGCACAGTTTCCAAGGACTTCAGTATTTAATGTCAAAAGCATCTCTC
TCTCTGAAAAGATGTACCTCCTGTGGGT
CitationSophie Bel-Vialar, Nobue Itasaki, Robb Krumlauf. Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development 2002 Nov;129(22):5103-15.
CopyrightCopyright © The Company of Biologists Limited 2002.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_204743.2).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 15
Somites
Spinal Cord
 

Mouse

EmageMGI:96184
MGI GXDMGI:96184

Frog

Xenbase482575

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-104
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