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NANOG Nanog homeobox Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol NANOG Official Full Name Nanog homeobox CGNC ID 59260 also known as homeobox protein NANOG|cNanog|homeobox transcription factor Nanog gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Entrez Gene Ensembl Gene Genetic Phenotypes MOD Fruit Fly Human Mouse Xenopus Zebrafish
Gene Ontology Molecular Function Biological Process Cellular Component
Links to other databases
Entry 1 GEISHA Id ChEST181g6 Data Source GEISHA ISH Analysis Forward cDNA Template Probe show GGCTAGCACGACAGCTTGCACGCATAAGATACCTACAGCTTCCAGAGCACCTCTGATAGTATCACACAGTTCTCGAGCT CTCCTGTACGGCATCAGTACCAGGCCCCTTGGCATACCCTGGGGACCCAGAATGGTTATGAGACTTAGACCTAAGTATT GTTCTTTCCCTTCCTCCTGTTTTGTCTCATGGGGTTTCTAGGGTCTTGACTCATAGATCCAATTTCTATTCCTTTCTTT TGCCCCTCCTTCTCAATTCCTGCTTTAACTGTTGGTGGGGTCTAGCACCCTGCTATTTCAGGTTTCTTTTCTCTTTAAA GGCATCTCTGTGCATAGCTAACCCTTTGCAAGGGTGTTCTGTGTGTAGACAGGTGAAATTGCATTTATGGAGGGGAATG TGCAATGCCACAGTCAGGAGCAGCAGAGATGGCGAAGATCCATGTTTACTGTCCAAGACCCACTCCGCTGCCTCTTTTG CGGATGATTCTCTGATCTTCACCATGTGTCTTGCAGCCAAAACTTAGAGAAAACTTTTAATTTCTGCAAGAAATACCCT ATTTGTAGCCCAGAGTCTTTCCTGCTGTCTTGCCTTTTTCTGCTGTGACCTCAGTCATCTAGTAAATTCATCTGGGTCC TTTAAATCTCTGAACTGAAAGCCT
Comments No specific expression detected: stages 10, 12 negative, stages 14-21 had widespread, low-level expression.
no images
Entry 2 GEISHA Id NANOG.UApcr Data Source GEISHA ISH Analysis Forward cDNA Template Primer CAGCAGCAGACCTCTCCTTGAC Reverse cDNA Template Primer AATTAACCCTCACTAAAGCCAAAGAAGCCCTCATCCTCC cDNA Template Length 595 Forward cDNA Template Probe show ACGGATACGGCCCTGCCCATTCCCATAAGTCTGGCCACTGCTGTAAGCCTGGTGTCCACTGGTAACAGCCTGAAGGTTT CTGTTGGCAACAACAGGGAAGCCCTGGTGAAATGTAGGGGTCATATCCAGATACGCAGCTTGATGAAACCCATTCTGTG GTAGATAAATCCCTTTATCCACCCACTGACTCTCTTTCTGGCAACGTTTAAACTTCATTCGTTGGTTCTGAAACCACGT CTTCACCTGCTTGTAGGTGAGCCCCAGAGCAGCAGCCAGCTCCCGGATCTGATGGGGGCTGAGGTACTTCTGGCTCTGA AACCGCTGGTGCAGGGTCTGCAGCTGCTCCTGGGAGAAAGCTGTGCGGCTCTTGGCCTTCCTTGTCCCACTCTCACCTT TATCCTTAACCTTCTGAAAAGTGGGGCGGTGAGATGGGTGGTCTGCAGTAGGGCTAGTGGCAGAGTCTGGGGTATACTG AATGAGTGTCCCAGAGCTGGAAGAAGCTGGAGAGGCATCTGGGTGGCAGGGCGTTTTCTGCTCTGTGGTCAAGGAGAGG TCTGCTGATGANNNACCNCCCATCTCACNNCGCCCCACTTTTCAGAGGTTAAGGATAAAGGTGAGAGTGGGACAGGAAA GCCAAGAGCCGCACGCTTTCTCCAGGAGCGCTGCTGACCCTGCCCCACGTTTCATATCAGAAGTACTACTCCCCCATCC AATACCGGAATTGCGAGTGTCCTTGGTTCTCTTCAACTAGGTTAAAACTAGGTTTATAACTGCTTTG
