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LHX1 LIM homeobox 1 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol LHX1 Official Full Name LIM homeobox 1 CGNC ID 4028 also known as LIM-1, LIM/homeobox protein Lhx1|LIM homeobox protein 1|domesticus (clone 2.3 kB) lim-1|homeobox protein Lim-1, Lim-1, Homeobox protein LIM-1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Molecular Function nucleic acid binding transcription factor activity , sequence-specific DNA binding , more... sequence-specific DNA binding transcription factor activity , transcription corepressor activity , zinc ion binding Biological Process S-shaped body morphogenesis , anatomical structure formation involved in morphogenesis , more... anatomical structure morphogenesis , anterior/posterior axis specification , anterior/posterior pattern specification , branching involved in ureteric bud morphogenesis , cell-cell signaling , cerebellar Purkinje cell differentiation , cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation , cerebellum development , cervix development , comma-shaped body morphogenesis , dorsal/ventral pattern formation , ectoderm formation , embryonic pattern specification , embryonic retina morphogenesis in camera-type eye , embryonic viscerocranium morphogenesis , endoderm formation , epithelium development , forebrain regionalization , gastrulation with mouth forming second , head development , horizontal cell localization , kidney development , kidney morphogenesis , lateral motor column neuron migration , mesonephros development , metanephric S-shaped body morphogenesis , metanephric renal vesicle morphogenesis , motor neuron axon guidance , negative regulation of transcription, DNA-templated , nephric duct elongation , nephric duct formation , nephric duct morphogenesis , oviduct epithelium development , paramesonephric duct development , pattern specification process , positive regulation of anterior head development , positive regulation of branching involved in ureteric bud morphogenesis , positive regulation of embryonic development , positive regulation of gastrulation , positive regulation of nephron tubule epithelial cell differentiation , positive regulation of transcription, DNA-templated , post-embryonic development , primitive streak formation , pronephros development , regulation of RNA biosynthetic process , regulation of gene expression , renal vesicle morphogenesis , retina layer formation , somite rostral/caudal axis specification , spinal cord association neuron differentiation , spinal cord motor neuron differentiation , telencephalon development , transcription from RNA polymerase II promoter , ureteric bud development , urogenital system development , uterine epithelium development , vagina development , ventral spinal cord development Cellular Component nucleus , protein complex
Links to other databases
Entry 1 GEISHA Id LHX1.UApcr Data Source GEISHA ISH Analysis Forward cDNA Template Primer TTATAAAAGCTTGCGGCCGCAGAATATCCGATACCCCACTCTCAGAAATAAC Reverse cDNA Template Primer GCTCTAGAAATTAACCCTCACTAAAGGCCGAAACACCGAAAGAAGTCG cDNA Template Length 612 Reverse cDNA Template Probe show GTGCGGGCTGCAAAAGGCCAATCTTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCA GTGCTGTGAATGTAAATGCAATTTGACAGANAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTT CGGTGTTTCGGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAG TGTTCCACTTGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGA AAACAAGTTCGTCTGCAAAGAANATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACC GGCAGTGACCCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGT CCGACAAGGAGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAA AGCCAAACAGCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGC
Entry 2 GEISHA Id Lim1.Chapman.2002 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation Chapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Analysis of spatial and temporal gene expression patterns in blastula and gastrula stage chick embryos. Dev Biol. 2002 May 1;245(1):187-99. Copyright 2002 Elsevier Science (USA). All rights reserved.
Entry 3 GEISHA Id Lim1.Abe.2006 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation Abe Y, Chen W, Huang W, Nishino M, Li YP.
CNBP regulates forebrain formation at organogenesis stage in chick embryos. Dev Biol. 2006 Jul 1;295(1):116-27. Epub 2006 Apr 19. Copyright Reprinted from Developmental Biology, 295, Yoko Abea, Wei Chena, Wei Huangc, Mizuho Nishinod and Yi-Ping Li, CNBP regulates forebrain formation at organogenesis stage in chick embryos, 116-127, Copyright 2006, with permission from Elsevier.
