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NKX2-1 NK2 homeobox 1 The human orthologue of this gene is associated with the following human diseases:
Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol NKX2-1 Official Full Name NK2 homeobox 1 CGNC ID 49266 also known as NKX2.1, TITF1, homeobox protein Nkx-2.1|homeodomain protein NKx2.1|thyroid transcription factor 1, thyroid transcription factor 1, Nkx2.1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id NKX2.1.UApcr Data Source GEISHA ISH Analysis Forward cDNA Template Primer GCATCAGAGCCATCAGACAAACAG Reverse cDNA Template Primer AATTAACCCTCACTAAAGAAGAAAAGCCAAAGCCTCGTG cDNA Template Length 794 Forward cDNA Template Probe show TTGCCCCCGGCTCATCGCTGGGAGGGGCTGGGAGCGGAGCCGGGGGGGTGGGGGAGGTTGCTCTGTGGCTGCGTGCCGC GTCCGCGTTTTTGGGAAAAACCCCAACCCCATCCTCCCCAATCTCTATATTTACATGCAAGTCCTAGACGCTGGCAAAG GGTCCATCTGCAATCCGAGCCTTCGGGCCGTGCCTACCGACGGGCCCCTGTCTGCAGACTGCTCCGTGGTTATTGGTCA GAATTGGTTTAACACCCCACGCAGCAAGCTGGGGGGAAACGGGAAAAAAAGCAAGACCCAAAACCGTCACAGTATCAGC GAACGGAACAAAAAGTCACTCTCTCCCTTTCTCTCTTGGGGGTCCTCAGAGAACCAGTCAGTAAAACGAAAAAGAAAAA AAAATTGANGAAAAAANNAAAAAAAAACCNNTTTNGGGAAAAAAANTTTAANAAAAAAGGAANGAAAATTTTTNAAGGG NCAAGGGAANNCCCCCCCCNTTTNGNANGGGAAAAAAATTTNNNNAANNGGAAAAANCNNCTTTTTNCTTTTNCCCTTT TNGTTTNGCCTGGTTCCGTTCCCCTTTNTTNAACCCTTTCCCCNGGNCNTNCCNNNNACNANGGNGAANCNGGNNTTGG CANTTCCCTTATTCAAAANNGNAAAATTTCGGGNGAAAAAAANTGNAAANTTGCCTNTNCAGGNANAAAGGGTTGGCCA ATTNCTTTCCCNTTTNGGGAAANTNCCCCCCANTTTTTNTNTNANGCCNNTAA
Entry 2 GEISHA Id Nkx2.1 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show TTCTCCCCAGCCGCGGGATTCATGTCGATGAGCCCAAAGCATACGACTCCTTTCTCAGTGTCGGACATCTTGAGTCCTT GGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCAGTAACTTGGGGGCTCCCTTGTCAGCCTACAGACAGTCTCAGGT TTCGCAACCGGCCATGCAGCAACACCCCATGGGCCACAACGGAACGGTGACTGCCGCCTACCATATGACAGCGGCAGGG GTCCCCCAGCTCTCCCACGCTACGATGGGGGGCTACTGCAATGGGAACCTGGGCAACATGAGCGAGCTCCCGCCTTACC AGGACACCATGCGGAACAGCGCTTCGGCGACAGGATGGTACGGCACCAACCCGGACCCCCGCTTCTCCTCAATCTCCCG CTTCATGGCGCCGTCCTCGGGCATGAACATGGGCGGCATGGGCGGCCTGAGCTCCCTGGGGGACGTGAGCAAGAGCATG GCCCCGCTGCAGAGCACGCCGCGGAGGAAACGGAGGGTCCTGTTTTCCCAGGCCCAGGTTTACGAGCTGGAGAGACGTT TCAAGCAGCAGAAATACCTCTCCGCCCCCGAGAGGGAACATTTAGCCAGCATGATCCACCTCACCCCGACTCAGGTCAA AATCTGGTTCCAGAACCACCGCTACAAGATGAAGCGGCAGGCCAAAGACAAGGCTGCGCACGAGATGCAACAGGAGAAC GGCTCTTGCCAGCAGCAGCAGTCCCCCAGGAGGGTGGCGGTGCCGGTGCTGGTGAAGGATGGCAAGCCCTGCCAGGCGG GCTCCAACACCCCCACCGCAGCCATCCAGAGCCACCCGCAGCAGGCGGCCACGACCATCACGGTGGCCACCAATGGCAA CAGCCTCGGACAGCATCAGAGCCATCAGACAAACAGTGCGGGGCAGTCTCCCGACATGGGACAGCACTCGGCCAGCCCT TCCTCCCTGCAGAGCCAAGTCTCCAGTTTGTCTCACCTGAACTCTTCCACTTCTGACTATGGCACTGCCATGTCCTGCT CCACCTTGCTATACGGTAGGACCTGGTGAAAGGATTAAAGAAAGCGAAACGAAACAAGACAAAACACAAAAGAGAAAAA GAAAAAAGCAGATTTTCCCAGTCACACAGATCTCTGTCCTGTCCGAAGTGCTGGGTGCTTTCCCTTTGCTCTTTTAATA ATTTTCTTTCTTTTTTCCTTTATTTTTTTTTCCCTAAAGCGTTTTTTTTTTCTTTTTTTCTTCATTTTTTTTTTCTTTT TCGTTTTACTGACTGGTTCTCTGAGGACCCCCAAGAGAGAAAGGGAGAGAGTGACTTTTTGTTCCGTTCGCTGATACTG TGACGGTTTTGGGTCTTGCTTTTTTTCCCGTTTCCCCCCCAGCTTGCTGCGTGGGGTGTTAAACCAATTCTGACCAATA ACCACGGAGCAGTCTGCAGACAGGGGCCCGTCGGTAGGCACGGCCCGAAGGCTCGGATTGCAGATGGACCCTTTGCCAG CGTCTAGGACTTGCATGTAAATATAGAGATTGGGGAGGATGGGGTTGGGGTTTTTCCCAAAAACGCGGTCGCGGCACGC AGCCACAGAGCAACCTCCCCCACCCCCCCGGCTCCGCTCCCAGCCCCGTCCCAGCGATGGAGCCGGGGGGGCCACACGA GGCTTTGGCTTTTCTTTACGTTTGATGTGAACCTGTAGCTGTATAATGCTGTCAAAAGTTGGACTAAACCCATAGTTTT TAGTATCCTGTATATTTTGTTGTAAAAAGAAAGAAAAAACG
