GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

MMP16
matrix metallopeptidase 16

Gene
Official SymbolMMP16
Official Full Namematrix metallopeptidase 16
CGNC ID49658
also known asMT3-MMP, matrix metalloproteinase-16|matrix metallopeptidase 16 (membrane-inserted)|matrix metalloproteinase 16 (membrane-inserted)|membrane type-matrix metalloproteinase
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_205197
PolypeptideNP_990528
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human4325ENSG00000156103MIM:602262
Mouse17389ENSMUSG00000028226All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(4) MGI:1276107
Xenopus548746, 4435621007176
Zebrafish572034, 564419ENSDARG00000058876ZDB-GENE-061009-22, ZDB-GENE-061009-22, ZDB-GENE-070820-1ZFIN:ZDB-GENE-061009-22, ZFIN:ZDB-GENE-061009-22, ZFIN:ZDB-GENE-070820-1
Gene Ontology
Molecular Function
Biological Processcell adhesion, cell migration, epithelial tube formation, negative regulation of cell-cell adhesion, more...positive regulation of cell migration, positive regulation of cell-cell adhesion mediated by integrin, regulation of microvillus assembly
Cellular Componentapical plasma membrane, cytoplasm, filopodium, integral component of membrane, lamellipodium, membrane raft, more...microvillus membrane, plasma membrane, ruffle
Links to other databases
Entrez Gene396116
Ensembl GeneENSGALG00000015896
KEGGgga:396116
GEISHA IdMMP16.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAAACGCAACAACTCACGG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGTGGTCCCTTGGCTCTATTAGcDNA Template Length1074
Forward cDNA Template Probeshow
CGCATTGGCTAAGGCCAAAGATTTGACTAACCCTTTGAGAACTATAGTGAACATGCAGGGGAAAACCAGAAGGTACTCA
TGCAATATCAGAGTCATCATTTTAGTTTTCCTTTGAAACTATTACTCTATCTCTGCAGAGGTAAAATGAATTATCATGC
AACATAGTTTAAAAGAGAAATTCAAGATGCTTGAGATAAAAGGTTAAGCTATAAAACTGTAGGCAGTTCAGAAAAATCC
TTGGTAAGTGGTAGAAGATATTAAAACAGGTTTGGTTCCTTTAACCAGAAGGTAGCTGGCAAACACAGCTTTCTCTTTA
TGTTACAAATGCTTTTCTATCAATAATGCAAGTTATTAAAAACACTCACTTGCAGTCACAGGAAATCTGTTTTTAAAAA
ACAACAAAACTGTTTTTCTTTTAAAATCTCTATTTCCCAAACACAATCCTGTAATTTAATGACAATCAAGATTAACATC
CAACAGACTCTGAAAACTGATGCAATAGTTCTCAAAGGGTTACACCAAAATAATACCAGTGTCATGTTTCTCTATAGCA
TCACTGTTACTTTAGATCACTGAAATCCACTTCAGAGACACACTGCTTTTTTACCATGCATTGGAATGAGTACTCCTGA
CAGACCTGTGAAAGGCCTGGGGCAGTTGGCTTGGTACAACTTGGGAAAGATTATGCAGGAAAACCAACCCAAAAATCAA
GCAAACCAATAAAAAGATTCCACTTGAATATGGTGATGAATATAAATGAGTTTAAAACATTGAGTACATAGCCCAGAGC
AGCTGTATAAAACACAAAATGAATGTATTATTAAGGCTGTTACTATATTGCAGATATTTTGGCCCCTTGTTTGTTGGAA
AATGGCTGTCCGAACAGTCTGAAGTCCTGCATGTTATCCGGGTCTCCCACCTGACAAAACTGGAAGTAGGAGTATAGGA
CTTTATCCNCTGCANACAGAAAGCAATCCTCTTTNGGAGACAAAGCTGGTTTTGGGTCTTCTCNCTTTCCTGAAAGTTC
CACCGTG
CommentsNo expression detected stages 3-10
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Unlabeled
 
7-12
stage 8
stage 10
stage 10
stage 11
stage 11
Blood Vessels
Forebrain
Heart
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Unlabeled
trapping
trapping in brain
13-18
stage 15
stage 15
stage 15
stage 15
Blood Islands
Blood Vessels
Eye
Forebrain
Foregut
Heart
Hindbrain
Midbrain
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
 
19-24
stage 19
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 24
Aorta
Cardinal Veins
Forebrain
Foregut
Hindbrain
Leg Mesenchyme
Lung
Mesonephros
Midbrain
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme
 
25
stage 25
stage 25
stage 25
stage 25
Aorta
Foregut
Hindbrain
Lung
Mesonephros
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
 

Mouse

EmageMGI:1276107
MGI GXDMGI:1276107

Frog

Xenbase1007176

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-061009-22, ZDB-GENE-061009-22, ZDB-GENE-070820-1
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona