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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SOX11
SRY-box 11

Gene

Official Symbol	SOX11
Official Full Name	SRY-box 11
CGNC ID	12274
also known as	transcription factor SOX-11\|SRY (sex determining region Y)-box 11\|Sox11 transcription factor\|cSox11, Sox11, Gallus gallus SRY (sex determining region Y)-box 11 (SOX11)
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205187
Polypeptide	NP_990518

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	6664	ENSG00000176887		MIM:600898
Mouse	20666		All phenotypic alleles (2):Targeted, other(2)	MGI:98359
Xenopus	493415, 399440, 100216330			483417
Zebrafish	30602, 30603	ENSDARG00000077811, ENSDARG00000095743	ZDB-GENE-980526-395, ZDB-GENE-980526-466	ZFIN:ZDB-GENE-980526-395, ZFIN:ZDB-GENE-980526-466

Gene Ontology

Molecular Function	DNA binding
Biological Process	cell differentiation, nervous system development, positive regulation of canonical Wnt signaling pathway, more...
Cellular Component	nucleus

Links to other databases

Entrez Gene	396104
Ensembl Gene
KEGG	gga:396104

Entry 1

GEISHA Id	Sox11.Logan.2002	Data Source	Publication
Complete cDNA Template Probe	show TGATAAAGGCGGTGGGCTGGGCGACGGCGGGGGCCGGGCGCAACCATTGGCGTTGCCGGGAGTGATGTCACCCATATGA AACGCTGATAACGCGTCGGGTGCGGAGCCGCGAGTTTTGCAGAAGGGGCAGCGCGCGCGGCGGGGCTAGGCGGGCCGGC GGCGAGGCCGGGGCAGAGCGCGGCGCCCAGCACAGCCCAGCCGCGCCCAGCCCCAGCCCGGCCGTGCCGAGCCGTGCTG CGCTGCGGGCAGAGGTCCCCCGGCCGGCGGTACGGTACAGCGCAGCGCCCGGTTCGCAGGGCAAGGTGCGGCGGTGGGA GGGGGCGGCGGTCGGCGCGGAGCGGAGCGCCGCGGGGGAGCCCAGCGATGGTACAGCAGGCGGAGAGCGCGGAGAGCGA GAGCAACCTGCCCCGGGAGGCGATGGACACCGAAGAGGGCGAGTTCATGGCTTGCAGCCCGGTGGCTCTGGACGAGAGC GATCCGGACTGGTGCAAAACGGCGTCGGGGCACATCAAGCGACCGATGAACGCTTTCATGGTGTGGTCTAAGATCGAGA GGAGAAAAATCATGGAGCAGTCGCCGGACATGCACAACGCGGAGATCTCCAAGCGCCTGGGCAAGCGGTGGAAAATGCT GAAGGACAGCGAGAAGATCCCCTTCATCCGGGAGGCGGAGAGGCTGCGGCTCAAGCACATGGCCGATTACCCCGACTAC AAGTACCGGCCCAGGAAAAAGCCCAAAATGGACCCCTCGGCCAAGCCCAACGCCGGCCAGAGCCCCGAGAAGAACGCTC CCGGCGGCGGCAGCAAGAGCGCCAAGAGCTCGGGCAAGAAGTGCAGCAAGCTGAAGGCCGCCGCCGCCTCGCCCCCCAA GCCCGGCGCCAAAGCCGCCCCTCACGGGGACTACGCGGGGGACGAGTACGTCTTCGGCGCGCTGAAAGTCAGCAGCAAG GCGGTCAAGTGCGTTTTCGTGGACGAGGAGGAGGAGGACGAGGAGGACGAGGACGAGCTGCAGCTGCGGATCAAGCAGG AGGCGGACGACGAGGAGGAGGACGAGGAGCCGGGCCCGCAGCAGCTGCGGCGGTACAACGTGGCCAAAGTGCCGGCCAG CCCCACCTTGAGCTCCTCGGCGGAGTCCACCGAGGGGGCGAGCCTCTACGAGGAGGTGCGGGGCGCGGCGGGCGGCGGC AGACTCTACTACAGCTTCAAGAACATCACCAAGCAGGGCCCGCCGCCGCCGCAGCCGCCCGCCGGCCTCTCCCCCGCCT CCGTCCCGCTCCATCTCCACCTCGTCGGCCGGCAGCGAGGAGGCGGACGACCTCCTGTTCGACCTCAGCCTCAACTTCT CGCAGCATGGCCACGCCGCCGCCGAGCTGGGGGCGGGGCCGCCGCCGGCAACCTCTCCCTCTCGCTGGTGGACAAGGAC CTGGACTCGTTCAGCGAGGGCAGCCTCGGCTCCCACTTCGAGTTCCCCGACTACTGCACCCCGGAGCTGAGCGAGATGA TCGCGGGCGACTGGCTGGAGGCCAACTTCTCCGACCTGGTGTTCACGTACTGAGCGGGCGGAGGCGGCGACGGGAGCGG CGGATGCCGTGGTGATGGTGGTGGTGGTGGTGGTGATGATGATGATGCTTAAAAAGAAAAGCTCTTTAAAAAAAAAAAA AAAAAATCCTGATGTTAGTTCGAGCCCGGAGTTGTGAATTTTTTTTTTAATTTTTAATTTTTTTGTGTGTTTTTTTTTT TTGTTACATTTGGTGATCACAACAACAACAGCAAAGGGAAATGGGAATGGGGGAAAAATGCTACAGAAGGGCGCTGTTC GAAGCTTGGCGGTCTCTGATGGAAGGCTGGAAGATGGTCTGCGAAGAAGTCTTTTGGCAGCACAACTGTTACTCAAGGG GGTTTGTGGATTTTTTTTTTTTTTCCCGTGAGAGATCTTAAAGAACTGTTCTGATTTTTTTAATTATTTTTTATTTTTT CC
Citation	Logan, C, Millar, C, Bharadia, V, Rouleau, K. Onset of Tlx-3 expression in the chick cerebellar cortex correlates with the morphological development of fissures and delineates a posterior transverse boundary. J Comp Neurol. 2002 Jun 24;448(2):138-49.
Copyright	Onset of Tlx-3 expression in the chick cerebellar cortex correlates with the morphological development of fissures and delineates a posterior transverse boundary, Logan, C, Millar, C, Bharadia, V, and Rouleau, K; Copyright © (2002 Wiley-Liss); This material is used by permission of Wiley-Liss, Inc., a subsidiary of John Wiley & Sons, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize the 2kb probe. The sequence below was obtained from NCBI (acc # NM_205187.1)