Comments Images provided by Susan Chapman
Entry 3 GEISHA Id NKX2-1.Garcia-Calero.2006 Data Source Publication Complete cDNA Template Probe show TTCTCCCCAGCCGCGGGATTCATGTCGATGAGCCCAAAGCATACGACTCCTTTCTCAGTGTCGGACATCTTGAGTCCTT GGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCAGTAACTTGGGGGCTCCCTTGTCAGCCTACAGACAGTCTCAGGT TTCGCAACCGGCCATGCAGCAACACCCCATGGGCCACAACGGAACGGTGACTGCCGCCTACCATATGACAGCGGCAGGG GTCCCCCAGCTCTCCCACGCTACGATGGGGGGCTACTGCAATGGGAACCTGGGCAACATGAGCGAGCTCCCGCCTTACC AGGACACCATGCGGAACAGCGCTTCGGCGACAGGATGGTACGGCACCAACCCGGACCCCCGCTTCTCCTCAATCTCCCG CTTCATGGCGCCGTCCTCGGGCATGAACATGGGCGGCATGGGCGGCCTGAGCTCCCTGGGGGACGTGAGCAAGAGCATG GCCCCGCTGCAGAGCACGCCGCGGAGGAAACGGAGGGTCCTGTTTTCCCAGGCCCAGGTTTACGAGCTGGAGAGACGTT TCAAGCAGCAGAAATACCTCTCCGCCCCCGAGAGGGAACATTTAGCCAGCATGATCCACCTCACCCCGACTCAGGTCAA AATCTGGTTCCAGAACCACCGCTACAAGATGAAGCGGCAGGCCAAAGACAAGGCTGCGCACGAGATGCAACAGGAGAAC GGCTCTTGCCAGCAGCAGCAGTCCCCCAGGAGGGTGGCGGTGCCGGTGCTGGTGAAGGATGGCAAGCCCTGCCAGGCGG GCTCCAACACCCCCACCGCAGCCATCCAGAGCCACCCGCAGCAGGCGGCCACGACCATCACGGTGGCCACCAATGGCAA CAGCCTCGGACAGCATCAGAGCCATCAGACAAACAGTGCGGGGCAGTCTCCCGACATGGGACAGCACTCGGCCAGCCCT TCCTCCCTGCAGAGCCAAGTCTCCAGTTTGTCTCACCTGAACTCTTCCACTTCTGACTATGGCACTGCCATGTCCTGCT CCACCTTGCTATACGGTAGGACCTGGTGAAAGGATTAAAGAAAGCGAAACGAAACAAGACAAAACACAAAAGAGAAAAA GAAAAAAGCAGATTTTCCCAGTCACACAGATCTCTGTCCTGTCCGAAGTGCTGGGTGCTTTCCCTTTGCTCTTTTAATA ATTTTCTTTCTTTTTTCCTTTATTTTTTTTTCCCTAAAGCGTTTTTTTTTTCTTTTTTTCTTCATTTTTTTTTTCTTTT TCGTTTTACTGACTGGTTCTCTGAGGACCCCCAAGAGAGAAAGGGAGAGAGTGACTTTTTGTTCCGTTCGCTGATACTG TGACGGTTTTGGGTCTTGCTTTTTTTCCCGTTTCCCCCCCAGCTTGCTGCGTGGGGTGTTAAACCAATTCTGACCAATA ACCACGGAGCAGTCTGCAGACAGGGGCCCGTCGGTAGGCACGGCCCGAAGGCTCGGATTGCAGATGGACCCTTTGCCAG CGTCTAGGACTTGCATGTAAATATAGAGATTGGGGAGGATGGGGTTGGGGTTTTTCCCAAAAACGCGGTCGCGGCACGC AGCCACAGAGCAACCTCCCCCACCCCCCCGGCTCCGCTCCCAGCCCCGTCCCAGCGATGGAGCCGGGGGGGCCACACGA GGCTTTGGCTTTTCTTTACGTTTGATGTGAACCTGTAGCTGTATAATGCTGTCAAAAGTTGGACTAAACCCATAGTTTT TAGTATCCTGTATATTTTGTTGTAAAAAGAAAGAAAAAACG
Citation García-Calero E, Garda AL, Marín F, Puelles L. Expression of Lrrn1 marks the prospective site of the zona limitans thalami in the early embryonic chicken diencephalon. Gene Expr Patterns. 2006 Oct;6(8):879-85. Epub 2006 Feb 28. Copyright Reprinted with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204616).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-17 stage 17
Diencephalon
