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IRX1 iroquois homeobox 1 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol IRX1 Official Full Name iroquois homeobox 1 CGNC ID 9961 also known as iroquois-class homeodomain protein IRX-1|iroquois homeobox protein 1|iroquois homologue-1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id IRX1.UApcr Data Source GEISHA ISH Analysis Forward cDNA Template Primer AACACCGCAAGAACCCCTACCC Reverse cDNA Template Primer AATTAACCCTCACTAAAGGAAGCCCCATTTGTCCAGTTGTG cDNA Template Length 675 Forward cDNA Template Probe show NTTATCCATGCGTTGGACTGCCATCGGACGTGTGAGTCCATGGCTGGGGAGAAAGGCGGGATGCTGGATCTGTGAAGAA GTGTGGGTGACCTGGGCAGGGGGAGGTGGTGGGGGGGAGGATTTCAGGGCACCATCAGGGCTGGTCGCAGTCTCTGCCA AAGACCAGATCTTGGGTTTGCTGTGAGATGGCATCTGTAAATTGCTCTGTCCCCCGGGGCTAATGATTCGCGTGCTGTT GTCAGAGGCCTCCTTCACCATGGCCAGAGCATCTTTGGGTTTCAGCCCTTCAGATCCTGACAGTGACAATTCCTTGTCT TTTTCCAAGCGCTCCTCTTCACTGCTTTGTCTCAGGAGCTCAGGCTTCTCCTCCTCTTCCTCATTGCTCTGTTCCCCAT CGTTTTCATCAATTTTATCTATGTCTATGCTCTCCAGGTCGATCTCCTCATCGTCTTCGGTCTTCTCAGGGTCCCCCTC GTTATCGCTGCCAAAAAGGTTAGCATCTTCTTGGTCCTTACTCCTGGAGCCCCAGGTCACCTTGTTCTCCTTCTTGAGG CGGCGGCGGGCGTTGGCGAACCAGGTGGAGACCTGGGTGAGGGTCATCTTGGTGATGATGGCCAGCATGATCTTCTCGC CCTTGGTAGGGTAGGGGTTCTTGCAGTATTAAACN
Entry 2 GEISHA Id IRX1.Khudyakov.2009 Data Source Publication Complete cDNA Template Probe show GCGGCTCGAGGGGGAACAGAGCAATGAGGAAGAGGAGGAGAAGCCTGAGCTCCTGAGACAAAGCAGTGAAGAGGAGCGC TTGGAAAAAGACAAGGAATTGTCACTGTCAGGATCTGAAGGGCTGAAACCCAAAGATGCTCTGGCCATGGTGAAGGAGG CCTCTGACAACAGCACGCGAATCATTAGCCCCGGGGGACAGAGCAATTTACAGATGCCATCTCACAGCAAACCCAAGAT CTGGTCTTTGGCAGAGACTGCGACCAGCCCTGATGGTGCCCTGAAATCCTCCCCCCCACCACCTCCCCCTGCCCAGGTC ACCCACACTTCGCCACAGATCCAGCATCCCGCCTTTCTCCCCAGCCATGGACTCTACACGTGCCAGATTGGCAAGTTTC ACAACTGGACAAATGGGGCTTTTCTCACGCAGAGTTCCCTGCTAAACGTGAGGTCGTTTTTGGGAGTAAATCACCACCA TGCCACTCACCACAAACACCAACTCCAGGCCCAGCAGCAGCCTTCTGTTTTAACAGCCACCCTGGGAGCCCTAAGCAGT GAAAAGCCTTCAGAGAGGACCAGTCCCAAACACATAGAAAATGTCCCAAGAACCGATTCCCCACCTCAGCCACTCAAAT CGCCCTTCCAGCCTGTCCGTGACAACTCTTTGCCTCAGCAAGAGGGAACACCGAGAATTTTAACAGCTCTCCCTTCGGC TTGATTAAATGGTTTGCTGAAAAACCACAATATTACAGAGACTTGGTCTTTAAGGACAGAAAACCAAAACACAACGACA CAC
Citation Khudyakov J, Bronner-Fraser M. Comprehensive spatiotemporal analysis of early chick neural crest network genes. Dev Dyn. 2009 Mar;238(3):716-23. Copyright Published Online: 22 Feb 2009
