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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CDX2
caudal type homeobox 2

Gene

Official Symbol	CDX2
Official Full Name	caudal type homeobox 2
CGNC ID	12839
also known as	homeobox protein CDX-2\|caudal type homeo box transcription factor 2\|caudal type homeobox transcription factor 2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204311
Polypeptide	NP_989642

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1045			MIM:600297
Mouse	12591	ENSMUSG00000029646	All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4)	MGI:88361
Xenopus	394817, 735025			483305
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374205
Ensembl Gene
KEGG	gga:374205

Entry 1

GEISHA Id	CDX2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGTCGGAGAGGCAGGTGAAAATC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCCCAACAGCATCGCTCAGACC	cDNA Template Length	506
Forward cDNA Template Probe	show `CGCCGATCCTCGAGATTCACTGGGGAGTGCCACGCTCCCCTTACACCTAACAAAGGCCAGGGTAAAAAATATCCTTTTA AAAATGAAAGGGAAAATTCCCACGAAAGAAAACCCTAATAACCTTAATAACCCCCAAACCGCGGTTCCCCGGACGAAAC CCGCTCACTGTACATCTGTACACACGGGCGCTGCAGTGTATTGGGGGCGCTCCCCCTGTGGCCCCCGGGGCGGATCCGG CCCCCGAGTTTCGGCTGCCCCGTTTACAAAATACTTCTAGAAAAATTACTCTCCCTCCGCCCCAAGGATTAGGAAACCA ATTTTTCCCCGGCCTTAAAGAAAAAAA`

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Early Mesoderm
Extraembryonic Mesoderm
Primitive Streak

7-12

stage 8

stage 9

stage 10

stage 11

Extraembryonic Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak

13-18

stage 18

Foregut

19-24

stage 20

stage 22

stage 24

Duodenum
Foregut
Midgut
Sclerotome
Stomach

Entry 2

GEISHA Id	CDX2.Pernaute.2010	Data Source	Publication
Complete cDNA Template Probe	show GGGGCCCCGCGGCCACAGCGGGAGCGGCCCCAATGCACTGCAGCGCCGTGTGTACAGATGTACAGTGAGCGCGTCTCGT CCGGGGAACCGCGGCTTCGGTGTTATTAATGTTATTATGGTTTTCTTTCGTCGGTATTTTTCCTTTTATTTTTTATTTT TTTTTTTTTTTACCCGGGCCTTGGTTAGGTGTAAGGGGAGCGTGGCACTCCCCAGTGAATCTCAGGGATCGGCGCGAAG GTCTGAGCGATGCTGTGGGGCTGACGATGAATTTTATGGGGAAAGAAAGAAAGAAAAAATTAAAGCACATGGTTTTTAT ATTATATTTTTAAATTTTATATTTCCCTTTTGGGGTTACGGGGTCGCCACGTGAAAATTGTGCAAAGGCGTCCGTAAGG GGCTCAAAGCAGACCAGGGTGAGCGGGGTTACAGGGTGTGCGGCGGGAAAGGGCCCCGGGTTCAGCCACCTCCATAAAA CTCGTGTACGCCCGGGTGCTGAGGGCCACGCGGACGAGAGAAGGGGCAGAAGGGAAGCCCTCGTGAAATTGGGACCCAG ACCACGCGGGGATGAGGATCCCGTGGTGTGCAGAGAGCTGCCAGAGAGCCCAAATGTGTGGTCCACAGGCAGTGACCCC GGTGGTCACTCCCGCGGGACAACCAGGCCTGGATATGAGGCAGCTGGGGTGCCCCAGGGGGCTCAGGTTTACAGAAGCG CCTACATGCGGAGTCCCCCAGCACCGGCTTAACACACACCCGGGAGCCGAAAAACCATCAGGGGGAGTCCATGGGCCAA TTCCC
Citation	Pernaute B, Cañon S, Crespo M, Fernandez-Tresguerres B, Rayon T, Manzanares M. Comparison of extraembryonic expression of Eomes and Cdx2 in pregastrulation chick and mouse embryo unveils regulatory changes along evolution. Dev Dyn. 2010 Feb;239(2):620-9. doi: 10.1002/dvdy.22176.
Copyright	Copyright © 2009 Wiley-Liss, Inc.
Comments	The cDNA template used to generate the probe was obtained from EST Clone ID: ChEST626o23 using the information provided in the publication.