Entry 3 GEISHA Id Nanog.Cañón.2006 Data Source Publication Forward cDNA Template Probe show CTTGCAGGCAGAAGATACCTACAGCTTCCAGAGCACCTCTGATAGTATCACACAGTTCTCGAGCTCTCCTGTACGGCAT CAGTACCAGGCCCCTTGGCATACCCTGGGGACCCAGAATGGTTATGAGACTTAGACCTAAGTATGTTCTTTCCCTTCCT CCTGTTTNGTCTCATGGGGTTTCTAGGGTCTTGACTCATAGATCCAATTTCTATTCCTTTCTTTGCCCCTCCTTCTCAA TTCCTGCTTTAACTGTTGGTGGGGTCTAGCACCCTGCTATTTCAGGTTTCTTTTCTCTTTAAAGGCATCTCTGTGCATA GCTAACCCTTTGCAAGGGTGTTCTGTGTGTAGACAGGTGAAATTGCATTTATGGAGGGGAATGTGCAATGCCACAGTCA GGAGCAGCAGAGATGGCGAAGATCCATGTTTACTGTCCAAGACCCACTCCGCTGCCTCTTTTGCGGATGATTCTCTGAT CTTCACCATGTGTCTTGCAGCCAAAACTTAGAGAAAACTTTTAATTTCTGCAAGAAATACCCTATTTGTAGCCCAGAGT CTTTCCTGCTGTCTTGCCTTTTTCTGCTGTGACCTCAGTCATCTAGTAAATTCATCTGGGTCCTTTAAATCTCTGAACT GAAAGCCT
Citation Cañón S, Herranz C, Manzanares M. (2006) Germ cell restricted expression of chick Nanog. Dev Dyn. 2006 Oct;235(10):2889-94. Copyright Copyright © 2006 Wiley-Liss, Inc. Comments Authors state: Clone ChEST181g6 (accession no. BU454887) was selected for generating a digoxigenin-labeled riboprobe, as further sequencing of this clone showed that it contained a 625-bp fragment that include the last residues of the coding sequence of Nanog.
Entry 4 GEISHA Id Nanog.Lavial.2007 Data Source Publication Complete cDNA Template Probe show CAGCAGACCTCTCCTTGACCACAGAGCAGAAAACGCCCTGCCACCCAGATGCCTCTCCAGCTTCTTCCAGCTCTGGGAC ACTCATTCAGTATACCCCAGACTCTGCCACTAGCCCTACTGCAGACCACCCATCTCACCGCCCCACTTTTCAGAAGGTT AAGGATAAAGGTGAGAGTGGGACAAGGAA
Citation Lavial F, Acloque H, Bertocchini F, Macleod DJ, Boast S, Bachelard E, Montillet G, Thenot S, Sang HM, Stern CD, Samarut J, Pain B (2007). The Oct4 homologue PouV and Nanog regulate pluripotency in chicken embryonic stem cells. Development. 2007 Oct;134(19):3549-63. Copyright Published by The Company of Biologists 2007 Comments According to the authors, "Oligonucleotides (Proligo) were designed using Primer 3 software
(http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi) and are listed in Table 1." The sequence below was obtained from NCBI (DQ867025) using the information provided.
Entry 5 Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 1-3 stage 3
stage 3
stage 3
Area Pellucida 4-6 stage 4
stage 4
stage 4
stage 5
stage 5
stage 5
stage 6
Area Opaca Area Pellucida all
Entry 6 GEISHA Id NANOG.Trevers.2023 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show GTATCTCCGTGCAGTAGGCGCGTATGCAACCAGCTCACCGCCAGCAACGGCTGGAGGTGCCGTCCCGACCATGAGCGCT CACCTGGCCATGCCGTCCTACGGCTCTGTTAGGTGCGGACACTACTACTGGCCCTCTCCGGGCAGCATGGATAGCGCGT CTGCCGCGGAAGCTCCAGCAGCAGACCTCTCCTTGACCACAGAGCAGAAAACGCCCTGCCACCCAGATGCCTCTCCAGC TTCTTCCAGCTCTGGGACACTCATTCAGTATACCCCAGACTCTGCCACTAGCCCTACTGCAGACCACCCATCTCACCGC