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SEMA3D semaphorin 3D Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol SEMA3D Official Full Name semaphorin 3D CGNC ID 4949 also known as semaphorin-3D, semaphorin-3D|COLL-2|collapsin-2|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D, SEMA3D, Collapsin-2 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Links to other databases
Entry 1 GEISHA Id SEMA3D.Jin.2006 Data Source Publication Complete cDNA Template Probe show TGGACTACTTTTCTGAAAGCAGGCTTGTGTGTTCAATACCTGGTCCTGAAGGAGCTGACACACATTTTGATGAGCTGCA AGATATATTCTTACTTTCTACAAGAGATGAGAGAAACCCTCTTGTATATGGAGTCTTCACTACAACAAGCTCCGTCTTC AAGGGCTCTGCAGTTTGTGTGTACAGCATGGCAGATATCAGAGCTGTTTTCAATGGCCCTTATGCTCACAAAGAGAGTG CGGATCATCGATGGGTTCAATACGAAGGTCGTATCCCCTATCCCAGACCTGGTACATGCCCAAGCAAAACCTATGATCC ACTCATAAAATCTACCAGAGATTTTCCCGATGAAGTCATTAGCTTTATAAAGCGCCATCCCCTGATGTACAAATCCGTT TACCCACTGACGGGAGGACCAGTGTTCACGCGAATCAATGTGGACTATCGGCTGACTCAGATTGTGGTGGATCATGTCA TGGCAGAGGACGGGCAATATGATGTTATTTTCCTAGGAACAGACATAGGCACAGTACTGAAAGCTGTGAGTATCACCAA GGAGAAGTGGACTAAGGAGGAGGTAGTCCTGGAAGAGCTACAGATATTCAAGCACCCTTCATTTATTTCAACCATGGAG ATTTCTCAGAAGCAGCAACAATTGTACATTGGTTCCAGGGATGGATTGGTTCAGCTCTCTCTGCACAGATGTCACACGT ATGGGAAGGCTTGTGCAGACTGCTGCCTTGCCAGAGACCCATACTGTGCC
Citation Jin Z, Chau MD, Bao ZZ. Sema3D, Sema3F, and Sema5A are expressed in overlapping and distinct patterns in chick embryonic heart. Dev Dyn. 2006 Jan;235(1):163-9. Copyright Copyright © 2006 Wiley-Liss, Inc.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-30
stage 28
stage 28
stage 28
stage 28
stage 28
Endocardium Heart Myocardium Valves 31-38 stage 35
stage 35
stage 35
stage 38
stage 38
stage 38
Ventricles
Entry 2 GEISHA Id Sema3D.Bao.2006 Data Source Publication Complete cDNA Template Probe show GAATTCCGGCCTCCCGATCCCGATCCCGATCCCGGCACCGGCCCCGGCCCCGCACAGCGCTCAGCCCGCACCGCGCCGC CTCTCCGCTCCCCGCAGATTAAACTTGGATTGTTTGAAGAGTGGGGAAATATTTCTCCATAGTGCAAAAAGTGCATAAG AAGAGAGCAGAATGAGAGCTTCCCAAGTACCGAATGCCTGCAGCCTGTTATCTTTAGCAATGCTGTTCTTTCCCGTCAC TGGAACGTCAAAACAAAATATCCCAAGACTCAAACTTTCCTATAAAGACTTGCTGCTTTCAAACAGCTGCATCCCATTC CTGGGCTCTACAGAGGGGCTAGATTTTCGAACCCTGCTGCTAGATGAGGAGAGGGGCCGGCTGCTAGTCGGGGCAAAAG ACCACATCTTCCTGCTCAACTTGGTTGATTTAAACAAAAATGTAAAAAAGATTTACTGGCCTGCAGCAAAAGAAAAAAT GGAATTATGCAAACTAGCTGGGAAAGATGCCCATACAGACTGTGCCAATTTTATTAGGGTCCTTCAGCCCTACAATCGA ACGCATGTTTATGTCTGTGGCACAGGAGCATTTCACCCTCTCTGTGGATACATTGAACTTGGCACTCACAAAGAGGAAA