Entry 4 GEISHA Id Nkx2.1.Maden.2007 Data Source Publication Complete cDNA Template Probe show TTCTCCCCAGCCGCGGGATTCATGTCGATGAGCCCAAAGCATACGACTCCTTTCTCAGTGTCGGACATCTTGAGTCCTT GGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCAGTAACTTGGGGGCTCCCTTGTCAGCCTACAGACAGTCTCAGGT TTCGCAACCGGCCATGCAGCAACACCCCATGGGCCACAACGGAACGGTGACTGCCGCCTACCATATGACAGCGGCAGGG GTCCCCCAGCTCTCCCACGCTACGATGGGGGGCTACTGCAATGGGAACCTGGGCAACATGAGCGAGCTCCCGCCTTACC AGGACACCATGCGGAACAGCGCTTCGGCGACAGGATGGTACGGCACCAACCCGGACCCCCGCTTCTCCTCAATCTCCCG CTTCATGGCGCCGTCCTCGGGCATGAACATGGGCGGCATGGGCGGCCTGAGCTCCCTGGGGGACGTGAGCAAGAGCATG GCCCCGCTGCAGAGCACGCCGCGGAGGAAACGGAGGGTCCTGTTTTCCCAGGCCCAGGTTTACGAGCTGGAGAGACGTT TCAAGCAGCAGAAATACCTCTCCGCCCCCGAGAGGGAACATTTAGCCAGCATGATCCACCTCACCCCGACTCAGGTCAA AATCTGGTTCCAGAACCACCGCTACAAGATGAAGCGGCAGGCCAAAGACAAGGCTGCGCACGAGATGCAACAGGAGAAC GGCTCTTGCCAGCAGCAGCAGTCCCCCAGGAGGGTGGCGGTGCCGGTGCTGGTGAAGGATGGCAAGCCCTGCCAGGCGG GCTCCAACACCCCCACCGCAGCCATCCAGAGCCACCCGCAGCAGGCGGCCACGACCATCACGGTGGCCACCAATGGCAA CAGCCTCGGACAGCATCAGAGCCATCAGACAAACAGTGCGGGGCAGTCTCCCGACATGGGACAGCACTCGGCCAGCCCT TCCTCCCTGCAGAGCCAAGTCTCCAGTTTGTCTCACCTGAACTCTTCCACTTCTGACTATGGCACTGCCATGTCCTGCT CCACCTTGCTATACGGTAGGACCTGGTGAAAGGATTAAAGAAAGCGAAACGAAACAAGACAAAACACAAAAGAGAAAAA GAAAAAAGCAGATTTTCCCAGTCACACAGATCTCTGTCCTGTCCGAAGTGCTGGGTGCTTTCCCTTTGCTCTTTTAATA ATTTTCTTTCTTTTTTCCTTTATTTTTTTTTCCCTAAAGCGTTTTTTTTTTCTTTTTTTCTTCATTTTTTTTTTCTTTT TCGTTTTACTGACTGGTTCTCTGAGGACCCCCAAGAGAGAAAGGGAGAGAGTGACTTTTTGTTCCGTTCGCTGATACTG TGACGGTTTTGGGTCTTGCTTTTTTTCCCGTTTCCCCCCCAGCTTGCTGCGTGGGGTGTTAAACCAATTCTGACCAATA ACCACGGAGCAGTCTGCAGACAGGGGCCCGTCGGTAGGCACGGCCCGAAGGCTCGGATTGCAGATGGACCCTTTGCCAG CGTCTAGGACTTGCATGTAAATATAGAGATTGGGGAGGATGGGGTTGGGGTTTTTCCCAAAAACGCGGTCGCGGCACGC AGCCACAGAGCAACCTCCCCCACCCCCCCGGCTCCGCTCCCAGCCCCGTCCCAGCGATGGAGCCGGGGGGGCCACACGA GGCTTTGGCTTTTCTTTACGTTTGATGTGAACCTGTAGCTGTATAATGCTGTCAAAAGTTGGACTAAACCCATAGTTTT TAGTATCCTGTATATTTTGTTGTAAAAAGAAAGAAAAAACG
Citation Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A. (2007). Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo. Int J Dev Biol. 2007;51(3):191-200. Copyright "Reprinted from Int. J. Dev. Biol., 51, Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A, Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo, 191-200, Copyright (2007), with permission from Copyright © 2007 UBC Press". All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204616). Images are quail, but sequence and map shown are chick.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 18
Diencephalon
Entry 5 GEISHA Id Nkx2.1.Chapman.2008 Data Source Direct Submission Complete cDNA Template Probe show TACAAGAAAGTGGGCATGGAGGGCAGTAACTTGGGGGCTCCCTTGTCAGCCTACAGACAGTCTCAGGTTTCGCAACCGG CCATGCAGCAACACCCCATGGGCCACAACGGAACGGTGACTGCCGCCTACCATATGACAGCGGCAGGGGTCCCCCAGCT CTCCCACGCGAGCATGGGGGGCTACTGCAATGGGAACCTGGGCAACATGAGCGAGCTCCCGCCTTACCAGGACACCATG CGGAACAGCGCTTCGGCGACAGGATGGTACGGCACCAACCCGGACCCCCGCTTCTCCTCAATCTCCCGCTTCATGGCGC CGTCCTCGGGCATGAACATGGGCGGCATGGGCGGCCTGAGCTCCCTGGGGGACGTGAGCAAGAGCATGGCCCCGCTGCA GAGCACGCCGCGGAGGAAACGGAGGGTCCTGTTTTCCCAGGCCCAGGTTTACGAGCTGGAGAGACGTTTCAAGCAGCAG AAATACCTCTCCGCCCCCGAGAGGGAACATTTAGCCAGCATGATCCACCTCACCCCGACTCAGGTCAAAATCTGGTTCC AGAACCACCGCTACAAGATGAAGCGGCAGGCCAAAGACAAGGCTGCGCAGCAGCAGATGCAACAGGAGAACGGCTCTTG