Copyright © 2009 Wiley-Liss, Inc. Comments The sequence below was obtained from NCBI (BU365297) using the information provided in the publication.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 4 stage 4
Placcode
Entry 3 GEISHA Id IRX1.Abello.2010 Data Source Publication Complete cDNA Template Probe show ATGTCCTTCCCCCAGCTGGGCTACCCGCAGTACCTCAGCGCCAGCCAGGCGGTGTACGGCAGCGAGCGGCCCGGGGTGC TGGCCGCCGCCGCCGCAGCCGCCGCAGCCGCCGCCGCCGCCTCGGGCCGGCCCGCGGGCGCCGAACTGGGCAGCGGCTC GGCCGCTGTCACCTCGGTGCTGGGCATGTACGCGGGGCCCTACAGCGCCCCCAACTACAGCGCCTTCCTGCCCTACACC GCCGACCTCGGCCTCTTCTCGCAGATGGGCTCCCAGTACGAGCTGAAAGATAATCCGGGTGTCCATCCTGCTACCTTCG CAGCCCACACCGCCCCCGGCTATTATCCCTACGGACAGTTCCAGTATGGGGACCCGGGGCGACCCAAAAATGCCACCCG GGAGAGTACCAGCACCCTCAAGGCCTGGCTCAATGAACACCGCAAGAACCCCTACCCTACCAAGGGCGAGAAGATCATG CTGGCCATCATCACCAAGATGACCCTCACCCAGGTCTCCACCTGGTTCGCCAACGCCCGCCGCCGCCTCAAGAAGGAGA ACAAGGTGACCTGGGGCTCCAGGAGTAAGGACCAAGAAGATGCTAACCTTTTTGGCAGCGATAACGAGGGGGACCCTGA GAAGACCGAAGACGATGAGGAGATCGACCTGGAGAGCATAGACATAGATAAAATTGATGAAAACGATGGGGAACAGAGC AATGAGGAAGAGGAGGAGAAGCCTGAGCTCCTGAGACAAAGCAGTGAAGAGGAGCGCTTGGAAAAAGACAAGGAATTGT CACTGTCAGGATCTGAAGGGCTGAAACCCAAAGATGCTCTGGCCATGGTGAAGGAGGCCTCTGACAACAGCACGCGAAT CATTAGCCCCGGGGGACAGAGCAATTTACAGATGCCATCTCACAGCAAACCCAAGATCTGGTCTTTGGCAGAGACTGCG ACCAGCCCTGATGGTGCCCTGAAATCCTCCCCCCCACCACCTCCCCCTGCCCAGGTCACCCACACTTTGCCACAGATCC AGCATCCCGCCTTTCTCCCCAGCCATGGACTCTACACGTGCCAGATTGGCAAGTTTCACAACTGGACAAATGGGGCTTT TCTCACGCAGAGTTCCCTGCTAAACGTGAGGTCGTTTTTGGGAGTAAATCACCACCATGCCACTCACCACAACCACCAC CTCCAGGCCCAGCAGCAGCCTTCTGTTTTAACAGCCACCCTGGGAGCCCTAAGCAGTGAAAAGCCTTCAGAGAGGACCA GTCCCAAACACATAGAAAATGTCCCAAGAACCGATTCCCCACCTCAGCCACTCAAATCGCCCTTCCAGCCTGTCCGCGA CAACTCTTTGCCTCAGCAAGAGGGAACTCCGAGAATTTTAACAGCTCTCCCTTCGGCTTGA
Citation Abelló G, Khatri S, Radosevic M, Scotting PJ, Giráldez F, Alsina B., Independent regulation of Sox3 and Lmx1b by FGF and BMP signaling influences the neurogenic and non-neurogenic domains in the chick otic placode. Dev Biol. 2010 Mar 1;339(1):166-78. Epub 2010 Jan 4. Copyright Copyright © 2009 Elsevier Inc. All rights reserved. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001030338.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 1 stage 1
