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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PAX5
paired box 5

Gene

Official Symbol	PAX5
Official Full Name	paired box 5
CGNC ID	49160
also known as	Pax5B, paired box protein Pax-5\|Pax5B with a deletion of exon 8 protein\|paired box gene 5 (B-cell lineage specific activator)\|paired box protein Pax-5A\|paired box protein Pax-5B
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204424
Polypeptide	NP_989755

Gene Expression

In Situ Hybridization

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	5079	ENSG00000196092	MIM:167414	MIM:167414
Mouse	18507	ENSMUSG00000014030	All phenotypic alleles (8):Targeted, other(8)	MGI:97489
Xenopus	100493222, 378499			479875
Zebrafish	60636	ENSDARG00000037383	ZDB-GENE-001030-2	ZFIN:ZDB-GENE-001030-2

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	387330
Ensembl Gene
KEGG	gga:387330

GEISHA Id	PAX5.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AAAAGAAAAGGGAAGGAAGGGC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGTGAATAGGTCTCCACGCATCTG	cDNA Template Length	781
Forward cDNA Template Probe	show ATTCGAGAAACTCTACCCGGGAGGATGGCCATTGGGTACTGGAGGTTCCTGAATACCTTCATCACGCTTGCGCTTGTTG CTCTCGGTGCCGGGAGAGGCGATGCCCAGGATCCCACTGATGGAGTAGGACGAGCCGGCGGAGTCAGTGCTGACAGAGG ACACCTGGGTAACGGAGCCTGTGGAGGCTATGCTGTGACTGGAGACTGGGACTTGCTGATTGGGCGGCTGCTGCACCTT TGTCCGTATGATCCTGTTAATTGAACTGACGCTGGGCACGGTGTCGTTATCGCACACTCGCTCCGCGAGGAGTCTGTCC CTGATCTCCCAGGCAAACATGGTGGGATTTTGGCGTTTGTACTCTGCAATTTTTTCGACAACTTTGGGTGTGGCGACCT TTGGTTTTGATCCTCCAATCACTCCAGGCTTAATGCTCCCGGTTTCATAATACCTGCCGAGTATTTTGCTGACGCAGCC GTGGCTGACGCGGAGCTGCCTGGAGATGTCGCACGGCCTCACCCCCTGGTGCGCCAGCTCCACGATCCGCTGCCGGACG ACGTCGGGCAGGGGGCGGCCATTCACAAAAACGCCCCCCAGCTGGTTCACACCTCCGTGTCCTGTGCGCCCGGGCCGCG GGGCCGCGTACATCTTCTCCAAATCCATTGCGATCCTGGAGGAGTCGGTGGAAGGAAACAGGAAAAGTTTGTCCGTAGT GTGCTGCTGCCTGCCTCTCGCCCTTCCTTCCNTTTTNCTTTTAA

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

7-12

stage 8

stage 10

stage 11

stage 11

stage 11

stage 11

stage 11

Brainstem Nuclei
Hindbrain

13-18

stage 17

stage 18

Brainstem Nuclei
Forebrain
Isthmus/MHB
Midbrain

19-24

stage 21

stage 21

stage 22

stage 22

stage 24

stage 24

stage 24

Forebrain
Isthmus/MHB
Midbrain
Spinal Cord

25

stage 25

Forebrain
Midbrain
Spinal Cord

Mouse

Emage	MGI:97489
MGI GXD	MGI:97489

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN	ZDB-GENE-001030-2

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