CCAGCAGCAGCAGTCCCCCAGGAGGGTGGCGGTGCCGGTGCTGGTGAAGGATGGCAAGCCCTGCCAGGCGGGCTCCAAC ACCCCCACCGCAGCCATCCAGAGCCACCCGCAGCAGGCGGCCACGACCATCACGGTGGCCACCAATGGCAACAGCCTCG GACAGCATCAGAGCCATCAGACAAACAGTGCGGGGCAGTCTCCCGACATGGGACAGCACTCGGCCAGCCCTTCCTCCCT GCAGAGCCAAGTCTCCAGTTTGTCTCAGGTGAACTCTTCCACTTCTGACTATGGCACTGCCATGTCCTGCTCCACCTTG CTATACGGTAGGACCTGGTGAAAGGATTAAAGAAAGCGAAACGAAACAAGACAAAACAAAAAGAGAAAAAGAAAAAAGC AGATTTTCCCAGTCACACAGATCTCTGTCCTGTCCGAAGTGCTGGGTGCTTTCCTTTGCTCTTTTATTATTTTTCTTTC TTTTTTCTTTTATTTTTTT
Comments Images Provided by Susan Chapman
Entry 6 GEISHA Id NKX2.1.Halilagic.2007 Data Source Publication Complete cDNA Template Probe show TACAAGAAAGTGGGCATGGAGGGCAGTAACTTGGGGGCTCCCTTGTCAGCCTACAGACAGTCTCAGGTTTCGCAACCGG CCATGCAGCAACACCCCATGGGCCACAACGGAACGGTGACTGCCGCCTACCATATGACAGCGGCAGGGGTCCCCCAGCT CTCCCACGCGAGCATGGGGGGCTACTGCAATGGGAACCTGGGCAACATGAGCGAGCTCCCGCCTTACCAGGACACCATG CGGAACAGCGCTTCGGCGACAGGATGGTACGGCACCAACCCGGACCCCCGCTTCTCCTCAATCTCCCGCTTCATGGCGC CGTCCTCGGGCATGAACATGGGCGGCATGGGCGGCCTGAGCTCCCTGGGGGACGTGAGCAAGAGCATGGCCCCGCTGCA GAGCACGCCGCGGAGGAAACGGAGGGTCCTGTTTTCCCAGGCCCAGGTTTACGAGCTGGAGAGACGTTTCAAGCAGCAG AAATACCTCTCCGCCCCCGAGAGGGAACATTTAGCCAGCATGATCCACCTCACCCCGACTCAGGTCAAAATCTGGTTCC AGAACCACCGCTACAAGATGAAGCGGCAGGCCAAAGACAAGGCTGCGCAGCAGCAGATGCAACAGGAGAACGGCTCTTG CCAGCAGCAGCAGTCCCCCAGGAGGGTGGCGGTGCCGGTGCTGGTGAAGGATGGCAAGCCCTGCCAGGCGGGCTCCAAC ACCCCCACCGCAGCCATCCAGAGCCACCCGCAGCAGGCGGCCACGACCATCACGGTGGCCACCAATGGCAACAGCCTCG GACAGCATCAGAGCCATCAGACAAACAGTGCGGGGCAGTCTCCCGACATGGGACAGCACTCGGCCAGCCCTTCCTCCCT GCAGAGCCAAGTCTCCAGTTTGTCTCAGGTGAACTCTTCCACTTCTGACTATGGCACTGCCATGTCCTGCTCCACCTTG CTATACGGTAGGACCTGGTGAAAGGATTAAAGAAAGCGAAACGAAACAAGACAAAACAAAAAGAGAAAAAGAAAAAAGC AGATTTTCCCAGTCACACAGATCTCTGTCCTGTCCGAAGTGCTGGGTGCTTTCCTTTGCTCTTTTATTATTTTTCTTTC TTTTTTCTTTTATTTTTTT
Citation Halilagic A, Ribes V, Ghyselinck NB, Zile MH, Dollé P, Studer M. Retinoids control anterior and dorsal properties in the developing forebrain. Dev Bio 2007 Mar 1;303(1):244-58 Copyright Reprinted with permission from Elsevier.
Copyright © 2007 Elsevier B.V. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AF110995). Images are quail, but sequence and map shown are chick.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19 stage 19
stage 19
Telencephalon
Entry 7 GEISHA Id NKX2.1.Mercier.2012 Data Source Publication Complete cDNA Template Probe show TTCTCCCCAGCCGCGGGATTCATGTCGATGAGCCCAAAGCATACGACTCCTTTCTCAGTGTCGGACATCTTGAGTCCTT GGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCAGTAACTTGGGGGCTCCCTTGTCAGCCTACAGACAGTCTCAGGT TTCGCAACCGGCCATGCAGCAACACCCCATGGGCCACAACGGAACGGTGACTGCCGCCTACCATATGACAGCGGCAGGG GTCCCCCAGCTCTCCCACGCTACGATGGGGGGCTACTGCAATGGGAACCTGGGCAACATGAGCGAGCTCCCGCCTTACC AGGACACCATGCGGAACAGCGCTTCGGCGACAGGATGGTACGGCACCAACCCGGACCCCCGCTTCTCCTCAATCTCCCG CTTCATGGCGCCGTCCTCGGGCATGAACATGGGCGGCATGGGCGGCCTGAGCTCCCTGGGGGACGTGAGCAAGAGCATG GCCCCGCTGCAGAGCACGCCGCGGAGGAAACGGAGGGTCCTGTTTTCCCAGGCCCAGGTTTACGAGCTGGAGAGACGTT TCAAGCAGCAGAAATACCTCTCCGCCCCCGAGAGGGAACATTTAGCCAGCATGATCCACCTCACCCCGACTCAGGTCAA