CCCACTTTTCAGAAGGTTAAGGATAAAGGTGAGAGTGGGACAAGGAAGGCCAAGAGCCGCACAGCTTTCTCCCAGGAGC AGCTGCAGACCCTGCACCAGCGGTTTCAGAGCCAGAAGTACCTCAGCCCCCATCAGATCCGGGAGCTGGCTGCTGCTCT GGGGCTCACCTACAAGCAGGTGAAGACGTGGTTTCAGAACCAACGAATGAAGTTTAAACGTTGCCAGAAAGAGAGTCAG TGGGTGGATAAAGGGATTTATCTACCACAGAATGGGTTTCATCAAGCTGCGTATCTGGATATGACCCCTACATTTCACC AGGGCTTCCCTGTTGTTGCCAACAGAAACCTTCAGGCTGTGACCAGTGCACACCAGGCTTACAGCAGTGGCCAGACTTA TGGGAATGGGCAGGGCCTGTATCCGTTCATGGCTGTGGAGGATGAGGGCTTCTTTGGAAAAGGTGGAACAAGCTGCAAC ACCCAGCAGGCCATGGGTTTATTAAGTCAACAGATGAACTTCTATCATGGCTACTCTACCAATGTGGATTATGACAGCT TGCAGGCAGAAGATACCTACAGCTTCCAGAGCACCTCTGATAGTATCACACAGTTCTCGAGCTCTCCTGTACGGCATCA GTACCAGGCCCCTTGGCATACCCTGGGGACCCAGAATGGTTATGAGACTTAGACCTAAGTATTGTTCTTTCCCTTCCTC CTGTTTTGTCTCATGGGGTTTCTAGGGTCTTGACTCATAGATCCAATTTCTATTCCTTTCTTTTGCCCCTCCTTCTCAA TTCCTGCTTTAACTGTTGGTGGGGTCTAGCACCCTGCTATTTCAGGTTTCTTTTCTCTTTAAAGGCATCTCTGTGCATA GCTAACCCTTTGCAAGGGTGTTCTGTGTGTAGACAGGTGAAATTGCATTTATGGAGGGGAATGTGCAATGCCACAGTCA GGAGCAGCAGAGATGGCGAAGATCCATGTTTACTGTCCAAGACCCACTCCGCTGCCTCTTTTGCGGATGATTCTCTGAT CTTCACCATGTGTCTTGCAGCCAAAACTTAGAGAAAACTTTTAATTTCTGCAAGAAATACCCTATTTGTAGCCCAGAGT CTTTCCTGCTGTCTTGCCTTTTTCTGCTGTGACCTCAGTCATCTAGTAAATTCATCTGGGTCCTTTAAATCTCTGAACT GAAAGCCTAAATATCATCTTATCTTGGATGGTTTGATCCAGTTACTCTGTCTTTCCACCTGGAGAGGTCAGTACCTGCC TACCCTTTGTCTCCTGCCTTCCTGTGTTCGTAAGGCTGTTTAAAGAACAGGAGGAGAAAAGAGAAGTTGGAGAGAATGT TGTCTGTACCTGATGTGGAAATGTTTAAAACGATTTCCAAAGCTGATGGATGCTTTGTGTCTGTCAAATAACTGACGAT CAATCTCTGGAACTATTTGTAACAATTTAAATCTTGTCTTCCTTAATCTCTCTGCTGAGAAAATGATAGCTTGTCCCAA TCTGAATATTGCAGCAGATGGTACACCAAAATGCCATTGCTGGAAATGTGAGTAGTGGCTATATTTAGCCATCTTCTGA GTGTTGAGAAATAGTTTGCTTATCTGTATATCAGGATTCACTAGCAATTTGTGAACACAGTGTCAATACATGGGCAGCT TTCTCAGAGGTAGAGAGTACGCAAAGGTAAAGGGCTTGGTTACATTAAAGATTGTTTCATGGTTAGTTATTCTGAAACC TGAATGTCAGGGAGGAAAACCCTGTTGGATAGTAGTGGAGTTGGCATCCAAGGGGCTAGAGCAGGATGTTTCCCTAATC TCTTGTCTAATCTCAGTTTTAAGATAGCAAGCTAATGTTTTTATCCCATCTCCAGTGCTTAGTTGGATCTTTTCCATAT TCTCCTGCTGAAAGGTATACCAGCTACCTCTTGGGGTAGCCATTCTGGAGGAGATGGCAAGTTCAGAGAAACCTAGATA GACAATCAGAGGATGAAAATGGCAATTAATGTTTTGATTTTCTTTTTCAAAAGAACTGAATCATCCCTTTCAGGATGGA GATTACTAGAAGTCAGCAACTGCCTGTGCAAAACTGGATCTTTAAGTAGTGAGATTGGAGAGTCCAGTCTGCCACTGCC CAAGAATACACAATGTCTTGAGCTGGCAAGAGCAAATAAATGATAAAAGCATAAATAATTTTTTTCACTAATGCGCAGT TTGTGCTGTAATTCTGTATTTTAATGTATGTGCAAGGATTATGTGTCACAGTTGAGCTTTCACTACAAAGATGGATGCT TGCTGCTGTTCTCGCAGTGATCATGGCCATGTTTTATGGCATACATGTGTTGTCTACTGCTTTACTTCTGCTTGATGTT TATATAGACTCGCTTGAATTGAAAATAAATGACTTTATTTTAATGCTGAAA
Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001146142).
Mouse Frog Fruit Fly Zebra Finch Zebrafish