GEISHA - A Chicken Embryo Gene Expression Database
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CBX3
chromobox 3

Gene
Official SymbolCBX3
Official Full Namechromobox 3
CGNC ID8386
also known aschromobox protein homolog 3|chromobox homolog 3 (HP1 gamma homolog, Drosophila)|chromobox protein (CHCB2)
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_204643
PolypeptideNP_989974
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human11335ENSG00000122565MIM:604477
Mouse12417ENSMUSG00000029836All phenotypic alleles (1):Gene trapped(1) MGI:108515
Xenopus100038121, 399208, 380460492314
Zebrafish751689, 567497ENSDARG00000003860, ENSDARG00000092158ZDB-GENE-030131-1158, ZDB-GENE-070628-2ZFIN:ZDB-GENE-030131-1158, ZFIN:ZDB-GENE-070628-2
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395355
Ensembl GeneENSGALG00000011038
KEGGgga:395355
GEISHA IdHP1γ.Papanayotou.2008Data SourcePublication
Complete cDNA Template Probeshow
GCTGCCGCCGCCGCTCAGAGCGCGCAGGGCGAGACCGGGAGGAGACGGGGGAGCGGCGCGCCGAGCGGCAGTAAACACA
AAATGGGAAAGAAACAAAATGGCAAAGGTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTTGTGGAGAAAGTCCT
GGACAGACGTGTTGTGAATGGAAAGGTGGAATACTACTTGAAGTGGAAAGGATTTACAGATGCTGACAACACGTGGGAG
CCTGAAGAAAACTTAGATTGTCCAGAGCTAATTGAAGCTTTTCTGAACTCTCAGAAAGCTGGTAAAGAAAAAACAGATG
GTGCGAAAAGAAAATCACTGTCAGATAGCGAATCTGATGATAGTAAATCAAAGAAAAAACGTGATTCTGTTGATAAACC
GAGAGGGTTTGCGAGGGGTCTTGATCCTGAGAGGATAATTGGGGCTACGGATAGCAGCGGAGAGCTTATGTTCCTCATG
AAATGGAAAGACTCTGATGAGGCAGATCTGGTGCTGGCCAAAGAAGCTAACGTGAAGTGTCCTCAGATTGTAATTGCTT
TTTATGAAGAACGACTAACTTGGCATTCATGCCCTGAAGATGAAGCACAATAATTGTTTGCATCACTTTTTTTTTATAT
ATATGAATATTAAAACCTGAAATTTGATTTATTAGCGATGTGAGAAGCATACATTCTAACAAAATTCAAATTTGATATT
TTTTTGAAGTAGTGTGTTTTGCATCAACAGCAAGTAAATAAAAGCTTTCTGCAACTTGTTTCGTTTATCACAGGGAGAG
CATTTGATACTAGTACTTCCTCCATATTAGGTAAAAGCTTTTATAAAACATTCATAAACTTCCATGGTTATTATTGAAT
CTTAATGAATGTCTAAACAAACTCACGGATGTTTTGTAGTCTTCTATACCGTTGATGTGCATGTATCTTCTTTACCCAA
ACCTAGCCCTTTACACCTGTAGATTCATTCTTTTTAGTGTTTGGGATCACACGATCCCAAGAAGACCAGGTGAAAATTA
ACTTTGTAGTAATTTGAATGTTATCAGACTGTATATTGTTTACTTTATTGTAAATACTGGTGAACAGTGGTCAATAAAA
TAGTTTTATATTCTTCCTTTATAATGATAGGCTGTGACTCTTTTGAAGCGGTATAATATTTCTGAACTTTTTATATGTT
AAGCTCTCAGTTCATGATGTATTTAACTGTAAGTTGTTCTTTTGGGGATAGATTGATATTACCCCATTGCTACTCTGTA
ATAACAATACCAGACAAATGTCAGGCTTTGATTCTCTAATTTTTTTGGTGAAGTGTAATATTTTTTGTTTTTTTTTTTC
AGTCAGAAAGAGCCAACATTTTTGGGCTGTGAAATTCATGTGCTCTGGGTACTTGGTTAAGTTGCACAGATCGCAGCTA
TGCTGCCTGGTTATGGCTGCTGGTCACAGGGCCAAGCGGCCTCTGCAGATGTATTGGAAAATACCTGGTGTGTTGGCAA