AATCTGGTTCCAGAACCACCGCTACAAGATGAAGCGGCAGGCCAAAGACAAGGCTGCGCACGAGATGCAACAGGAGAAC GGCTCTTGCCAGCAGCAGCAGTCCCCCAGGAGGGTGGCGGTGCCGGTGCTGGTGAAGGATGGCAAGCCCTGCCAGGCGG GCTCCAACACCCCCACCGCAGCCATCCAGAGCCACCCGCAGCAGGCGGCCACGACCATCACGGTGGCCACCAATGGCAA CAGCCTCGGACAGCATCAGAGCCATCAGACAAACAGTGCGGGGCAGTCTCCCGACATGGGACAGCACTCGGCCAGCCCT TCCTCCCTGCAGAGCCAAGTCTCCAGTTTGTCTCACCTGAACTCTTCCACTTCTGACTATGGCACTGCCATGTCCTGCT CCACCTTGCTATACGGTAGGACCTGGTGAAAGGATTAAAGAAAGCGAAACGAAACAAGACAAAACACAAAAGAGAAAAA GAAAAAAGCAGATTTTCCCAGTCACACAGATCTCTGTCCTGTCCGAAGTGCTGGGTGCTTTCCCTTTGCTCTTTTAATA ATTTTCTTTCTTTTTTCCTTTATTTTTTTTTCCCTAAAGCGTTTTTTTTTTCTTTTTTTCTTCATTTTTTTTTTCTTTT TCGTTTTACTGACTGGTTCTCTGAGGACCCCCAAGAGAGAAAGGGAGAGAGTGACTTTTTGTTCCGTTCGCTGATACTG TGACGGTTTTGGGTCTTGCTTTTTTTCCCGTTTCCCCCCCAGCTTGCTGCGTGGGGTGTTAAACCAATTCTGACCAATA ACCACGGAGCAGTCTGCAGACAGGGGCCCGTCGGTAGGCACGGCCCGAAGGCTCGGATTGCAGATGGACCCTTTGCCAG CGTCTAGGACTTGCATGTAAATATAGAGATTGGGGAGGATGGGGTTGGGGTTTTTCCCAAAAACGCGGTCGCGGCACGC AGCCACAGAGCAACCTCCCCCACCCCCCCGGCTCCGCTCCCAGCCCCGTCCCAGCGATGGAGCCGGGGGGGCCACACGA GGCTTTGGCTTTTCTTTACGTTTGATGTGAACCTGTAGCTGTATAATGCTGTCAAAAGTTGGACTAAACCCATAGTTTT TAGTATCCTGTATATTTTGTTGTAAAAAGAAAGAAAAAACG
Citation Mercier S, David V, Ratié L, Gicquel I, Odent S, Dupé V.. NODAL and SHH dose-dependent double inhibition promotes an HPE-like phenotype in chick embryos. Dis Model Mech. 2013 March; 6(2): 537543. Published online 2012 December 20. Copyright Copyright © 2013. Published by The Company of Biologists Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial Share Alike License (http://creativecommons.org/licenses/by-ncsa/ 3.0), which permits unrestricted non-commercial use, distribution and reproduction in any medium provided that the original work is properly cited and all further distributions of the work or adaptation are subject to the same Creative Commons License terms. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204616.1
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-12 stage 12
stage 12
Head Mesenchyme
Entry 8 GEISHA Id NKX2.1.Marcucio.2005 Data Source Publication Complete cDNA Template Probe show AGTTTATTTAAAACTCAAGTGTAACATTGATTTTAAGGCTGATGTGAGAAGTAAAACCAGCTGCCTTTTACAGCAAGCA GTTTGGTCAGTCCAACCTTAGCAGAGCTCAGCTCACTGACCCATCACAGCTCTACCTTTGAGCCCCTCAGCTGCAATGG CATGGCAGATTCACTTTCTGCACTCAAAGAACATGGGGCAAACAGGCTGTACCAACATGGGCAATCCGGCTGTAGCTAC ATGAAGCATCAAGGCTGTACCAGCATAGAGCAACCAGGCTGTCCCCATAGGGAGGGAGAGGAGCACAGCTCATAGACCA CAGGCTCAAGTGTATGAAGCAGATGGGGAAGAGGAATTCACAACAGGCAGTTTCTGAGTGAGTATCTTCTGTATATGCA GAACCAGGAGCTGGACTTGGAGATCCTTATGGGTCTCTTCCAATCTGGGATACTCCATGATTCTATGAATTGGTAGGAG CACAACTTGGAACTGTTTGTGCTACTCAAAGGGAACACCTGGAGCAGGCACAAAGAATCCAACAGCTCCTCTTGTCCCA GACTGATTGCAGATAGATACTTTCTGGGAGAGGGAGAAGAGCCCTGCTCAGACGCCATGTTACCTCTGTGGGTGGGTGT TGGAGAGGAGCTGCAGCAGCATGGAAGAAGCAAGTCCTTTCCTCTAGATCTGGAGCAACACATAACAAATAAGGCCCAA TATTCACGTAATGACAACAGTCTCCTGCGAGGACGACTGAGCAACCCCCCCACCCCCATCCCGTTTCTTTCTTTCGATT GTCTCGGCGCGTTGTCTCTATGGGATATTTCAGCAACAGAAGTCGACAGGGCAGGTGAGCGGAGGAACTCCTGCCCCAG CCAGGACTGCGCTTCCCTCGGTGGCCATCGGGGACTGCTGCGGGTCGACTCCGCCCGGAGGCCCGCGGGCTCCGGGCCG