Copyright © 2006 Elsevier B.V. All rights reserved. Comments As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205413)
Entry 4 GEISHA Id Lim1.Chapman.2008 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Comments Images Provided by Susan Chapman
Entry 5 GEISHA Id LIM1.James.2005 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation James RG, Schultheiss TM. Bmp signaling promotes intermediate mesoderm gene expression in a dose-dependent, cell-autonomous and translation-dependent manner. Dev Biol. 2005 Dec 1;288(1):113-25. Epub 2005 Oct 21. Copyright Copyright © 2005 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205413). LIM1 is also known as LHX1 in NCBI.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-11 stage 11
Intermediate Mesoderm all
Entry 6 GEISHA Id LHX1.Wilm.2004 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation Wilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89. Copyright Copyright © 2004 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205413).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-9 stage 9
Intermediate Mesoderm
Entry 7 GEISHA Id LIM1.Ohuchi.2010 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation Ohuchi H, Fukui H, Matsuyo A, Tomonari S, Tanaka M, Arai H, Noji S, Aoki J. Autotaxin controls caudal diencephalon-mesencephalon development in the chick. Dev Dyn. 2010 Oct;239(10):2647-58. Copyright Copyright © 19992011 John Wiley & Sons, Inc. All Rights Reserved. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205413.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-17 stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
stage 17
Diencephalon Pharyngeal Arches and Clefts
Entry 8 GEISHA Id LIM1.Merchan.2011 Data Source Publication Complete cDNA Template Probe show GGAGCAAAGTGTTCCACTTGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATAT CATAGACGAAAACAAGTTCGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCA GCTACCACCGGCAGTGACCCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCG CCAACGTGTCCGACAAGGAGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCAC CACCATCAAAGCCAAACAGCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAG CAGCTGGCGCAGGAGACCGGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCG
Citation Merchán,P, Bardet, SM, Puelles, L, Ferran, JL, Comparison of Pretectal Genoarchitectonic Pattern between Quail and Chicken Embryos. Front Neuroanat. 2011; 5: 23. Prepublished online 2010 December 29. Published online 2011 April 5 Copyright Copyright © 2011 Merchán, Bardet, Puelles and Ferran. Comments The probe was amplified by PCR using the following primers:
5′-GGAGCAAAGTGTTCCACTTG-3′ and 5′-CGGTTCTGGAACCACACCTGG-3′ and was extracted from NCBI Acc. # NM_205413.1.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-28 stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
stage 28
Diencephalon Mesencephalon Pineal Gland
Entry 9 GEISHA Id LIM1.Kao.2009 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation Kao TJ, Palmesino E, Kania A. SRC family kinases are required for limb trajectory selection by spinal motor axons. J Neurosci. 2009 Apr 29;29(17):5690-700. Copyright Copyright © 2009-12 by the Society for Neuroscience Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205413.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-26 stage 26
stage 26
Spinal Cord
Entry 10 GEISHA Id LIM1/2.Davey.2006 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation Davey MG, Paton IR, Yin Y, Schmidt M, Bangs FK, Morrice DR, Smith TG, Buxton P, Stamataki D, Tanaka M, Münsterberg AE, Briscoe J, Tickle C, Burt DW. The chicken talpid3 gene encodesa novel protein essentialfor Hedgehog signaling. Genes Dev. 2006 May 15; 20(10): 13651377. Copyright Copyright © 2006, Cold Spring Harbor Laboratory Press Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205413.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-20 stage 20
stage 20
Spinal Cord
Entry 11 GEISHA Id LIM1.Ferran.2007 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation Ferran JL, Sánchez-Arrones L, Sandoval JE, Puelles L. A model of early molecular regionalization in the chicken embryonic pretectum. J Comp Neurol. 2007 Dec 1;505(4):379-403. Copyright Copyright © 19992012 John Wiley & Sons, Inc. All Rights Reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_205413.1).
