GEISHA - A Chicken Embryo Gene Expression Database
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CNTN3
contactin 3

Gene
Official SymbolCNTN3
Official Full Namecontactin 3
CGNC ID5947
also known ascontactin-3, contactin-3|contactin 3 (plasmacytoma associated)
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNAXM_414433
PolypeptideXP_414433
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly40553FBgn0037240
Human5067ENSG00000113805MIM:601325
Mouse18488ENSMUSG00000030075MGI:99534
Xenopus
Zebrafish100000688ENSDARG00000013647ZDB-GENE-090312-57, ZDB-GENE-081030-10, ZDB-GENE-130530-645ZFIN:ZDB-GENE-090312-57, ZFIN:ZDB-GENE-081030-10, ZFIN:ZDB-GENE-130530-645
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene416101
Ensembl Gene
KEGGgga:416101
GEISHA IdCNTN3.Yamagato.2012Data SourcePublication
Complete cDNA Template Probeshow
ATGGACCCTGAGAGCTCACGGACGAAGATGAGAAGCACTGTATCCGTGCGAGAAGGACAGGGAGTGGTGCTGCTCTGCG
GAACGCCGCCCCGTGCGGGAGAGTTGTCATTTGCTTGGATCTTCAACGAGTATCCATCATTTGTCCAAGAGGACAGCCG
GCGATTTGTGTCTCAGGAGACTGGTCACCTCTACATCGCCAAAGTGGAGCCATCAGATGTGGGAAATTACACCTGTGTC
GTAACCAGCACTGTGACAAACAGCCAGGTCCTCGGGTCACCAACCCCTCTCGTGCTGCGCACTGATGGTGTGATGGGAG
AATACGAACCCAAAATAGAAGTTCAGTTTCCTGAGACACTTCCTGCAGCGAAAGGCTCAACTGTGAAACTGGAATGCTT
TGCACTAGGAAACCCTGTGCCTCAGATTAACTGGAGAAGAACTGACGGTATGCCATTTCCGAGCAAAATAAAGCTAAGG
AAATCCAATGGCATGATTGAAATACCTAATTTCCAGCAAGAGGATGCAGGATTGTATGAATGTATTACTGAAAATTCAA
GAGGAAAAAACATTGCAAGAGGACGTCTCACTTACTACGCAAAACCACACTGGATCCAGATGATAAAAGATACTGAAAT
TGCCGTAGAGGATACCTTATACTGGGATTGCAGAGCAAGTGGCAAGCCAAAACCATCATATAGGTGGCTGAAGAATGGA
GAACAGCTGTCAGTAGAGGGAAGGATCCAGATTGAAAATGGCGCACTTACAATATCGAGTCTAAATCTGACAGATTCTG
GCAGATACCAGTGCATAGCTGAAAATAAACACGGTGTCATCTATTCGAGTGCAGAGCTCAGGGTTGTAGCTTCTGCTCC
AGACTTTTCCAAGAATCCAATGAAGAAAATGATTCAGGTTCAGATCGGCAGCACAGTTGATTTTGAATGCAAACCAAAA
GCTTCCCCCAAGGCCAGATGTTCCTGGAAGAAGGGAGGTGAGCAGCTACACGAAAATGAAAGAATCACATTATTAAAGG
ACGGAGGGCTAAGAATAACCAATGTGACCAAAGTTGATGCTGGAAGCTACACTTGTGTGGCAACAAACCAGTTTGGAAC
AGCCAGTGGGACGACAAACTTAGTAGTTACAGAGCCAACAAGGATCATTTTGGCACCTTCGAACATGGATGTCACTGTT
GGAGAAAGTGTCATCTTGCCTTGCCAGGTTCAGCACGATCCTATACTGGACATCAGCTTCACATGGTATTTCAATGGGA
CGCTCACTGACTTCAAAAAAGATGCCTCTCATTTTGAGAAGGTTGGAGGGAGTGCATCAGGAGATTTGATGATTAGGAA
CATCCAGCTGAAACACAGTGGAAAATACGTTTGTATGGTGAAGACAGAAGTAGACAGTGTGGCATCTGCAGCCGACCTT
ATAGTACGAGGCTCACCTGGGCCCCCCGAACACGTGAGAGTGGATGAAATAACCGATACCACAGCTCAGATCTCCTGGC
