GEISHA - A Chicken Embryo Gene Expression Database
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ARID5B
AT-rich interaction domain 5B

Gene
Official SymbolARID5B
Official Full NameAT-rich interaction domain 5B
CGNC ID2164
also known asAT-rich interactive domain-containing protein 5B|ARID domain-containing protein 5B|AT rich interactive domain 5B (MRF1-like)
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_001031220
PolypeptideNP_001026391
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human84159ENSG00000150347MIM:608538
Mouse71371ENSMUSG00000019947All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(1) Gene trapped(1) MGI:2175912
Xenopus100485942, 1003811231007578
Zebrafish572528ZDB-GENE-070112-1882ZFIN:ZDB-GENE-070112-1882
Gene Ontology
Molecular Functiontranscription coactivator activity, transcription regulatory region DNA binding
Biological Processadipose tissue development, more...positive regulation of sequence-specific DNA binding transcription factor activity, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene423661
Ensembl GeneENSGALG00000002991
KEGGgga:423661
GEISHA IdARID5B.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
TCAAGGGTAATCCAGGCATTATGTCACCCCTGGCAAAGAAAAAGCTGCTGTCGCAGGTCAGTGGGGCAGCCTTATCATG
TAGCTATCCTTACGGTTCTCCTCCACCTTTGATTAGCAAAAAGAAATTGAACAGCAGAGATGAACTGTCATCAAGCCTA
TCACAGGGTCCCCACGTCCCTAATTCTGATCCCATAGCAATTAATAGGCCATCGGTCATACAGCACGTGCAGAGTTTTA
AATCCAAGGAAGAAAGGAAATCAATTAATGATGTTTTCAAACATGACATGCTAAGTAAAGTGGATCCTCAGCGCTGTGA
TTTTTCACAACACTGCCTCAGTTCTCTTGCTGAGTCGTACGTACCGAAGACAGATATCCAGGACTGCAAAGATAAAATG
ACTGAGAAAAGGGCACTGCAGCACTCCCGTGTGCCCACTTTCTTGGCAGATTTTTATTCATCACCTCATCTGCACAACC
TTTATAGGCACACGGAGCACCACCTTAATAATGAACAGACATCAAAGTACCTCCCCCGGGACATGTTCAGAGAGTCTGA
AAATATTTCTACTTTTACTCAACACAAACACCAAGAAAAACTAAATTTAAATTATCACCCATCTTTGCATCAGCAAGAA
AAAAAGGCGACAGTGGAAGCCTCTTCAGATGATCAGCCAACAGATTTGAGTCTTCCAAAGAGCATACACAAACAGACTG
CAAAGGCTCCTGGCCCGGTCTCTCTCATTCATCTATGGCCAGCAAGAAGGCAAGGTGTCTCCCTGTTCCAGGCTGCGAG
CAGCCAAGGCAGTGAGCCTAGACTGTAACCCCAAAAGCTTGCCGCGTGTCCCCCAG
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XII
Unlabeled
 
1-3
stage 3
Area Pellucida
Primitive Streak
 
4-6
stage 5
Area Opaca
Primitive Streak
area opaca / posterior primitive streak
7-8
stage 8
Area Opaca
Neural Plate/Tube
area opaca / neural plate (weak)
all
 
  

Mouse

EmageMGI:2175912
MGI GXDMGI:2175912

Frog

Xenbase1007578

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070112-1882
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