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HOXD11 homeobox D11 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol HOXD11 Official Full Name homeobox D11 CGNC ID 7045 also known as GHOX4.6, homeobox protein Hox-D11|Hox D11|chox-4.6|chox-4E|ghox-4.6|homeo box D11|homeobox protein Hox-4.6|homeobox protein Hox-4E|homeodomain-containing protein gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Entrez Gene Ensembl Gene Genetic Phenotypes MOD Fruit Fly Human Mouse Xenopus Zebrafish
Gene Ontology Links to other databases
Entry 1 GEISHA Id HOXD11.UApcr Data Source GEISHA ISH Analysis Forward cDNA Template Primer TGTCGCAATCGTCTTCCTGTC Reverse cDNA Template Primer AATTAACCCTCACTAAAGGTCAGTGAGGTTGAGCATTCTGG cDNA Template Length 644 Forward cDNA Template Probe show AAAATTGCATTGATTGGCACTGCAGCCTTTTCCTTGGTTTGGAACCGTTGGAGAAAACTCCCGTTCCCGTTTCTTTATC TGATATTTTGGTATAGGGACACCCTCTTTTTTCTCCATCGCTGAGGAACTGATGTGTTGTTGTTCTTCGCTGCAACCTC CTCGGGAGGAGGAGAAGCGGCGCCCCCCGCCGTTGTCTTTTTCTTCTCCTGGGCAGGAGGCGTCTTGCTGGAGGTGCTG TGGTGGGGCTTCTACTCCCTGTTGGCGGCGCCCCCCTCCCCCTAGTACTGCTGGTAGTACGGGGGCGCGGGGGGCTCCT CGTAATAGTTGAAGAACTCCTGCCGGAAGATGGTCCTCCTCCCCCCCCAGCCCAAAATGTTGGCGGCGGGGGGGGCCCC CTCGTGGTGGCCCCACACGGGCTTCTTTTTTAATATTTTTTTCCTCCTGCTGTTCGGGGGGTGAAAAAAATCTTTGTGC CTCTCCTCCTCTGATTAATAAGAAGGGGCCCTACCCCCCCTGTGCTGGCATTTGCCCCCCTCTTATTCTTTTTTGCCTG ATGCCTCCTCCCCCAGATGGTGGACATGGAGTTTATTAAAAAAATTAAGAATCCTTTTTTGTGGGGAATAATGTTGCAA CAAAA
Comments No specific expression observed at or before stage 7.
Entry 2 GEISHA Id HOXD-11.Reid.2002 Data Source Publication Complete cDNA Template Probe show AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
Citation Reid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar Copyright Copyright © 2007 UBC Press Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204620).
Entry 3 GEISHA Id HOXD11.Gamer.2001 Data Source Publication Complete cDNA Template Probe show AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
Citation Gamer LW, Cox KA, Small C, Rosen V (2001). Gdf11 is a negative regulator of chondrogenesis and myogenesis in the developing chick limb. Dev Biol. 2001 Jan 15;229(2):407-20. Copyright Copyright © 2000 Academic Press. All rights reserved.
Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204620).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 24
Wing
Entry 4 GEISHA Id GHOX4.6.Rogina.1992 Data Source Publication Complete cDNA Template Probe show AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
Citation Rogina B, Coelho CN, Kosher RA, Upholt WB. The pattern of expression of the chicken homolog of HOX1I in the developing limb suggests a possible role in the ectodermal inhibition of chondrogenesis. Dev Dyn. 1992 Jan;193(1):92-101. Copyright 0 1992 WILEY-LISS, INC. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # M81249.1).
no images
Entry 5 GEISHA Id HOXD11.Vargas.2008 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204620.1 ).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 24
stage 24
Leg Wing 25-30 stage 26
stage 26
stage 29
stage 29
stage 30
stage 30
Leg Wing 31-34 stage 34
stage 34
stage 34
Leg Wing
Entry 6 GEISHA Id Hoxd-11.Nelson.1996 Data Source Publication Complete cDNA Template Probe show AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
Citation Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66. Copyright Copyright © 1996 by Company of Biologists Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( NM_204620).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 19
stage 19
stage 23
stage 23
stage 23
stage 23
Leg Wing 25-30 stage 25
stage 25
stage 25
stage 25
stage 25
stage 26
stage 27
stage 27
stage 27
stage 27
stage 29
Leg Wing 31-44 stage 44
stage 44
stage 44
stage 44
Entry 7 GEISHA Id Hoxd11.Yakushiji-Kaminatsui.2018 Data Source Publication Complete cDNA Template Probe show AAAGCCTCTTGTGCAATAGATGGATCTCGTTCAACGCATTGAAGCCTCCCGGTCGCTCGCAATCGCGAAAAGGAAGACA TGACCGAGTTTGACGATTGCAGTCACGGCGCATCCAATATGTATCTGCCAGGGTGCGCTTATTACGTCTCGCCCTCAGA CTTCTCGACGAAACCCTCTTTTTTGTCGCAATCGTCTTCCTGTCAAATGACTTTTCCTTATTCTTCTAATTTACCTCAT GTCCAACCTGTGCGCGAAGTGGCATTCAGGGAATACGGATTAGAGCGCGGCAAATGGCAGTACAGGGGCAGTTACGCTC CCTATTACTCAGCTGAAGAGGTGATGCACAGAGACTTTCTGCAGCCCGCGAACAGGAGGACGGAAATGCTATTCAAAAC GGACCCCGTGTGCGGCCACCACGGAGCGTCCCCCGCCGCCTCCAACTTCTACGGCTCGGTGGGGAGGAACGGCATCCTG CCGCAGGGCTTCGACCAGTTCTACGAGCCGGCCCCCGCGCCCCCGTACCAGCAGCACTCCGAGGGCGAGGGGGACGCGG ACAAGGGCGAGCTGAAGCCCCAGCACAGCGCCTGCAGCAAGGCACCTTCCGGCCAGGAGAAGAAAGTGACAACGGCGAG CGGCGCCGCTTCCCCTCCCGGTGAGGCTGTTGCAGAGAAGAGCAACAGTTCAGCAGTTCCTCAGCGATCGAGGAAAAAG AGGTGTCCCTATACCAAATATCAGATAAGAGAACTGGAACGTGAGTTTTTCTTCAACGTGTACATAAACAAAGAGAAAA GACTGCAGTTGTCCAGAATGCTCAACCTCACTGACCGGCAAGTTAAAATCTGGTTCCAGAATCGAAGGATGAAAGAAAA GAAACTGAACAGAGATCGACTCCAATACTTCACTGGAAATCCCTTGTTTTGAGGAGGAAAAAAAGAAAGAAAAAAAAAA GAAAGGAAAAAAAAAAAAGAAAGGAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
Citation Nayuta Yakushiji-Kaminatsui, Lucille Lopez-Delisle, Christopher Chase Bolt, Guillaume Andrey, Leonardo Beccari, Denis Duboule. Similarities and differences in the regulation of HoxD genes during chick and mouse limb development. PLoS Biol. 2018 Nov 26;16(11):e3000004. DOI: 10.1371/journal.pbio.3000004. Copyright Copyright © 2018 Yakushiji-Kaminatsui et al. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204620.1). Hoxd11 is also known as GHOX4.6 in NCBI.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 20
stage 20
stage 22
stage 22
Leg Wing 25-28 stage 28
stage 28
Leg Wing all
Mouse Frog Fruit Fly Zebra Finch Zebrafish