GCCCTGCGCTCCCTGGTACGGCTGGGAACCTCCCAGCGGCGGTGGAGCCCCAGCAACGGGGATGCAGTAAAATAAATAA ATGAATAAATAAATATTTTAAAAAGCCGAGCCAAGGGCATAGCGAGCCAGCTGGCACCTTCCTTCCGAATTAAAGCGTC CAGGAGACCTCAGAGCAAGGCACAGACTGGAGAGCAGGGTAGGATTTGGGGGGCAATGCCTCGGCTTCTCGGAGCCACT GAGAGCCAGGGAGCTTCTGGTGGATGCGCCCGAAGGCGCTGTGCCTGCGGAGATGCGCAGGGTGGCCCTGCCCGGTACC TCGAGGCCATGGGGACGGGCAGGGGCTGCTCGCAACCCTCCTGTAACTTGCCCTCGAGTTTTGCTGAGAAAACAAAAGC AAAGCAAACAATTCCCTTCCCCCAGCCCGAAAATAAAGCTCGGGCACCACCCGGGCTGGTCGAAAGGACTCCATTGTCG TTTTTAAATGAGATATCTTTGCAACTGCTCGCCCCTCCCCGAGCCAGCGGGGAGCCGCCCGTATCCCTGGAAGCGAGAG GTAGCGGGGAACAAAAGGCAGACTCCGAAGTGACACTGGAAATAAAAGGGAGCTTTGGTTACCCCCAGGGAAAGGTCGA GGGGGAAAGGTCGCCTTCCCGCCAGCGCACGTACTCCCGGCGGGCGCGGGGCGGCGGCCCCGGTCCAGAAGCAGCCTCG GGAGTGCGGGTGAGCGCGGAGCCGCCCCTCGGAGTGGCAGCACGGGTCCAAGGGCAGTGTCCGAATTAAACTCGAGGGC GGAGGGGGGCCGCGCCGCCTCTCCGCTCCCCCGGCAGCCGGGACGCTCTTCCCGCGTGGGGATTCGATTCCTCCCGCGG AGATCTGTTCCCCTCGAGCCGGGCATGGCGGCCGCACGGCACCCACCGGCGCCTGGCCGGGAGCCGCCGACGTCTCCAG AAGAGAGGGGAGGGTGCGGGCCGGGCTGGCAGGTGGCCCACCCGCGGTTCGGTTTCCTCTTGGCAATATGTGCAGGCGA CAGAGCTGAGGACCAGAAATGTGAGCGCAAATATGTGCTCGTGCACAGCCGCTCCCGAAGGTATGCACCCCGCCGTGCG TGTGTGCGTATCTGGGTATATGGACACAAACACGTAACTCCTGCGTTATCTGAAGTAATACACTGATAGCTGTATCTCA AAACCGATAAATAGATAGATCCTGGCAGGATTCTGTTTGTATGTATGTGTTGATACTAAGTACTGTCGTATGTATTTAC ATCTGTATGAACCGTGCTTATATTTTTAACTACGTAGCATATAACTTTTTGCAAAATGTCTCAACCACCTCCGGTGCAA CCGCGTTCTGACACGGCACCAAAGATGCTTTGGGGCCGTAACGAGTCCTGCACGCCTGTACTGACAGCACTGTGGCAGT CTATAGACGTGGCAGGAATCGCACGCAGAGTGGCAATGAGGCCACCGCGCAGATTGTTGATTATAACGGTGCCGGGGCA GGTGCCAACCCACATCCCGACACGAGGCTCTCGGCGGCCCTCCGTGCCCGCAGCCACCGCCCGGGGCAGCGAAGAGGCG CCGGGCCTAGGCGTGCCACTGGGTCCGGGCACGGGGCCCCCGCCCGCCCCGGCGGCCTCGGAGCCCGGCCCTGGCACCT CACTGCTGGCCCCTCCCTGGCCCTCTCGGCCGGGAACGGCCCGGCAGAGGAAAAGCCGGGGGTCGGAGCATCGGGTCAG AAGAGTTCGGGCGCCAGCCGGGAAGTGGTTCAGGAGGGCAAAGCCTCGCGAGTGGGCCCTGCGTGCGAAATGCTCCACG CCCTGAGCAGCTGGAGGAGCAACTGGGCGTGCGCTGCGGAGGGCCGCCGAATCATGTCGATGAGCCCAAAGCATACGAC TCCTTTCTCAGTGTCTGACATCTTGAGTCCTTTGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCAGTAACTTGGGG GCTCCCTTGTCAGCCTACAGACAGTCTCAGGTTTCGCAACCGGCCATGCAGCAACACCCCATGGGCCACAACGGAACGG TGACTGCCGCCTACCATATGACAGCGGCAGGGGTCCCCCAGCTCTCCCACGCTACGATGGGGGGCTACTGCAATGGGAA CCTGGGCAACATGAGCGAGCTCCCGCCTTACCAGGACACCATGCGGAACAGCGCTTCGGCGACAGGATGGTACGGCACC AACCCGGACCCCCGCTTCTCCTCAATCTCCCGCTTCATGGCGCCGTCCTCGGGCATGAACATGGGCGGCATGGGCGGCC TGAGCTCCCTGGGGGACGTGAGCAAGAGCATGGCCCCGCTGCAGAGCACGCCGCGGAGGAAACGGAGGGTCCTGTTTTC CCAGGCCCAGGTTTACGAGCTGGAGAGACGTTTCAAGCAGCAGAAATACCTCTCCGCCCCCGAGAGGGAACATTTAGCC AGCATGATCCACCTCACCCCGACTCAGGTCAAAATCTGGTTCCAGAACCACCGCTACAAGATGAAGCGGCAGGCCAAAG ACAAGGCTGCGCAGCAGCAGATGCAACAGGAGAACGGCTCTTGCCAGCAGCAGCAGTCCCCCAGGAGGGTGGCGGTGCC GGTGCTGGTGAAGGATGGCAAGCCCTGCCAGGCGGGCTCCAACACCCCCACCGCAGCCATCCAGAGCCACCCGCAGCAG GCGGCCACGACCATCACGGTGGCCACCAATGGCAACAGCCTCGGACAGCATCAGAGCCATCAGACAAACAGTGCGGGGC AGTCTCCCGACATGGGACAGCACTCGGCCAGCCCTTCCTCCCTGCAGAGCCAAGTCTCCAGTTTGTCTCACCTGAACTC TTCCACTTCTGACTATGGCACTGCCATGTCCTGCTCCACCTTGCTATACGGTAGGACCTGGTGAAAGGATTAAAGAAAG