AAGAAGGCACAGATAATCACAGCCCAGTGACTGCTTACACCATACAAGCAAGAACACCTTTCTCGGTTGGCTGGCAGCG
AGTTACCACAGTTCCAGACGTGATTGATGGAAATACGTTTACAACCACAGTGGTGGATTTAAATCCTTGGGTCGAATAC
GAATTTCGTGTAGTTGCCAGTAACAAAATAGGAGGTGGAGAACCTAGTTTACCCTCAGAAAAAGTAAGAACTGAAGAGG
CAGTTCCTGAAATTCCCCCAGCTGAAGTCAGTGGGGGAGGCGGCAGCAGGTCTGAACTGGTCATAACATGGGATCCCAT
CCCCGAGGAGTTACAGAATGGAGAAGGGTTTGGATATGTCGTCGCTTTTCGCCCCTTTGGCACCACAACATGGATACAG
ACTGTAGTCACCTCTCCTGACACACCCAGATACGTCTTCAGGAACGAAAGCATCCTGCCGTTTTCACCATATGAAGTCA
AAGTTGGTGTCTATAACAATAAAGGAGAAGGGCCGTTCAGTTCAATAACCACCGTTTTTTCAGCTGAAGAAGAGCCTAC
CGTAGCCCCCTCTGGTGTGTCCGTGACAAGCCTGTCCTCCTCTGTCATCGAAGTCTCCTGGAAAGCCATTCCCTGGAAG
ATGAGTAGTGGAAGGCTACTGGGTTATGAGGTTAGGTACTGGAATAATGGAGGAAAAGAAGAATCTTCAAACAGAGTCA
AAGCTGCAGGGAATGAAACATCAATAAGAATAACAGGTTTGAAGAGCAACTTAGCATACTACACAGCTGTCCGTGCCTA
CAACAGTGCTGGAGCAGGTCCCTTCAGTGCCACAGTGAATGCTACCACCAAGAAGACACCGCCCAGTCAGCCACCAGGA
AACGTTGTGTGGAACGTTACTGACTCCAGAGTAATCCTCAACTGGGAAGAAGTAAGAGCCATGGAGAACGAGTCTGAGG
TGACTGGGTATAAGGTTCTGTACAGGACAAGCGGTCAGAACAATATGAATGTGCTGAACACAGACAAAACAACAGCTGA
ACTTCTGCTCCCGTTTAATGAAGATTACATTATAGAAGTAAAAGCAACAACTGAAGGTGGAGATGGCACTAGCAGTGAT
CAGATCCTGATTCCCAGACTAGCTAGTATGGATGCAAGAGGCTCTGGTCCGTCAACCTTGAATATCTTCAGTCTATCCA
GCATCTTACCGACAGTGTTTTCCTTCACTCTTAATTCGGTGTTGTGA
CitationYamagata M, Sanes JR. Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins. J Neurosci. 2012 Oct 10;32(41):14402-14. 10.1523/JNEUROSCI.3193-12.2012.
CopyrightCopyright © 2012 the authors
CommentsAccording to the authors, "Because a full-length chick cntn3 sequence was not available in GenBank, we generated a cDNA encoding a chimeric protein by fusing 381 nt of 5′ and 102 nt of 3′ mouse cntn3 sequence to the central 2601 nt of chick cntn3." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# XM_414433.3).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-41
stage 40
stage 40
stage 41
stage 41
stage 41
stage 41
stage 41
Retina
Double labeled in situs: CNTN3(green): CNTN5(red)
Double labeled in situs: CNTN2(red):CNTN3(green)
Double labeled in situs: CNTN3(green):CNTN4(red)
Doubled labeled in situs: CNTN1(green):CNTN3(red)

Mouse

EmageMGI:99534
MGI GXDMGI:99534

Frog

Xenbase

Fruit Fly

BDGPFBgn0037240

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-090312-57, ZDB-GENE-081030-10, ZDB-GENE-130530-645
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