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TCF15 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol TCF15 Official Full Name transcription factor 15 CGNC ID 20222 also known as transcription factor 15|TCF-15|bHLH-EC2 protein|paraxis|protein bHLH-EC2|transcription factor 15 (basic helix-loop-helix) gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Links to other databases
Entry 1 GEISHA Id Paraxis.Stockdale.2000 Data Source Publication Complete cDNA Template Probe show GATTCGGCACGAGATCTCATTCTTCAAGGTTTTAGCAATAGATGTATGGATAGCACCACACAGACCTCGATCAGAGGAC
Citation Stockdale FE, Nikovits W Jr, Christ B. Molecular and cellular biology of avian somite development.Dev Dyn. 2000 Nov;219(3):304-21. Copyright Copyright © 2000 Wiley-Liss, Inc. Comments Probable probe, exact probe sequence not available from publication.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13
stage 13
Paraxial Mesoderm Somites
Entry 2 GEISHA Id Paraxis.Noden.2006 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation Noden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review. Copyright Copyright © 2006 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946). Paraxis gene not annotated in Ensembl genebuild.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 14
stage 16
stage 18
Head Mesenchyme Somites
Entry 3 Entry 4 GEISHA Id Paraxis.Ahmed.2006 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation Ahmed MU, Cheng L, Dietrich S. Establishment of the epaxial-hypaxial boundary in the avian myotome. Dev Dyn. 2006 Jul;235(7):1884-94. Copyright Copyright © 2006 Wiley-Liss, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946).Paraxis gene not annotated in Ensembl genome build
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 22
stage 22
stage 24
Dermatome Myotome 25 stage 25
Dermatome Myotome
Entry 5 GEISHA Id Paraxis.Cheng.2004 Data Source Publication Complete cDNA Template Probe show GATTCGGCACGAGATCTCATTCTTCAAGGTTTTAGCAATAGATGTATGGATAGCACCACACAGACCTCGATCAGAGGAC
Citation Cheng L, Alvares LE, Ahmed MU, El-Hanfy AS, Dietrich S. The epaxial-hypaxial subdivision of the avian somite. Dev Biol. 2004 Oct 15;274(2):348-69. Copyright Reprinted from Developmental Biology, Volume 274, Issue 2, Louise Cheng, Lúcia E. Alvares, Mohi U. Ahmend, Amira S. El-Hanfy, and Susanne Dietrich, The epaxial-hypaxial subdivision of the avian somite, Pages 348-369, Copyright 2004, with permission from Elsevier.
Copyright © 2004 Elsevier B.V. All rights reserved. Comments Authors said probe came from (oic et al., 1997) who indicate a full length cDNA probe was used: Genbank Acc# U76665.
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Entry 6 GEISHA Id Paraxis.James.2005 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation James RG, Schultheiss TM. Bmp signaling promotes intermediate mesoderm gene expression in a dose-dependent, cell-autonomous and translation-dependent manner. Dev Biol. 2005 Dec 1;288(1):113-25. Epub 2005 Oct 21. Copyright Copyright © 2005 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-11 stage 11
Somites
Entry 7 GEISHA Id Paraxis.Wilm.2004 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation Wilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89. Copyright Copyright © 2004 Elsevier Inc. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-11 stage 11
Somites
Entry 8 GEISHA Id MESO1.Tenin.2010 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation Tenin G, Wright D, Ferjentsik Z, Bone R, McGrew MJ, Maroto M. The chick somitogenesis oscillator is arrested before all paraxial mesoderm is segmented into somites. BMC Dev Biol. 2010 Feb 25;10:24. Copyright authors retain copyright of their article, and grant any third party the right to use reproduce and disseminate the article, subject to the terms of BMC Developmental Biology copyright and license agreement Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204946.2 )
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 24
Tail 25 stage 25
stage 25
Tail
Entry 9 GEISHA Id Paraxis.Delfini.2000 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation Delfini MC, Duprez D. Paraxis is expressed in myoblasts during their migration and proliferation in the chick limb bud. Mech Dev. 2000 Sep;96(2):247-51. Copyright Copyright © 2000 Elsevier Science Ireland Ltd. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946). Paraxis is also known as TCF15 in NCBI.
Entry 10 GEISHA Id Paraxis.Barnes.1997 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation Barnes GL, Alexander PG, Hsu CW, Mariani BD, Tuan RS. Cloning and characterization of chicken Paraxis: a regulator of paraxial mesoderm development and somite formation. Dev Biol 1997 Sep 1;189(1):95-111. Copyright Copyright © 1997 Academic Press. Comments Authors indicated the probe was synthesized from the full-length chicken Paraxis cDNA. Above sequence is obtained from NCBI Accession number NM_204946.2.
Entry 11 GEISHA Id paraxis.Buchberger.1998 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation Buchberger A, Seidl K, Klein C, Eberhardt H, Arnold HH. cMeso-1, a novel bHLH transcription factor, is involved in somite formation in chicken embryos. Dev Biol. 1998 Jul 15;199(2):201-15. Copyright Copyright © 1998 Academic Press. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204946). paraxis is also known as TCF15 in NCBI.
Entry 12 GEISHA Id Paraxis.Fleming.2013 Data Source Publication Complete cDNA Template Probe show CCGCTCGGACGCAGGAGCGGAGCGGCGGCAGCGTGTCAGCGGGGGAAAGGTTGCCCGCAGCCCGAGGGCTGCCCGCGGC
Citation Fleming BM, Yelin R, James RG, Schultheiss TM. A role for Vg1/Nodal signaling in specification of the intermediate mesoderm. Development. 2013 Apr;140(8):1819-29 Copyright © 2013. Published by The Company of Biologists Ltd Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204946.2). Paraxis is also known in NCBI as TCF-15, bHLH-EC2 protein, protein bHLH-EC2, and transcription factor 15.
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