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Human Disease Gene Search
VAX1 ventral anterior homeobox 1 Gene Summary Expression Other Species Expression JBrowse Gene Official Symbol VAX1 Official Full Name ventral anterior homeobox 1 CGNC ID 49384 also known as cVAX, ventral anterior homeobox 1|Vax, Ventral anterior homeobox 1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Molecular Function chromatin DNA binding , sequence-specific DNA binding transcription factor activity , more... transcription regulatory region sequence-specific DNA binding Biological Process axon guidance , brain development , camera-type eye development , more... negative regulation of neuroblast proliferation , negative regulation of transcription from RNA polymerase II promoter , neuron migration , palate development , skeletal muscle cell differentiation , transcription, DNA-templated Cellular Component nucleus
Links to other databases
Entry 1 GEISHA Id Vax.Canto-Soler.2006 Data Source Publication Complete cDNA Template Probe show GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA CTGGACTGA
Citation Canto-Soler MV, Adler R. Optic cup and lens development requires Pax6 expression in the early optic vesicle during a narrow time window. Dev Biol. 2006 Jun 1;294(1):119-32. Epub 2006 Mar 27. Copyright Reprinted from Developmental Biology, 294, Issue 1, M. Valeria Canto-Soler and Ruben Adler, Optic cup and lens development requires Pax6 expression in the early optic vesicle during a narrow time window, 119-132, 2006, with permission from Elsevier.
Copyright © 2006 Elsevier B.V. All rights Comments Probes were generated from cDNAs generously provided by the following investigators: cVax (Constance Cepko, Harvard Medical School, Boston, MA). ." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204799)
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 7-12
stage 11
Retina 13-18 stage 18
Retina
Entry 2 GEISHA Id VAX.Peters.2002 Data Source Publication Complete cDNA Template Probe show GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA CTGGACTGA
Citation Peters MA, Cepko CL (2002). The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments. Dev Biol. 2002 Nov 1;251(1):59-73. Copyright "Reprinted from Developmental Biology, 251(1), Peters MA, Cepko CL, The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments, 59-73, Copyright (2002), with permission from Elsevier". Copyright © ( 2002) Elsevier B.V. All rights reserved.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18 stage 17
stage 18
stage 18
stage 18
Retina 19-24 stage 19
stage 22
Retina 31-44 stage 44
stage 44
Entry 3 GEISHA Id Vax.Zhang.2001 Data Source Publication Complete cDNA Template Probe show GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA CTGGACTGA
Citation Zhang XM, Yang XJ (2001). Temporal and spatial effects of Sonic hedgehog signaling in chick eye morphogenesis. Dev Biol. 2001 May 15;233(2):271-90. Copyright Copyright © 2001 Academic Press. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204799).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-24 stage 22
stage 22
stage 24
stage 24
Eye Retina
Entry 4 GEISHA Id VAX.Halilagic.2007 Data Source Publication Complete cDNA Template Probe show GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA CTGGACTGA
Citation Halilagic A, Ribes V, Ghyselinck NB, Zile MH, Dollé P, Studer M. Retinoids control anterior and dorsal properties in the developing forebrain. Dev Bio 2007 Mar 1;303(1):244-58 Copyright Reprinted with permission from Elsevier.
Copyright © 2007 Elsevier B.V. All rights reserved. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204799.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19 stage 19
stage 19
Eye Head Mesenchyme
Entry 5 GEISHA Id cVAX.Schulte.2005 Data Source Publication Complete cDNA Template Probe show GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA CTGGACTGA
Citation Schulte D, Peters MA, Sen J, Cepko CL. The rod photoreceptor pattern is set at the optic vesicle stage and requires spatially restricted cVax expression. J Neurosci. 2005 Mar 16;25(11):2823-31. Copyright
Copyright © 2012 by the Society for Neuroscience
Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204799.1
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-16 stage 16
stage 16
stage 16
Eye Face Mesenchyme
Entry 6 GEISHA Id cVAX.Smith.2018 Data Source Publication Complete cDNA Template Probe show ATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAGAGACTGAAGCCAATCGGGTCTCGAAGAACGGACACA AGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTACTTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGC CTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCGGCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGA GATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCCTCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCT TCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCGGTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCT GGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGGTTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAG GGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCGCCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCC GCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTGCCGCCCTGTGCCAGCGGAGCGCTGGGCTCGGCGCTGCGGGGCCC CGGCCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCGGCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCG AGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGCTGCACGGAGCGGCCGCCGCCGCCGCCGGGCACGGGCTCT TCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGGGCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCT GGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGCTCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAA GAAAGCGCTGAGAAAAAAGCACTGGACTGA
Citation Jonathan N Smith, Heather M Walker, Hannah Thompson, J Martin Collinson, Neil Vargesson, Lynda Erskine. Lens-regulated retinoic acid signalling controls expansion of the developing eye. Development. 2018 Oct 10;145(19):dev167171. DOI: 10.1242/dev.167171. Copyright Copyright © 2018. Published by The Company of Biologists Ltd. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204799.3). cVAX is Also known as VAX1.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-23 stage 23
Retina all
Mouse Frog Fruit Fly Zebra Finch Zebrafish