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LBX1 ladybird homeobox 1 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol LBX1 Official Full Name ladybird homeobox 1 CGNC ID 61460 also known as transcription factor LBX1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Entrez Gene Ensembl Gene Genetic Phenotypes MOD Fruit Fly Human Mouse Xenopus Zebrafish
Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id LBX1.UApcr Data Source GEISHA ISH Analysis Forward cDNA Template Primer CAAACCCCTCACCCCTTTCAG Reverse cDNA Template Primer AATTAACCCTCACTAAAGGCCTTCATCTCCTCCAGGTCG cDNA Template Length 477 Forward cDNA Template Probe show CAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTTACGCGCTGTGCGGGACG GCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGCGCTGCTCTCGCAGACGT CGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTGCTGCAGGCGGCCGAAGG AAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGACGGCCTTCACCAACCAC CAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGACCAGATCGCCCAGCAGC TGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACG
Entry 2 GEISHA Id Lbx1.Noden.2006 Data Source Publication Complete cDNA Template Probe show TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
Citation Noden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review. Copyright Copyright © 2006 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001178143).
Entry 3 GEISHA Id LBX1.Bothe.2007 Data Source Publication Complete cDNA Template Probe show TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
Citation Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409. Copyright Copyright © 2007 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001178143).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 18
Dermatome Myotome
Entry 4 GEISHA Id Lbx1.Bonafede.2006 Data Source Publication Complete cDNA Template Probe show TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
Citation Bonafede A, Köhler T, Rodriguez-Niedenführ M, Brand-Saberi B. BMPs restrict the position of premuscle masses in the limb buds by influencing Tcf4 expression. Dev Biol. 2006 Nov 15;299(2):330-44. Epub 2006 Jun 15. Copyright Copyright © 2006 Elsevier B.V. All rights reserved. Comments The following probes were used: Sf/Hgf (Thery et al., 1995), qPax3, MyoD and Myf5, Lbx1, Bmp2 and Bmp4, Tcf4. Probes used in this study were kindly provided by Claudio Stern, Gabrielle Kardon, Christophe Marcelle, Bruce M. Paterson, Susanne Dietrich and Paul Brickell. Thus insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_001178143).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 24
stage 24
stage 24
stage 24
stage 24
stage 24
Wing Wing Muscles
Entry 5 GEISHA Id LBX1.Kanamoto.2006 Data Source Publication Complete cDNA Template Probe show TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
Citation Kanamoto T, Terada K, Yoshikawa H, Furukawa T. Cloning and expression pattern of lbx3, a novel chick homeobox gene. Gene Expr Patterns. 2006 Mar;6(3):241-6. Epub 2005 Dec 27. Copyright Reprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001178143).
Entry 6 GEISHA Id Lbx1.Christ.2002 Data Source Publication Complete cDNA Template Probe show TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
Citation Christ B, Brand-Saberi B. Limb muscle development. Int J Dev Biol. 2002;46(7):905-14. Copyright "Reprinted from Int. J. Dev. Biol., 46, Christ B, Brand-Saberi B, Limb muscle development, 905-14, Copyright (2002), with permission from Copyright © 2002 UBC Press". All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001178143).
Entry 7 GEISHA Id LBX1.Wilm.2004 Data Source Publication Complete cDNA Template Probe show TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
Citation Wilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89. Copyright Copyright © 2004 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001178143).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 31-35 stage 35
Dermomyotome Somites
Entry 8 GEISHA Id LBX1.Alvarez.2003 Data Source Publication Complete cDNA Template Probe show TGCCACCATGACTTCCAAAGAAGAAGCCAAGCCTTCCTCGGGGGAAGAACGACGGAGGAGCCCTTTGGATCACCTCCCG CCTCCGGCTAACTCCAACAAACCCCTCACCCCTTTCAGCATCGAGGACATCCTCAACAAGCCGTCGGTGCGGAGGAGTT ACGCGCTGTGCGGGACGGCCCACCTGCTGTCCGCCGCCGAGAAGCACCCCGCGGCCGGGCTGCCGCTGTCGGGCCGGGC GCTGCTCTCGCAGACGTCGCCGCTGTGCGCCCTGGAGGAGCTGGCCAGCAAAACCTTCAAGGGGCTGGAAGTCAGCGTG CTGCAGGCGGCCGAAGGAAGGGACGGGATGACGATCTTCGGGCAGCGGCAGGCGCCGAAGAAGCGTCGGAAGTCTCGGA CGGCCTTCACCAACCACCAGATCTACGAGCTGGAGAAGCGTTTCCTCTACCAAAAATACCTGTCGCCGGCGGACCGGGA CCAGATCGCCCAGCAGCTGGGGCTCACCAACGCCCAGGTCATCACCTGGTTCCAGAACCGCCGCGCCAAGCTCAAACGC GACCTGGAGGAGATGAAGGCCGACGTGGAGTCGGCCAAGAAGCTGGGCCCCAACCCCGCCGTGGACATCGCGGCCTTGG CCGAGCTGGAGCCCAGCGCCGAGGGTCGGGGCAAAGCGCGGCCCGGTTCCCCGCCGCCGGGAAGCGAGGAGGAGGAGGA CGAGGAGGAGGAGGACGTGGAGATCGACGTGGATGACTGAGGGGCGGC
Citation Alvares LE, Schubert FR, Thorpe C, Mootoosamy RC, Cheng L, Parkyn G, Lumsden A, Dietrich S. Intrinsic, Hox-dependent cues determine the fate of skeletal muscle precursors. Dev Cell. 2003 Sep;5(3):379-90. Copyright Copyright © 2012 Elsevier B.V. All rights reserved. Comments Degenerate primers
CAGVHMYCGMACRDCYTTYAC and YTBYKSHRYTTDGYVCGNGC
directed against the first and third helix of homeobox genes
were used for the first amplification, followed by a second round using
the nested primer pair ATGGGCCCBCAGMTYKAVRDRYTGGA
and TAGCGGCCGCDGYVCGSCGRTTYTGRAACC.
As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_001178143.1 ).
Mouse Frog Fruit Fly Zebra Finch Zebrafish