CGAAACGAAACAAGACAAAACAAAAAGAGAAAAAGAAAAAAGCAGATTTTCCCAGTCACACAGATCTCTGTCCTGTCCG AAGTGCTGGGTGCTTTCCTTTGCTCTTTTATTATTTTTCTTTCTTTTTTCTTTTATTTTTTTTTCCCTAAAGCGGTTTT TTTTTTCTTTTTTTCTTCATTTTTTTTTTCTTTTTCGTTTTACTGACTGGTTCTCTGAGGACCCCCAAGAGAGAAAGGG AGAGAGTGACTTTTTGTTCCGTTCGCTGATACTGTGACGGTTTTGGGTCTTGCTTTTTTTCCCGTTTCCCCCCAGCTTG CTGCGTGGGGTGTTAAACCAATTCTGACCAATAACCACGGAGCAGTCTGCAGACAGGGGCCCGTCGGTAGGCACGGCCC GAAGGCTCGGATTGCAGATGGACCCTTTGCCAGCGTCTAGGACTTGCATGTAAATATAGAGATTGGGGAGGATGGGGTT GGGGTTTTTCCCAAAAACGCGGTCGCGGCACGCAGCCACAGAGCAACCTCCCCCACCCCCCCGGCTCCGCTCCCAGCCC CGTCCCAGCGATGGAGCCGGGGGGGCCACACGAGGCTTTGGCTTTTCTTTACGTTTGATGTGAACCTGTAGCTGTATAA TGCTGTCAAAAGTTGGACTAAACCCATAGTTTTTAGTATCCTGTATATTTTGTTGTAAAAAGAAAGAAAAAAAAAATAC AATCAACCAAACCAACCCCACCCCCCCTTTTTTATGGACACCGATCGTCCCCTCGTAAACCCTCCGGCAGTTTGTTCTT TGCGCACGCCGCCTTTTCCTGTTGTAACTTATGTAGATATTTGGCTTAAATATAGTTCCTAAGAAGCTTCTAATAAATT ATACACATTGCGAATATTCTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTCCCTCGGCTCCGTCCTGACCCTCCTTTCC CCCATCTCTATTTTTTTTTTTTTTTTTTTTTTTGCGTTGGATGGAAACCGGACCGGGACGCTGCGGGCTCCGGGACGCC CCCGCTCGGGGGGACCGCGCCGGGAGGCGGCGGAGCGCGGGGCCGAGCGCCGAGTGAACGCGCGGAGAGAGAGCGCGGA GCTCCCGGGCCGCACGGGATGGGGTCGGGCCCGAACTCATTGCTGCTACCGGGGGGGAGAGAGGGGGGGGGCTCGGTCC TTTTTGCCGGAGAAAGCGAAGTGCTCCGGGAGGAGAGAGCCAAATGCCAAAGGCGCGGAGGAGAAAGAAGGGAGAAGTC TGATGCCACTAGAAACAAACTAACGACGAACGTGCTGGCAGTGTAGGACGTGCGGCCGTTTTAAAGAGCGTCCAGTTTA AATATCTTGTTAAAAAAGAAAAGAGAAAAAGAAAAAAGAGAGAAAGAAAGGAAAGAAAAAAAAAAGAAAGAAAAAGAAC CATTTCTACCAGGTTTTCCTATGTACTTGTATTTTAAGGGAAGTACAGTCACCTTATTTATAATCCAAATAAAAAGATA GTTTATTGTGTACGAATTGTAGTTTGGATTAACTTTCTTTAAAGGGCTGCACTGAATTTCCCACCCGCACACACCTCCC AGGCAGACAGACGGCCGTGCAGCTCTCCTGTAAGCGCCAAGCCCAGTCTCCAGGCGGGGGGTTAGGGGCAGGCTGCGGC TCAGCGTAGCACAGGTTGGGCTTTCGTGTTTCTTTTTCTTTCTTTTCTTTCTTTCTTTCTTTTTTTTTCTTTCTTTTCC CCCTCCCCTCTCTCTCTTCTTTCTCTGTTTACTTTTTTTTTCTTTTCTTTTTATTTTTTCTCTCCCTCCCTCTCTCTCC TTTAAGTCCCCTTTGTTTTCTTCTTTATTTTCATAGCGCTTTGGGAAGTGAGTAAAGAAGCAGATGCAGAAGGCGTGGG TGTGGGTGTGTGCGTGTGCGCCCGGCCGGGAAACCGAGGTGCCTTCGGTTGTGAGATAAATCTGATGGGTAATGCGAGC AATTAGGTATTAACCCCATTATAAATGTATAAAACATATCCAGTGAGGCAGCTCATATTGGACAATCCCGAACTTCATA TCGTTCTTAATGTCTCGGGTCCCAAATATCCCCTTTGTGAGTGTAACAAAAGAAGCCCCCCATCCCGAAGGCTCTCTCA GTATTACCTTTGCATTTGCTGCTCGGTTTCGGTTTTTTTTTTTCTCTTTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTC TTCCCTCCAGACCCCCCCGGTTAAACCACGGAAGCGACTCGCAGTCATTGAAAGCTCTCTGCATTACAGAGGTATTATG AAACGCTCATATTTTTGAGGAGAAGGCAAGCAGATTGCCGGAATGAAAACAAACCAACCTCCAGCTTAAGTAGCAGCTT TCGAAAGCCCTTTATTGATATAAGATAACTGGCGTTACTCGGACACCAAGTGCCGGTTTGGATGGAGAATAAGGGAAAT AGACAGAATGAATAAAAAGATTATCGGATTCTTTCTGCCCCCCTCGTCCCCCGTCGTCGTCGTCCCCCCTCCGCCGCCC CCCCCACTCCTGATTTCTAACTAAAGAACATCACGTGTGTTAGCAGGAATTTCGAGACCTTTCATTCTTTATATTGCGT CCCGCTTTACACAGGGGCAGTCTCAACTAACCCAAAGAATATTCCTTTTTCTTTCTTTTTTTTTCCCCCCCTTTCTCTA CCGAGCCTACGCTCCTTTCGGACACATGGGTTAAACTCAGCCCCTCGGTGCCCGTAGTGCTGCTCAAAGGGAGAAGCGC CGGGGATCCCCGGAGCGTTCCACGGCGCTGCGAGGGGAGCGGGACCGGGGGGCACTCGGCTGATTCTTCAACCGGGGGT TGGCCGGACTGGATGATCTCGGTGGTCTTTTCCAACCTAAACGATGCTGTGATTCTGGCGGAGATAGCGCACGAGGCCG AGGTGGACACTGCTGTGCTGAAGTCGACATTTCCCCTTCAGATGTAATGAATATGTGCATCCTTTCAGACGTTCACAGC TGAAGAGCATTGAAAGGCCTTAAAACAGCCGAGAAACTCCTTCCGTCCCTGGAAAAAAACTGGTGGGGCTGCCATGTGC GGCAGACACCCAGCCGGTGACTTCTCATTACAGACCTCGGGGGAAATAAATGCATTTTATTGTGTCTCGGCAACCTCAT AAACACATTTTTGGTGGTGGGTGTAATTACTGTAATGGATTATTATGTACACTGACTTATCTTTCTTAAACTAGATTTA GTTTCGATTAAATAAACTCGTTTCCACTTTGTCTGA