Ear/Otic Placode
Entry 4 Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 18
stage 18
Spinal Cord
Entry 5 GEISHA Id IRX1.Anderson.2021 Data Source Direct Submission Complete cDNA Template Probe show ATATTTCTGCCGCTCCTGCCGCCGACGCCAGTGCTGCCAGTGCCGCCGCCCCGGAGATGTCCTTCCCCCAGCTGGGCTA CCCGCAGTACCTCAGCGCCAGCCAGGCGGTGTACGGCAGCGAGCGGCCCGGGGTGCTGGCCGCCGCCGCCGCAGCCGCC GCAGCCGCCGCCGCCGCCTCGGGCCGGCCCGCGGGCGCCGAACTGGGCAGCGGCTCGGCCGCTGTCACCTCGGTGCTGG GCATGTACGCGGGGCCCTACAGCGCCCCCAACTACAGCGCCTTCCTGCCCTACACCGCCGACCTCGGCCTCTTCTCGCA GATGGGCTCCCAGTACGAGCTGAAAGATAATCCGGGTGTCCATCCTGCTACCTTCGCAGCCCACACCGCCCCCGGCTAT TATCCCTACGGACAGTTCCAGTACGGGGACCCGGGGCGACCCAAAAATGCCACCCGGGAGAGTACCAGCACCCTCAAGG CCTGGCTCAATGAACACCGCAAGAACCCCTACCCTACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGAC CCTCACCCAGGTCTCCACCTGGTTCGCCAACGCCCGCCGCCGCCTCAAGAAGGAGAACAAGGTGACCTGGGGCTCCAGG AGTAAGGACCAAGAAGATGCTAACCTTTTTGGCAGCGATAACGAGGGGGACCCTGAGAAGACCGAAGACGATGAGGAGA TCGACCTGGAGAGCATAGACATAGATAAAATTGATGAAAACGATGGGGAACAGAGCAATGAGGAAGAGGAGGAGAAGCC TGAGCTCCTGAGACAAAGCAGTGAAGAGGAGCGCTTGGAAAAAGACAAGGAATTGTCACTGTCAGGATCTGAAGGGCTG AAACCCAAAGATGCTCTGGCCATGGTGAAGGAGGCCTCTGACAACAGCACGCGAATCATTAGCCCCGGGGGACAGAGCA ATTTACAGATGCCATCTCACAGCAAACCCAAGATCTGGTCTTTGGCAGAGACTGCGACCAGCCCTGATGGTGCCCTGAA ATCCTCCCCCCCACCACCTCCCCCTGCCCAGGTCACCCACACTTCGCCACAGATCCAGCATCCCGCCTTTCTCCCCAGC CATGGACTCTACACGTGCCAGATTGGCAAGTTTCACAACTGGACAAATGGGGCTTTTCTCACGCAGAGTTCCCTGCTAA ACGTGAGGTCGTTTTTGGGAGTAAATCACCACCATGCCACTCACCACAACCACCACCTCCAGGCCCAGCAGCAGCCTTC TGTTTTAACAGCCACCCTGGGAGCCCTAAGCAGTGAAAAGCCTTCAGAGAGGACCAGTCCCAAACACATAGAAAATGTC CCAAGAACCGATTCCCCACCTCAGCCACTCAAATCGCCCTTCCAGCCTGTCCGTGACAACTCTTTGCCTCAGCAAGAGG GAACACCGAGAATTTTAACAGCTCTCCCTTCGGCTTGATTAAATGGTTTGCTGAAAAACAAAATATTACAGAGACTGGT CTTAAGGACAGAAAAACAAAACAAAAAGAAAAAAAAAAAAAAGGAAACTGTATAAACGACTCTCATCCATCTCTTTTTT GCAATAAGGTGGTGCAAATCCATTAAGGCGATTAAACAATTCTGTAGATGGATCCCCTCCTTCATTGTACCATTTCAGA TCGTGTTATTCTAACCATTCTTGGATTATTTGTTTGGTAAATGTTTCCCATGTGTTTGTGTTTTTTCTGTATATAGAGT GATTTCAGATTGTAAATAGCGCGTCAGCAAAACTTGTCTAAATCATATATTTTTGTCTAATAAACTAAATGAAATTA
