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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HAPLN1
hyaluronan and proteoglycan link protein 1

Gene

Official Symbol	HAPLN1
Official Full Name	hyaluronan and proteoglycan link protein 1
CGNC ID	49825
also known as	hyaluronan and proteoglycan link protein 1\|cartilage link protein\|cartilage-linking protein 1\|proteoglycan link protein, