GEISHA - A Chicken Embryo Gene Expression Database
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TFEB
transcription factor EB

Gene
Official SymbolTFEB
Official Full Nametranscription factor EB
CGNC ID2479
also known astranscription factor EB, Tfe3, Tfeb
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_001030922
PolypeptideNP_001026093
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human7942ENSG00000112561MIM:600744
Mouse21425ENSMUSG00000023990All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(2) Gene trapped(1) MGI:103270
Xenopus780105982674
Zebrafish562289ZDB-GENE-090807-3ZFIN:ZDB-GENE-090807-3
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene419922
Ensembl GeneENSGALG00000003404
KEGGgga:419922

Entry 1

GEISHA Idpgp2n.pk009.a14Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGCCGCCCCGCGCTGCCGCCCCGCGGGGTTCCGCGTTCCCTCCGCCCGCAGCCGCGGGGGTCACCTCCGTGCCTGGCCT
GCGTCCCACTGCCCCACTGCACCATGGCGTCCCGCATCGGGCTGCGGATGGAGCTGATGAAGCAGCAAGCACAGCAGGA
GGCCGAGCGGGAGCGCGCGCAGCAGCAGCTGATGATGAACTACATGCAGCAGCAGCGCATGCCTGTGGCCTCCAGCCCT
GCCATCAACACCCCCATCCATTACCAGTCCCCACCGCCCGTGCCTGGAGAGGTCCTCAAGGTGCAGTCCTACCTGGAGA
ACCCCACCACCTACCACCTGCAGAAGTCGCGGGATAAGAAGGTTCAGGCGTATCTCTCCGAGACCTATGGGAACAAGTT
TGCTGCCCACGTCAGCCCTGCCAGCCACTCGCCAAAGCCACCCCCAGCTGTGTCCCCCAGTGTCCGGCCCGGCCACGTC
ATGTCCTCCTCGGCGGGCAACAGCGCACCCAACAGCCCCATGGCCATGCTCAACATCGGCTCCAACCCTGAGCGGGAGT
TTGATGAGGTCATCGATGACATCATGCGCCTGGATGATGTTCTGGGCTATATGAACCCCGAAGTCCACATGCCCAACAC
ACTNNNGATGTCCAGCAGTCACATGAATGTCTATAGT
CommentsProbe sequence not yet determined, this sequence from Udel. No specific expression detected for stages 4-18.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19
Heart Tube
Somites
 

Entry 2

GEISHA IdTFEB.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCCATCAACACCCCCATCCATTAC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGATTCAATAGGACATCCCCTCTCGTGcDNA Template Length1779
Forward cDNA Template Probeshow
AAGATGCGCTCCCAGCTCAGAGCATAGCGTGGTGTTTCAGGGCAGAGGCACTTCTGTGGGGTGGAGGAGGATGGACATG
GTGCTGCCGGACCTCCAGGACACCGAAGCAACAAAATTCAATAGGACNTCCCNTCTCTTGCCCCGGNANTTTGCTTGCT
CCNNTGGAANCNCCNNTTCTCCCCNNTGCCNTGNAAAGGCANTGGCAGGAGNAAACCCACCAGGNAATTGACNCTGTNA
CAAANCCNTCGNTGGCNNTGCAGGGAANTANTGGAAGGGGNCACCAAGGCAAAAANNTNTNACCNTCNCNCCCAGGACT
TGAANNTCCTTGNTCCAANCCNTGCACAGGAANCACATTGGGAACCCTTTGGAAGGCAAACCACCCAAANTCNTGNTGC
NTGGNTGGAAAANNTNCANCCAGGCCAACNCCNCGGCAANCCAAAAAGNTCACNTCCANNTNTGGNCAACAAAAAANNT
TGCAAAAAACTTGNTGTTACCCGGCAANCNTTNAACCAAAACCCCCTTTNCNTAAAAAAANTNTANTCNTATNTAAATT
CAATTGNTCACCAGNACGGNNTCNTCCCCCGGAAGNAAAATTGCCNTNTNANTTCANTAACCAAANTTNAAGGCCCATT
CNTCNCCCCCANCNCGGNCNCACNTCNTCTTCANACCNTNTNTNCTTCNTCCATGNTNAACNTNNTCCGGCAANTGNTG
NCNTTGAAGGCNTCGGGGAACACGNCCAAAAACAGGGGTTCGAAGGCCAGGGNCACCATGTTNTCTTGCANCANCNTCA
ATTCCANNTCTTTNTTGAATAGGNAAGGNAANGAAACCAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Unlabeled
 
7-12
stage 7
stage 7
stage 7
stage 9
stage 10
stage 12
Area Opaca
Blood Islands
Extraembryonic Mesoderm
Forebrain
Head Mesenchyme
Heart
Heart Tube
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Sinus Venosus
 
13-18
stage 13
stage 13
stage 16
stage 17
Anterior/Second Heart Field
Ectoderm
Endocardium
Eye
Foregut
Heart Tube
Intermediate Mesoderm
Sinus Venosus
Somites
 
19-24
stage 21
stage 22
stage 24
Anterior/Second Heart Field
Eye
Head Mesenchyme
Heart
Somites
Widespread Expression
 

Mouse

EmageMGI:103270
MGI GXDMGI:103270

Frog

Xenbase982674

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-090807-3
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