Entry 12 Entry 13 GEISHA Id LIM1.Fleming.2013 Data Source Publication Complete cDNA Template Probe show ACAATAACAACATACACACATAAAAAAAAAAAAAAAGAAAGCAAACCCACGCCGCTGTTGTCGTCTTTTTGTTTTTATT TCGATTTTTCGCTTGCCATCTGGGACGCCGATACCCCACTCTCAGAAATAACCAAAGACAATGGTTCACTGTGCGGGCT GCAAAAGGCCAATATTGGACCGGTTCTTGTTGAATGTACTGGACAGGGCTTGGCATGTGAAGTGTGTTCAGTGCTGTGA ATGTAAATGCAATTTGACAGAGAAATGCTTTTCGCGAGAAGGCAAGCTTTACTGCAAAAACGACTTCTTTCGGTGTTTC GGGACCAAGTGTGCGGGCTGTGCCCAGGGCATCTCCCCCAGCGACCTGGTCCGCAGGGCGCGGAGCAAAGTGTTCCACT TGAACTGTTTTACGTGTATGATGTGCAACAAGCAGCTCTCCACCGGCGAGGAGCTCTATATCATAGACGAAAACAAGTT CGTCTGCAAAGAAGATTACCTAAATAACAGCAATACTGCCAAAGAAAACAGCCTGCATTCAGCTACCACCGGCAGTGAC CCCAGCCTGTCCCCCGACTCCCAAGACCCCTCCCAGGACGACGCCAAGGACTCGGAAAGCGCCAACGTGTCCGACAAGG AGACGGGCAGCAACGAGAACGACGACCAGAACCTGGGGGCCAAGCGGCGGGGGCCCCGCACCACCATCAAAGCCAAACA GCTAGAGACTCTGAAGGCCGCCTTCGCGGCCACCCCCAAACCCACGCGGCACATCAGGGAGCAGCTGGCGCAGGAGACC GGCCTCAACATGCGCGTCATCCAGGTGTGGTTCCAGAACCGCCGCTCCAAGGAGCGCCGCATGAAGCAGCTGAGCGCGC TGGGCGCCCGCCGGCACGCCTTCTTCCGCAGCCCGCGCAGGATGCGGCCGCTGGTGGACCGCCTGGAGCCCGGCGAGCT GCTCCCCAACGGGCCCTTCTCCTTCTACGGAGATTACCAGAGCGAGTACTACGGCCCCGGGGCGAACTACGAGTTCTTC CCGCAAGGCCCGCCCTCCTCGCAGGCGCAGACGCCGGTGGAGCTGCCGTTCGGGGCGGCGGGCGGACCGCCGGGCACGC CGCTGGGCGCGTTGGAGCACCCGCTGCCCGGGCACCACCCGCCCGGAGAGGCGCAGCGCTTCCCCGACATGCTGGCGCA CCCCGCCGGGGACTCGCCCAGCCCCGAGCCCACCCTGCCCGGCTCCCTGCACTCCATGTCCGCGGAAGTGTTCGGCCCC AGTCCTCCGTTCTCCTCGATATCCGTCAACGGCGGTGCTAACTACGGCAATCACTTGTCACACCCACCAGAAATGAACG AAGCGGCTGTGTGGTAGCTTTAAGCGAACTGGGTCTAAGTAAGTGATGATCATCTAGTCTGCTTGTTGTTACGGTGTAC AGAAATGAGTAAATCTAACATCTCTCCCGCCCTAAGACAATGTCACCTCGGGAACGAACTGTGCCCGGCGGCTCCGAGC GGAGCGCTGCTGCAG
Citation Fleming BM, Yelin R, James RG, Schultheiss TM. A role for Vg1/Nodal signaling in specification of the intermediate mesoderm. Development. 2013 Apr;140(8):1819-29 Copyright © 2013. Published by The Company of Biologists Ltd Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_205413.1).
Mouse Frog Fruit Fly Zebra Finch Zebrafish