Stage

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Location (click to highlight)

Comments (click to highlight)

1-2

stage 1

stage 2

Area Opaca
Unlabeled

embryo stage = EGX-X

Entry 3

GEISHA Id	CDX2.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCCTTTGGTGTGTCTGGGCCATTACTAATAGAGCCTTGTAAACAATCGTTAATCATGTAAGCGCTGCCGGCCATCGCCT TCGGACCGGGAGCGCTCGGCGGCGGCGAACTGCGCGGGGCCGCGGCCCCTCCGCCTGCCCCCTCCCCGCCGCGGGAGCC CGGCCCCGGGCGGCGGCGCTCCGACGGCCCCGGCAGCGGCGCTCCGACGGCCCCAGCAGCATGCCGAGAGCGGCCGCCG GGGCCCCGCCAGCATGTACGTGAGCTACCTCCTGGACAAGGACGGGCCCATGTACCCCGGCCCCGTTCGCCACTCGGGG GGGCTCAACCTGGCGGCGCAGAACTTCGTGGGCGCCGCGCAATACGCGGACTACGGCGGCTACCATGTGAACCTCGACG GCGCGCAGTCCCCCGGGCCGGCCTGGCCCGCGCCCTACGCCGCTCCTCTCCGCGACGACTGGGGGGCCTACGGGCAGGG AGCCCCTCCGCCCGCCGCCGCCGCCGCCGTGCACGGCCTCAACGGCGGCTCCCCCGCCGCAGCGATGGCCTACAGCCCC GCCGACTTCCACCACCACCACCACCACCACCCGCACGCCCACCACCACGCCGGCCCCGCGCCGCACTGCTCCGCCGGGG GGATGCAGCCTCTCGGCGCCGCCCCCGCCGCCGCCGCCGCCTCCGCCGCCCCCGAGCCGCTGTCCCCCGGCGGGCAGCG CCGCGGCCTCTGCGAGTGGGTGAGGAAACCGGCGCAGGCCCCGCTCGGTAGCCAAGTCAAAACCAGGACGAAGGACAAA TACCGCGTGGTGTACACGGACCACCAGCGGTTGGAGCTGGAGAAGGAGTTCCACTACAGCCGCTATATCACCATCCGGA GGAAAGCTGAGCTGGCCTCCAGCCTGGGGCTGTCGGAGAGGCAGGTGAAAATCTGGTTCCAGAACCGTCGGGCGAAGGA GAGGAAGATCAACAAGAAGAAGCTGCAGCAGGCGCAGCCCGGCGCCGCGGAGCCGCTCAGCCCCACCGCCCCTCCGCTT CCCGGCCCCGCGGCCGCACCGCCACCCGCCGGGCTGGGCCCCGCCGCCCCGCAGTGACAGCGGCCCCGGCCGAGCGCAG GGACTGCACGGACCGCGGAGGGACGGCCGGGCCGGGCCGGGGCCGGAGGGGCCCCGCGGCCACAGCGGGAGCGGCCCCA ATGCACTGCAGCGCCGTGTGTACAGATGTACAGTGAGCGCGTCTCGTCCGGGGAACCGCGGCTTCGGTGTTATTAATGT TATTATGGTTTTCTTTCGTCGGTATTTTTCCTTTTATTTTTTATTTTTATTTTTTTTACCCTGGCCTTTGTTAGGTGTA AGGGGAGCGTGGCACTCCCCAGTGAATCTCAGGGATCGGCGCGAAGGTCTGAGCGATGCTGTTGGGCTGACGATGAATT TTATTGGGAAAGAAAGAAAGAAAAAATTAAAGCACATTGGTTTTTT
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204311).