CAATATTCAGGCTGGATACTCAGAACTTGGAGTCGGGCAGGTTGAAATGCCCTTTCGATCCTCAGCAGCCATTTGCATC GGTGATGGCAGATGAGTATCTTTATGCTGGAACAGCTTCTGATTTCCTTGGCAAAGACACTGCTCTAACACGTTCCCTG GGCCCTTCTCACGACCACCATTACATCAGAACTGACATTTCTGAACATTACTGGCTTACTGGAGCAAAATTCATTGCAA CTTTTCCCATCCCGGACACCTATAATCCGGATGATGACAAAATCTACTTCTTCTTCCGAGAAATATCACAAGATAGTAG CACCTCTGACAAGACAATTCTTTCTCGAGTTGGGAGAGTTTGTAAGAATGATATGGGAGGTCAACGGAGCCTAATAAAC AAATGGACTACTTTTCTGAAAGCCAGGCTTGTGTGTTCAATACCTGGTCCTGAAGGAGCTGACACACATTTTGATGAGC TGCAAGATATATTCTTACTTTCTACAAGAGATGAGAGAAACCCTCTTGTATATGGAGTCTTCACTACAACAAGCTCCGT CTTCAAGGGCTCTGCAGTTTGTGTGTACAGCATGGCAGATATCAGAGCTGTTTTCAATGGCCCTTATGCTCACAAAGAG AGTGCGGATCATCGATGGGTTCAATACGAAGGTCGTATCCCCTATCCCAGACCTGGTACATGCCCAAGCAAAACCTATG ATCCACTCATAAAATCTACCAGAGATTTTCCCGATGAAGTCATTAGCTTTATAAAGCGCCATCCCCTGATGTACAAATC CGTTTACCCACTGACGGGAGGACCAGTGTTCACGCGAATCAATGTGGACTATCGGCTGACTCAGATTGTGGTGGATCAT GTCATGGCAGAGGACGGGCAATATGATGTTATTTTCCTAGGAACAGACATAGGCACAGTACTGAAAGCTGTGAGTATCA CCAAGGAGAAGTGGACTAAGGAGGAGGTAGTCCTGGAAGAGCTACAGATATTCAAGCACCCTTCATTTATTTCAACCAT GGAGATTTCTCAGAAGCAGCAACAATTGTACATTGGTTCCAGGGATGGATTGGTTCAGCTCTCTCTGCACAGATGTCAC ACGTATGGGAAGGCTTGTGCAGACTGCTGCCTTGCCAGAGACCCATACTGTGCCTGGGATGGAAACTCCTGTTCCAGAT ACGCCCCCACTTCTAAAAGGAGAGCCAGAAGGCAAGATGTCAAATATGGAGACCCTGTCGCACAATGCTGGGATGTAGA AGACAGCATTAGTCATGAAACTGCTGATGAAAAGGTGATTTTTGGCATTGAATTTAATTCAACTTTTCTGGAATGTATT CCTAAGTCCCAGCAAGCCTCTATTAGGTGGTATATTCAACGCTCTGGAGAAGAGCATCGAGAAGAGCTGAAGGCAGACG AAAGGATCATCAAAACAGAACATGGGCTGCTGATCCGCAGCTTGCAAAGGAGGGATGCAGGAGCCTATTTCTGCAAAGC CCAGGAACACACCTTCATCCACACCATTGTGAAGCTGAATTTAAATGTCATTGAGAATGGGCAAATGGAAAGCACACAG AAAACTGAGGATGAGGAGGGTCGGGTGAGGGATTTGCTGACAGAGTCCCGTCTGAGGTACAAGGACTATATCCAGCTCG TGAGCAGCCCCAGCTTTAGCCTGGATGAGTACTGTGAACAAATGTGGCACCGGGAGAAACGACGACAGCGAAACAAAGG TGGTGCCAAATGGAAGCATGTGCAGGAGATGAAAAAAAAGCGAAACCGAAGGCATCATGAGCCAGCCAGGCCACCATCC ACATAGTTTGCAAACACTATTTAAAGAAAGGACACTTTCCAGGAAAAAAAAAATACTGTGTTTCGGTTTTGTGCATATT GCCTATGAATTAGTACTGCTTCTCCTTGACATCAGATAACTCATCATCACTATTAATCTGTACATGACTGAACAATGGG GTTTGATACCTTATTGGAGTGCCACCCACCAGGCAATAATTCCAAATTCATTCATTAAAAAGAAAAGATGTACACTTGT AGCTAATTTCTGGACAGCCTGAGGCTACG
Citation Bao ZZ, Jin Z. Sema3D and Sema7A have distinct expression patterns in chick embryonic development. Dev Dyn. 2006 Aug;235(8):2282-9. Copyright Copyright © 2006 Wiley-Liss, Inc. Comments This reference associated with full length mRNA in NCBI (NM_205373).
