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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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KDM7A
lysine demethylase 7A

Gene

Official Symbol	KDM7A
Official Full Name	lysine demethylase 7A
CGNC ID	9733
also known as	JHDM1D, lysine-specific demethylase 7A\|jumonji C domain containing histone demethylase 1 homolog D\|lysine (K)-specific demethylase 7A
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI

Sequence Information

Genomic
RNA	XM_416344
Polypeptide	XP_416344

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	80853	ENSG00000006459
Mouse	338523	ENSMUSG00000042599	All phenotypic alleles (2):Targeted, other(2)	MGI:2443388
Xenopus	780121, 444005			5900919
Zebrafish	503902, 321248	ENSDARG00000018559, ENSDARG00000018111	ZDB-GENE-050309-32, ZDB-GENE-030131-9829	ZFIN:ZDB-GENE-050309-32, ZFIN:ZDB-GENE-030131-9829

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	418110
Ensembl Gene	ENSGALG00000012848
KEGG	gga:418110

Entry 1

GEISHA Id	KDM7A.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGAGGAGTGGGTAGCAGTG
Reverse cDNA Template Primer	TCTCCACAGCTGCCAGAAAG	cDNA Template Length	725
Complete cDNA Template Probe	show TGAGGAGTGGGTAGCAGTGACTGAATAACTCAGAGAATTAAGCCTGGTATGATAACTCGTTTTGAAGGAGAACCTTTTT TGAGAAGTCAGAAAAGGATTTGGATTTGACATAAAAACTTAATTTTCTTTTTATAGGCAGACAGAACAGTAGGAAATGA AACATTGCAGGGGTTTTCCCATTCTCTCAAGTTCTCACGTTCCTACAACTAGGAGAAAACAGAACTATGAAAAGAAAAC CAAAACCAAAAGATAAAAATGGAAAGACCACCCAGAAACTGTTATCTATTACCCTTCCAGCAACTTTCCCTTTTCTCCT CCTGCTAGACTTGTTAATGAACCCTGGCTACAAGGTAGCCTTTAATGACCTCTGAGGTAGATTACCTATGCAACCTATA ATACTCTTCATGAATCCATTCTTAAATACAATTTTGAAAGGGTTAGATGTTGAGAGTTAATACCGTTGCTTTCTGATCA CGTGGGGGATTTGGAGGGGGCTGGGTATTATTTTTTGGTAGTTGAAGTGCTTGTGCTACCTTTAGTGGTGATATAAGAG TAGAGTGTCATCATCACCCTTTAGAAGCTTCAGCTTTTCCTAGGCTTTACTATATGCCATAAGCTACCTTCATTCTCAA AGCCATAAAGTTGAAGACGTTGAAAATTTTGCAGGGCTTCAGAGTCGCAGCTGGCACGAATCTTGCTGATTGCTTTCTG GCAGCTGTGGAGA

Stage

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Comments (click to highlight)

4-6

stage 4

Area Opaca
Epiblast
Primitive Streak

7-12

stage 10

stage 12

Blood Islands
Forebrain
Head Mesenchyme
Heart Tube
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Sinus Venosus
Somites
Widespread Expression
extraembryonic mesoderm

13-18

stage 18

Widespread Expression

19-24

stage 22

stage 23

Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Lung
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme

25-26

stage 26

Head Mesenchyme
Widespread Expression

Entry 2

GEISHA Id	KDM7A.Huang.2010	Data Source	Publication
Complete cDNA Template Probe	show `CCACCCCCTATCAGCAACCAGGCGACAAAAGGCAAACGTCCAAAGAAAGGAATGGCAACTGCTAAACAGCGCCTTGGGA AGATCTTGAAGCTGAACCGCAATGGCCATGCACGCTTCTTTGTTTAATGTAGCTGCTACTTCTACTACTGCTGTCTTTC CTATACAGACGAGTATTGAGGTTGACAGAGCCTGG`
Citation	Huang C, Chen J, Zhang T, Zhu Q, Xiang Y, Chen CD, Jing N. The dual histone demethylase KDM7A promotes neural induction in early chick embryos. Dev Dyn. 2010 Dec;239(12):3350-7.
Copyright	Dev. Dyn Copyright © 2010 John Wiley & Sons, Inc. All Rights Reserved.
Comments	The probe for KDM7A was amplified by PCR using the following primers: 5'-CCACCCCCTATCAGCAACC-3' and 5'-CCAGGCTCTGTCAACC-TCAA TAC-3'and was extracted from NCBI acc. # XM_416344.2.