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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ATF3
activating transcription factor 3

Gene

Official Symbol	ATF3
Official Full Name	activating transcription factor 3
CGNC ID	7459
also known as	cyclic AMP-dependent transcription factor ATF-3
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI

Sequence Information

Genomic
RNA	XM_419429
Polypeptide	XP_419429

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	467	ENSG00000162772		MIM:603148
Mouse	11910	ENSMUSG00000026628	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:109384
Xenopus	100494437, 447311			6085250
Zebrafish	393939	ENSDARG00000007823	ZDB-GENE-040426-728	ZFIN:ZDB-GENE-040426-728

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	421369
Ensembl Gene
KEGG	gga:421369

Entry 1

GEISHA Id	ATF3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATTCAGCGCCTCCGCAATTGTCC
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGGCTTTCCCTGACAGCCACAAGGA	cDNA Template Length	911
Forward cDNA Template Probe	show CCCCCGGGCCCTCACAGGNAAAGTNTGTCCATCCAGCACAGCGGGTATGTACCATGTGCATCATCGAAGTCATAGTGTT CTAGCACAAACGTCGTGAGTGCAGATACTGTATACTAGCAGAGAGCTAAATCTTCTGAAGCTGTTGTCTGTAGCTCCTA GGAACAGCATGTATGACAGGTGCAAAACCTATTATGAGGCAGAAGGCTCTTCAGTTGGACCGAGACCAGATCTTCCGAG GGGAAGAATCTCTGACAAGCCAAAAATGATTTGTTCTGCTTAAGAAAGCGATCTGCCCTTCCTAAACGCTCTTTACTAT TAGAATCCTACACATAAGTCAGATCCTCTGTGGATTCTGTTGCTGTTAAAACATACTAGAAATATTTCCACATTTTCCG TATCACTTAACCTTGTAATGTTCCTTCTTTGATCTGTTGAATAAAAAGATTCCTTTCATCTTCAGGTGTCCTTCCATTT TGTGCCCGGACTATACAGGTGGGCCTGTGAAGATTTAGCATGTATATCAAATGCTGCTTCTCATTCTTTAGCTCTTCAA TCTGGGCTTTTAATTCCGCATTGATAGTCTCCAGCTTTTCTGATTCTTTCTGCAAACATTCTGTTTTTTCCTTCTTTTT GTTTCGGCACTTTGCAGCAGCAATTTTGTTCCTTTCCCTTCTTCGCTTTTTTCTTTCATCCTCTTCAGGAGAAAACTCC GTTTTCATGATCGATGTTTCCATCGGCCTTTCGGACACTGTCACCGTATCCAAAGTAGAAGACATCCTGTGGGACTGAC GTTTGTTTTGGATGGCGAATCTAAGTTCCTCTTTCACCAGTGGGGTTAGATTTGTGAAATCATCAAACCCCAGTGACCC TGCAGGGGACAAAGTGGGGACAATTGCGGAGGCGCTGAATATTCTGCGGCCGCAGCCTTTTAAAAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Early Mesoderm
Germinal Crescent
Headfold
Lateral Plate Mesoderm

7-12

stage 8

stage 9

stage 10

stage 11

Anterior Intestinal Portal
Anterior/Second Heart Field
Intermediate Mesoderm
Lateral Plate Mesoderm

13-18

stage 13

stage 16

stage 17

Anterior Intestinal Portal
Blood Vessels
Gut
Intermediate Mesoderm
Lateral Plate Mesoderm
Nephric Ducts
Pharyngeal Arches and Clefts

19-24

stage 21

stage 23

Gut
Nephric Ducts
Nephric Tubules
Outflow Tract
Pharyngeal Arches and Clefts
Tail

stage 25

Gut
Liver
Nephric Ducts

Entry 2

GEISHA Id	ATF3.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATTTGACAAGTCCTAGTAGGTGTGACAAAGAAAGGTTTCTTGCAAACTACCCATGTAGCTAAGTTGGTATTTTAGGAGC TGGAACCCCACCTATTATCCTTTGGGAAATACAGTGTTTCCTTGCATTCAATAGAGCATTTTGTACCATCACTTGGCAA CTGGGTGAATTGGACCCACTGTAAAGAGGGAAGTAACTACGAAGGGATTTTGATACGGTTTTGCCCAAGCAAAGAACTG CAGGACTGAATCCCAGGTTCATGAATCATGAAAAGTTTAAAATAAACCAAAATCATCTGGGATCTAATCCTACAAGCCT TAACCCTCACCGACACAAGAGGTTCCATGGCCTGTAGTGATCTGGTTATACAGATGGCTGTCAGGAGTAAGATGTGGAC AAGGCTTTTTCCGTCCTTGTCAGGATTGCTTCCTTTTGCCAGATGATTCAGAGGGAAAAATTATGATTGCAGCTACTTT TATTTTATGTTTGGGTGGTAACTACAGTCAATCAAAAGTGTTACTTAGAATCTAAAGGAGACAAGAGTTCTGATGTAGT GAATAATTGTTCTCATTTTTTATTAAATACTAACCTTAGATGTTTCTGAACTGGTAGAAGAGCTGCTGGACAATACAGT TGGAGCTACGAGTGTTTAAATTCTGATGTTTCTGTGAAATTCTCAGATTGGTTTAATCCTACGAAATATATCCTTACAA TTTTTTGGTAAAAGAAAATATCCTTATTTATCACTAATATCATAATGAGTAAAGTTAATAAATACTGCAAGCAGATAA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.