Entry 3 GEISHA Id Sema3D.Riley.2010 Data Source Publication Complete cDNA Template Probe show GAATTCCGGCCTCCCGATCCCGATCCCGATCCCGGCACCGGCCCCGGCCCCGCACAGCGCTCAGCCCGCACCGCGCCGC CTCTCCGCTCCCCGCAGATTAAACTTGGATTGTTTGAAGAGTGGGGAAATATTTCTCCATAGTGCAAAAAGTGCATAAG AAGAGAGCAGAATGAGAGCTTCCCAAGTACCGAATGCCTGCAGCCTGTTATCTTTAGCAATGCTGTTCTTTCCCGTCAC TGGAACGTCAAAACAAAATATCCCAAGACTCAAACTTTCCTATAAAGACTTGCTGCTTTCAAACAGCTGCATCCCATTC CTGGGCTCTACAGAGGGGCTAGATTTTCGAACCCTGCTGCTAGATGAGGAGAGGGGCCGGCTGCTAGTCGGGGCAAAAG ACCACATCTTCCTGCTCAACTTGGTTGATTTAAACAAAAATGTAAAAAAGATTTACTGGCCTGCAGCAAAAGAAAAAAT GGAATTATGCAAACTAGCTGGGAAAGATGCCCATACAGACTGTGCCAATTTTATTAGGGTCCTTCAGCCCTACAATCGA ACGCATGTTTATGTCTGTGGCACAGGAGCATTTCACCCTCTCTGTGGATACATTGAACTTGGCACTCACAAAGAGGAAA CAATATTCAGGCTGGATACTCAGAACTTGGAGTCGGGCAGGTTGAAATGCCCTTTCGATCCTCAGCAGCCATTTGCATC GGTGATGGCAGATGAGTATCTTTATGCTGGAACAGCTTCTGATTTCCTTGGCAAAGACACTGCTCTAACACGTTCCCTG GGCCCTTCTCACGACCACCATTACATCAGAACTGACATTTCTGAACATTACTGGCTTACTGGAGCAAAATTCATTGCAA CTTTTCCCATCCCGGACACCTATAATCCGGATGATGACAAAATCTACTTCTTCTTCCGAGAAATATCACAAGATAGTAG CACCTCTGACAAGACAATTCTTTCTCGAGTTGGGAGAGTTTGTAAGAATGATATGGGAGGTCAACGGAGCCTAATAAAC AAATGGACTACTTTTCTGAAAGCCAGGCTTGTGTGTTCAATACCTGGTCCTGAAGGAGCTGACACACATTTTGATGAGC TGCAAGATATATTCTTACTTTCTACAAGAGATGAGAGAAACCCTCTTGTATATGGAGTCTTCACTACAACAAGCTCCGT CTTCAAGGGCTCTGCAGTTTGTGTGTACAGCATGGCAGATATCAGAGCTGTTTTCAATGGCCCTTATGCTCACAAAGAG AGTGCGGATCATCGATGGGTTCAATACGAAGGTCGTATCCCCTATCCCAGACCTGGTACATGCCCAAGCAAAACCTATG ATCCACTCATAAAATCTACCAGAGATTTTCCCGATGAAGTCATTAGCTTTATAAAGCGCCATCCCCTGATGTACAAATC CGTTTACCCACTGACGGGAGGACCAGTGTTCACGCGAATCAATGTGGACTATCGGCTGACTCAGATTGTGGTGGATCAT GTCATGGCAGAGGACGGGCAATATGATGTTATTTTCCTAGGAACAGACATAGGCACAGTACTGAAAGCTGTGAGTATCA CCAAGGAGAAGTGGACTAAGGAGGAGGTAGTCCTGGAAGAGCTACAGATATTCAAGCACCCTTCATTTATTTCAACCAT GGAGATTTCTCAGAAGCAGCAACAATTGTACATTGGTTCCAGGGATGGATTGGTTCAGCTCTCTCTGCACAGATGTCAC ACGTATGGGAAGGCTTGTGCAGACTGCTGCCTTGCCAGAGACCCATACTGTGCCTGGGATGGAAACTCCTGTTCCAGAT ACGCCCCCACTTCTAAAAGGAGAGCCAGAAGGCAAGATGTCAAATATGGAGACCCTGTCGCACAATGCTGGGATGTAGA AGACAGCATTAGTCATGAAACTGCTGATGAAAAGGTGATTTTTGGCATTGAATTTAATTCAACTTTTCTGGAATGTATT CCTAAGTCCCAGCAAGCCTCTATTAGGTGGTATATTCAACGCTCTGGAGAAGAGCATCGAGAAGAGCTGAAGGCAGACG AAAGGATCATCAAAACAGAACATGGGCTGCTGATCCGCAGCTTGCAAAGGAGGGATGCAGGAGCCTATTTCTGCAAAGC CCAGGAACACACCTTCATCCACACCATTGTGAAGCTGAATTTAAATGTCATTGAGAATGGGCAAATGGAAAGCACACAG AAAACTGAGGATGAGGAGGGTCGGGTGAGGGATTTGCTGACAGAGTCCCGTCTGAGGTACAAGGACTATATCCAGCTCG TGAGCAGCCCCAGCTTTAGCCTGGATGAGTACTGTGAACAAATGTGGCACCGGGAGAAACGACGACAGCGAAACAAAGG TGGTGCCAAATGGAAGCATGTGCAGGAGATGAAAAAAAAGCGAAACCGAAGGCATCATGAGCCAGCCAGGCCACCATCC ACATAGTTTGCAAACACTATTTAAAGAAAGGACACTTTCCAGGAAAAAAAAAATACTGTGTTTCGGTTTTGTGCATATT GCCTATGAATTAGTACTGCTTCTCCTTGACATCAGATAACTCATCATCACTATTAATCTGTACATGACTGAACAATGGG GTTTGATACCTTATTGGAGTGCCACCCACCAGGCAATAATTCCAAATTCATTCATTAAAAAGAAAAGATGTACACTTGT AGCTAATTTCTGGACAGCCTGAGGCTACG
Citation Riley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_205373.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 13
Midbrain 19-20 stage 20
Midbrain
Mouse Frog Fruit Fly Zebra Finch Zebrafish