Comments Images provided by Claire Anderson. As insufficient information was provided to verify sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_001030338.2). Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Entry 6 GEISHA Id IRX1.Anderson.2019 Data Source Publication Complete cDNA Template Probe show ATATTTCTGCCGCTCCTGCCGCCGACGCCAGTGCTGCCAGTGCCGCCGCCCCGGAGATGTCCTTCCCCCAGCTGGGCTA CCCGCAGTACCTCAGCGCCAGCCAGGCGGTGTACGGCAGCGAGCGGCCCGGGGTGCTGGCCGCCGCCGCCGCAGCCGCC GCAGCCGCCGCCGCCGCCTCGGGCCGGCCCGCGGGCGCCGAACTGGGCAGCGGCTCGGCCGCTGTCACCTCGGTGCTGG GCATGTACGCGGGGCCCTACAGCGCCCCCAACTACAGCGCCTTCCTGCCCTACACCGCCGACCTCGGCCTCTTCTCGCA GATGGGCTCCCAGTACGAGCTGAAAGATAATCCGGGTGTCCATCCTGCTACCTTCGCAGCCCACACCGCCCCCGGCTAT TATCCCTACGGACAGTTCCAGTACGGGGACCCGGGGCGACCCAAAAATGCCACCCGGGAGAGTACCAGCACCCTCAAGG CCTGGCTCAATGAACACCGCAAGAACCCCTACCCTACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGAC CCTCACCCAGGTCTCCACCTGGTTCGCCAACGCCCGCCGCCGCCTCAAGAAGGAGAACAAGGTGACCTGGGGCTCCAGG AGTAAGGACCAAGAAGATGCTAACCTTTTTGGCAGCGATAACGAGGGGGACCCTGAGAAGACCGAAGACGATGAGGAGA TCGACCTGGAGAGCATAGACATAGATAAAATTGATGAAAACGATGGGGAACAGAGCAATGAGGAAGAGGAGGAGAAGCC TGAGCTCCTGAGACAAAGCAGTGAAGAGGAGCGCTTGGAAAAAGACAAGGAATTGTCACTGTCAGGATCTGAAGGGCTG AAACCCAAAGATGCTCTGGCCATGGTGAAGGAGGCCTCTGACAACAGCACGCGAATCATTAGCCCCGGGGGACAGAGCA ATTTACAGATGCCATCTCACAGCAAACCCAAGATCTGGTCTTTGGCAGAGACTGCGACCAGCCCTGATGGTGCCCTGAA ATCCTCCCCCCCACCACCTCCCCCTGCCCAGGTCACCCACACTTCGCCACAGATCCAGCATCCCGCCTTTCTCCCCAGC CATGGACTCTACACGTGCCAGATTGGCAAGTTTCACAACTGGACAAATGGGGCTTTTCTCACGCAGAGTTCCCTGCTAA ACGTGAGGTCGTTTTTGGGAGTAAATCACCACCATGCCACTCACCACAACCACCACCTCCAGGCCCAGCAGCAGCCTTC TGTTTTAACAGCCACCCTGGGAGCCCTAAGCAGTGAAAAGCCTTCAGAGAGGACCAGTCCCAAACACATAGAAAATGTC CCAAGAACCGATTCCCCACCTCAGCCACTCAAATCGCCCTTCCAGCCTGTCCGTGACAACTCTTTGCCTCAGCAAGAGG GAACACCGAGAATTTTAACAGCTCTCCCTTCGGCTTGATTAAATGGTTTGCTGAAAAACAAAATATTACAGAGACTGGT CTTAAGGACAGAAAAACAAAACAAAAAGAAAAAAAAAAAAAAGGAAACTGTATAAACGACTCTCATCCATCTCTTTTTT GCAATAAGGTGGTGCAAATCCATTAAGGCGATTAAACAATTCTGTAGATGGATCCCCTCCTTCATTGTACCATTTCAGA TCGTGTTATTCTAACCATTCTTGGATTATTTGTTTGGTAAATGTTTCCCATGTGTTTGTGTTTTTTCTGTATATAGAGT GATTTCAGATTGTAAATAGCGCGTCAGCAAAACTTGTCTAAATCATATATTTTTGTCTAATAAACTAAATGAAATTA
Citation Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5. Copyright Copyright © 2019 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030338 ).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-12 stage 12
Heart
Mouse Frog Fruit Fly Zebra Finch Zebrafish