Stage

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31-40

stage 38

stage 40

Midbrain

cerebellum

Entry 2

GEISHA Id	SOX11.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGGTGCGGAGCCGCGAGTTTTGCAGAAGGGGCAGCGCGCGCGGCGGGGCTAGGCGGGCCGGCGGCGAGGCCGGGGCAGA GCGCGGCGCCCAGCACAGCCCAGCCGCGCCCAGCCCCAGCCCGGCCGTGCCGAGCCGTGCTGCGCTGCGGGCAGAGGTC CCCCGGCCGGCGGTACGGTACAGCGCAGCGCCCGGTTCGCAGGGCAAGGTGCGGCGGTGGGAGGGGGCGGCGGTCGGCG CGGAGCGGAGCGCCGCGGGGGAGCCCAGCGATGGTACAGCAGGCGGAGAGCGCGGAGAGCGAGAGCAACCTGCCCCGGG AGGCGATGGACACCGAAGAGGGCGAGTTCATGGCTTGCAGCCCGGTGGCTCTGGACGAGAGCGATCCGGACTGGTGCAA AACGGCGTCGGGGCACATCAAGCGACCGATGAACGCTTTCATGGTGTGGTCTAAGATCGAGAGGAGAAAAATCATGGAG CAGTCGCCGGACATGCACAACGCGGAGATCTCCAAGCGCCTGGGCAAGCGGTGGAAAATGCTGAAGGACAGCGAGAAGA TCCCCTTCATCCGGGAGGCGGAGAGGCTGCGGCTCAAGCACATGGCCGATTACCCCGACTACAAGTACCGGCCCAGGAA AAAGCCCAAAATGGACCCCTCGGCCAAGCCCAACGCCGGCCAGAGCCCCGAGAAGAACGCTCCCGGCGGCGGCAGCAAG AGCGCCAAGAGCTCGGGCAAGAAGTGCAGCAAGCTGAAGGCCGCCGCCGCCTCGCCCCCCAAGCCCGGCGCCAAAGCCG CCCCTCACGGGGACTACGCGGGGGACGAGTACGTCTTCGGCGCGCTGAAAGTCAGCAGCAAGGCGGTCAAGTGCGTTTT CGTGGACGAGGAGGAGGAGGACGAGGAGGACGAGGACGAGCTGCAGCTGCGGATCAAGCAGGAGGCGGACGACGAGGAG GAGGACGAGGAGCCGGGCCCGCAGCAGCTGCGGCGGTACAACGTGGCCAAAGTGCCGGCCAGCCCCACCTTGAGCTCCT CGGCGGAGTCCACCGAGGGGGCGAGCCTCTACGAGGAGGTGCGGGGCGCGGCGGGCGGCGGCAGACTCTACTACAGCTT CAAGAACATCACCAAGCAGGGCCCGCCGCCGCCGCAGCCGCCCGCCGGCCTCTCCCCCGCCTCGTCCCGCTCCATCTCC ACCTCGTCGGCCGGCAGCGAGGAGGCGGACGACCTCCTGTTCGACCTCAGCCTCAACTTCTCGCAGCATGGCCACGCCG CCGCCGAGCTGGGGGCGGGGGCCGCCGCCGGCAACCTCTCCCTCTCGCTGGTGGACAAGGACCTGGACTCGTTCAGCGA GGGCAGCCTCGGCTCCCACTTCGAGTTCCCCGACTACTGCACCCCGGAGCTGAGCGAGATGATCGCGGGCGACTGGCTG GAGGCCAACTTCTCCGACCTGGTGTTCACGTACTGAGCGGGCGGAGGCGGCGACGGGGAGCGGCGGATGCCGGCGGTGG TGATGGTGGTGGTGATGATGATGATGATGCTTAAAAAGAAAAAGTCTTCTTTAAAAAAAAAAAAA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001396047 ).