TGGCAACCTTTGCTTTAATTTTGGGTCTTAATATGGGGCTATACTGTAACAAGTGATAGGATGGTTCAGGTAGAATTAC
TCTTCGGGCAATGGCCTGAAAAATACTTCCATAGTTCTATGCCTTTAAAGTGTAATATTTTAATCCAGATTCTAAGCTG
TATACTTTTGAATTAAGAGGCTTTGTTTGTTTCTCATTGAATTCTAAATTGGGTCATGTCATCTGCTGCTGGGAGAATG
CCCTCAGGTCGGCAAAAGTGAGGGATGGAGAATTTGGAAGAAAAGAATTTTGCTTTTTTCCATTCTTCTTCCACTTGTT
ATTCCTCTCTCCACTTGCTTTTGTCTACATGCATTCTTTTATTTGGGTTATGACTAGCATGGCGGTTTGGCCTTAAGCT
TTGCCTTTTCATAGGTCAGTGGCCAACCTTGTTTTAGAATTCCTCTTAGTACATTTTGAACAGACTAATCATGTCTCAT
GCTGCTGTCACAGTCCTGTGTGAGATGATGGGATTCCTTAAGAACGGCTATTCCTGGAAACCTTCATAGGTATCCCGAG
GAGAAAACAAAGGACCTTTTAATCTTTTTCATAGACTCATAAATCATGATTAAAACCGTTTGTCCTCATGTAGATTCCA
AAGCTGTTTATATCATGAATGGAACCCTTGTAAAAACATTGTATCGCAAGTAAACACTGGGATGGTTAAAGTAATGCTA
AGTTACCTTTTTAGGTGTAACTGCTTTATCTTCTCAATATTTTTTCTTACTGGATATGACCGCAATTCAGTCACTGTGG
CTTTAGGAAAAAAAAAGATGTTGTGTGGGGTTCCCTTGCTCTGGTTAATGATGGTTTCCGAGCTTAGTTTGCTTCTCTT
GCCTACTCCTTTGAGAAATGTCCCTGAATTTGTTGTATGTGAAAGTCTGCAGTTAATTCTTTGGGGCCTCTAATAGGAA
TATCGCTACACCTGGTGTGTGGGATTCCTAAATATTGCTTTTTTACCCAGTTGCCTGAGAAATACACAGGCTAAATGAG
AATTCTAAAGCAGCATGCATTTTCCTGTCTTCAGTATGAAATACTTTTAAATTCAGTCTTAAAATATTTCACAGTTTGT
GTTCTGCTGTCTGAAACTTTGCAGTTTCTTTGTTTCAAGAGTGGATATTGAGTTTATATAACGTTGCTGGTTTTAGTCA
CTATAGATTGAAGAGTCGGTTATCAGTTATTGTAAGTGGTAGGCGTGTAAAGATTTATGTTGAAAGGTTGTTTCCCAGC
AATTTGTAACCTTTAAAATGTTATTTTGCAACTAGATAACAGCTTTTACCTGTATTTGATTCTTCCTTCTGACAATCTG
TAAACATGCACTGTACTCACATTTAAACTACTATACAGCTTGTTACAGTTACGTAGATTTCTAATTTTTTACATTACGA
TGGTAGAAATGCTGACTGGTATTTGTTTCCTTTTTTCCCCCCTTCCCCCCCTTGGTTTGTGTCAAACTGCATTTTGACA
GTGACGAAATGCAACACTTGGAAGTTACAAGTTCTGTAAAGTTATGCTGAATGTGCTTGGTACATATGCAAAAAGACGT
TATCTAATGTTAGTAACTTTAACTGATTAAATAAATGAATTATCTTCTGTAGTTAGCGAGTTAAAAAAAA
CitationPapanayotou C, Mey A, Birot AM, Saka Y, Boast S, Smith JC, Samarut J, Stern CD (2008). A mechanism regulating the onset of Sox2 expression in the embryonic neural plate. PLoS Biol. 2008 Jan;6(1):e2.
CopyrightCopyright: © 2008 Papanayotou et al.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204643.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Epiblast
Kohler's Sickle
 
1-3
stage 2
stage 3
stage 3
Epiblast
Neural Plate/Tube
Primitive Streak
 
4-6
stage 4
stage 4
stage 5
stage 6
Ectoderm
Epiblast
Headfold
Hensen's Node
Neural Plate/Tube
Primitive Streak
Stage 4+
7-12
stage 8
Neural Plate/Tube
 
31-44
stage 44
Epiblast
Headfold
Neural Plate/Tube
 

Mouse

EmageMGI:108515
MGI GXDMGI:108515

Frog

Xenbase492314

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-1158, ZDB-GENE-070628-2
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