Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

BCAN
brevican

Gene

Official Symbol	BCAN
Official Full Name	brevican
CGNC ID	52630
also known as	brevican core protein
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI

Sequence Information

Genomic
RNA	XM_423655
Polypeptide	XP_423655

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	63827	ENSG00000132692		MIM:600347
Mouse	12032	ENSMUSG00000004892	All phenotypic alleles (1):Targeted, other(1)	MGI:1096385
Xenopus	398229			5829330
Zebrafish	334113	ENSDARG00000016736	ZDB-GENE-030131-6045	ZFIN:ZDB-GENE-030131-6045

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	425976
Ensembl Gene
KEGG	gga:425976

Entry 1

GEISHA Id	BCAN.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGCCATCAGTGCCAGCATTG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGAAGAGTTTGTCCCTTCTCGGTAGC	cDNA Template Length	539
Forward cDNA Template Probe	show AGTAGCATCGTATCTGCTCTGGGCATCGGGGAAATCCCGTCTGGTTGCGAAACTGGAAGATGGTTTTGACACCCGGCAG GGCTCCTCCACAGCGCTCCCTCGGGGTGACGATGGGATAGCGGACGCTGCCATCAGCCAGCCAGCCCGGGTTGCAGGCA TCCAACCCTGCACTCCAGGCTGCATACAGCTGCCCCGTGCTCGCCAGCACCGCACCCTGCGCCCGGCACCGCGCCGCCG CCTCCTCCAGGGTAAACTTGTCCGGGGCTGTCTCCAAAAATATTTCCCCTGGCACGTCCTCGGCATAACAGTACACGTC GTACATGTCCTCCGGGTCCACCACGCCGTAGTTCCTCACCCCAGGGAAGCCATTCATGTCTCCATAGCACGCCTCGCGG GGGGTGTGGATGGGGTACCTGACAGTCTGGTCAGCGATCCAGCCAGCATCACACTGCTCATAGCCGCCCAGATAGGCAG CATACAGCTGCTCAGGGGTGGCAATGCTGGACTTGATGGCA

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

stage 10

Amnion
Anterior Intestinal Portal
Aorta
Blood Islands
Ear/Otic Placode
Extraembryonic Blood Vessels
Eye
Forebrain
Head Mesenchyme
Heart Tube
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharynx
Primitive Streak
Sinus Venosus
Somites
Widespread Expression
extraembryonic mesoderm

13-18

stage 13

stage 17

stage 18

Foregut
Myotome
Neural Plate/Tube
Notochord
Proepicardium
Sclerotome
Sinus Venosus
Somatic Mesoderm
Widespread Expression

19-24

stage 21

stage 22

Dermomyotome
Foregut
Head Mesenchyme
Mesonephros
Myotome
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm

stage 25

Dermomyotome
Foregut
Head Mesenchyme
Myotome
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord

Entry 2

GEISHA Id	BCAN.Domowicz.2008	Data Source	Publication
Complete cDNA Template Probe	show AAAGAGAGAGAGAGAGAGAGAGAGAGCCACGGACACGGACACACACAGAGGACTCCTCTCCTTTCGGTGCCTGCACTTA TGCCCGGTGCAGCTCACTCCCAGCCCTGCTGCCAACCTGCTGCCTACTGCCGCCCCGGAGAAACCTCAGCTCAGCCCCA CTCCGGGCTCCCGGGGACCCCCGCCCGCACCGTGAGCAAGGTGGGACACGGGGAGAGCCCCTCCTGCGGGCGCTGTGCT GCGCTATTCGTTGCCATATCTCATGTCACCTCTGTGCCAGCTGAAAGGCACAGGATGGCCTCAGTCCTCCCACTGCTGC TGCTCTGGGCGTTTGCCCCCACAGTGGTCCCGGAGGTGCTCAGCCCTGAAGATGTCACAGATGACCTCAAGGCCCTGCA GGTGTCCATCCCGCGGCACCCAGCCCTGCACGCTGTGCTGGCAGGGGACGTCACCATCCCCTGCCTCATCACCTACCTC GCACCCCTGCCCACTGCCAGCACGGCGGGGCGCCGGGCTGTGCTGGGAGCCCCCCGGGTCAAGCATGAGGAAATACCGG CGGGGCGCCGGGCTGTGCTGGGAGCCCCCCGGGTCAAGTGGACCTTCATCTCCGAAGGCAGGGAGGCAGAGATCTTGGT AGCACGGGGGGAAAGGGTGAAGGTGAGTGAGGACTACCGCCTCCGTGCCTCCTTGCCAGTCTTCCAGCAGCGCTACACT GACGCCTCTCTGCTGCTCACTGAGCTGCGCCCCAACGACTCGGGGATCTACCGCTGTGATGTGCAGCACGGCATCGAGG ATGGCCACGACATCCTCGACCTCAGAGTCAAAGGGGTGGTGTTTCACTACCGTGGGGGTTCCACACGCTACACCTACAC TTTTGCTGAGGCTCAGGAGGCGTGCACTGCCATCAGTGCCAGCATTGCCACCCCTGAGCAGCTGTATGCTGCCTATCTG GGCGGCTATGAGCAGTGTGATGCTGGCTGGATCGCTGACCAGACTGTCAGGTACCCCATCCACACCCCCCGCGAGGCGT GCTATGGAGACATGAATGGCTTCCCTGGGGTGAGGAACTACGGCGTGGTGGACCCGGAGGACATGTACGACGTGTACTG TTATGCCGAGGACGTGCCAGGGGAAATATTTTTGGAGACAGCCCCGGACAAGTTTACCCTGGAGGAGGCGGCGGCGCGG TGCCGGGCGCAGGGTGCGGTGCTGGCGAGCACGGGGCAGCTGTATGCAGCCTGGAGTGCAGGGTTGGATGCCTGCAACC CGGGCTGGCTGGCTGATGGCAGCGTCCGCTATCCCATCGTCACCCCGAGGGAGCGCTGTGGAGGAGCCCTGCCGGGTGT CAAAACCATCTTCCAGTTTCGCAACCAGACGGGATTCCCCGATGCCCAGAGCAGATACGATGCGTACTGCTACCGAGAA GGGACAAACTCTTTCCCTGAGGCTGCAGGAAAATATCAAGCCAGAGAGCCCGAGGGCCTCCAGGAGATTGTTACAGTGG CAGAAAAGCTGGAGGAGCTGCAGCTGCCCAAAGCGCAAGTGGAGATTGAGTCGCGAGGGGCTATATACGCCGTCCCTTT CTTTAAGGACGTGGCTGATGCTGAGCTGGAAAAGCCAAGCCTGTCCCCCGAAGACACCCGGCACCCCCCAGTAGATGCC TCCTCGTCCTCAGCACGAGGACATCACCCATCCTCAGCCGCCCCTTTCCCCACAGCCCCAGCCGTCCCCAAGGCAGGCG TCCCGCATAGCTGTGCTGCACAACCAGGCAGCCCATCCCCTGCAGACCAGGACGGGGCGACAGGGAAAGGTGGAAGGTG CGCAGAGGCCAGGCAAGAGCCATCCCGCACGGAGGATGGAGCAGCGCTGGAGTGGCCCCTGGGCTCTGTGCTGGGTGAG GACTTCGGGAACACAGCAGCAGAGAGTCCGGGCAGAGGGCAAGAGCCTGGACAGCCCATGAAGCCGAACGTGCAGACAC TTTTGGTGGGCACAGAAGGACCCAGTGACGCTCTGTCCCCAGCGGTGGCTGCAGCAGATATCCAAGAGCCATCCCCCTC CATAGGCAGCCGTGGGGCCGGGGGGGCGAGCACCCCCATCCACACCGCGGGGGCTGCTGAGGACCCTGAGCTATCAGGA GATGTGACTGAAAACCCCGGGGCATCCCCGCTGCCCCCCGCACCGCCGCAGCTGCAGGATGATGGAGAGGAGCAGTCGG GGGCCCCGTGGCTCTCCTCACCCACAGCACCGGGGGATGGGGGCACAGCCCCAGCGACGGCGGTCACCCCATGGCACGC AGAGGTGCCCGGCAGCAGCGATGCACTGCAAACCCCAAGCACCGATCGCGGGATGCCCGCTGCATCTTCAGAAGAGGAG GAGGATGAGGAAGAGGAGGAGGATGAAGAAGAGCGCCCGATGCCCTCTGTTGCAACCGTGGAGGGTTTCCTTGCAGCCA TTCCCGGAGAACCAGGTGGCTGCATCCCCAACCCCTGCCTGAACGGAGGGACCTGCATTGAGGATGGCACCCATCCCAC CTGCCTCTGCCTGCCAGGCTATGGAGGGAGCAGCTGCGAGAGACCGCTGAAGAGGTGCAGCCCCAGCTGGGACAGCTTC CAGGGAGCCTGCTACAAGCACTTCTCCACCCGGAGGAGCTGGGAGGATGCCGAGTCGCAGTGCAGGAATTTTGGGGGGC ATCTGGCCACCATCCTGACCCCCGAGGAGCAGGACTTCATCAACGGTATGTGGGGCCAGCCCAGCCTGCAGGGCATGGG ACCCAGAATCCCTCCACAGTGGGTCTGA
Citation	Domowicz MS, Sanders TA, Ragsdale CW, Schwartz NB. Aggrecan is expressed by embryonic brain glia and regulates astrocyte development. Dev Biol. 2008 Mar 1;315(1):114-24. Epub 2008 Jan 22.
Copyright	Copyright © 2008 Published by Elsevier Inc.
Comments	The probe shown was generated using PCR and degenerate primers based on sequences of the mammalian orthologs. Authors indicated the clone was XP_423655, the protein for this cDNA.