Citation Marcucio RS, Cordero DR, Hu D, Helms JA. Molecular interactions coordinating the development of the forebrain and face. Dev Biol. 2005 Aug 1;284(1):48-61. Copyright Copyright © 2005 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (XM_015287273.2).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-22 stage 22
Diencephalon Eye all
Entry 9 GEISHA Id NKX2.1.Ratie.2013 Data Source Publication Complete cDNA Template Probe show TTCTCCCCAGCCGCGGGATTCATGTCGATGAGCCCAAAGCATACGACTCCTTTCTCAGTGTCGGACATCTTGAGTCCTT GGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCAGTAACTTGGGGGCTCCCTTGTCAGCCTACAGACAGTCTCAGGT TTCGCAACCGGCCATGCAGCAACACCCCATGGGCCACAACGGAACGGTGACTGCCGCCTACCATATGACAGCGGCAGGG GTCCCCCAGCTCTCCCACGCTACGATGGGGGGCTACTGCAATGGGAACCTGGGCAACATGAGCGAGCTCCCGCCTTACC AGGACACCATGCGGAACAGCGCTTCGGCGACAGGATGGTACGGCACCAACCCGGACCCCCGCTTCTCCTCAATCTCCCG CTTCATGGCGCCGTCCTCGGGCATGAACATGGGCGGCATGGGCGGCCTGAGCTCCCTGGGGGACGTGAGCAAGAGCATG GCCCCGCTGCAGAGCACGCCGCGGAGGAAACGGAGGGTCCTGTTTTCCCAGGCCCAGGTTTACGAGCTGGAGAGACGTT TCAAGCAGCAGAAATACCTCTCCGCCCCCGAGAGGGAACATTTAGCCAGCATGATCCACCTCACCCCGACTCAGGTCAA AATCTGGTTCCAGAACCACCGCTACAAGATGAAGCGGCAGGCCAAAGACAAGGCTGCGCACGAGATGCAACAGGAGAAC GGCTCTTGCCAGCAGCAGCAGTCCCCCAGGAGGGTGGCGGTGCCGGTGCTGGTGAAGGATGGCAAGCCCTGCCAGGCGG GCTCCAACACCCCCACCGCAGCCATCCAGAGCCACCCGCAGCAGGCGGCCACGACCATCACGGTGGCCACCAATGGCAA CAGCCTCGGACAGCATCAGAGCCATCAGACAAACAGTGCGGGGCAGTCTCCCGACATGGGACAGCACTCGGCCAGCCCT TCCTCCCTGCAGAGCCAAGTCTCCAGTTTGTCTCACCTGAACTCTTCCACTTCTGACTATGGCACTGCCATGTCCTGCT CCACCTTGCTATACGGTAGGACCTGGTGAAAGGATTAAAGAAAGCGAAACGAAACAAGACAAAACACAAAAGAGAAAAA GAAAAAAGCAGATTTTCCCAGTCACACAGATCTCTGTCCTGTCCGAAGTGCTGGGTGCTTTCCCTTTGCTCTTTTAATA ATTTTCTTTCTTTTTTCCTTTATTTTTTTTTCCCTAAAGCGTTTTTTTTTTCTTTTTTTCTTCATTTTTTTTTTCTTTT TCGTTTTACTGACTGGTTCTCTGAGGACCCCCAAGAGAGAAAGGGAGAGAGTGACTTTTTGTTCCGTTCGCTGATACTG TGACGGTTTTGGGTCTTGCTTTTTTTCCCGTTTCCCCCCCAGCTTGCTGCGTGGGGTGTTAAACCAATTCTGACCAATA ACCACGGAGCAGTCTGCAGACAGGGGCCCGTCGGTAGGCACGGCCCGAAGGCTCGGATTGCAGATGGACCCTTTGCCAG CGTCTAGGACTTGCATGTAAATATAGAGATTGGGGAGGATGGGGTTGGGGTTTTTCCCAAAAACGCGGTCGCGGCACGC AGCCACAGAGCAACCTCCCCCACCCCCCCGGCTCCGCTCCCAGCCCCGTCCCAGCGATGGAGCCGGGGGGGCCACACGA GGCTTTGGCTTTTCTTTACGTTTGATGTGAACCTGTAGCTGTATAATGCTGTCAAAAGTTGGACTAAACCCATAGTTTT TAGTATCCTGTATATTTTGTTGTAAAAAGAAAGAAAAAACG
Citation Leslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25. Copyright © 2013 Ratié et al.; licensee BioMed Central Ltd. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204616.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13 stage 13
stage 13
stage 13
stage 13
stage 13
stage 13
stage 13
Eye Hypothalamus
Mouse Frog Fruit Fly Zebra Finch Zebrafish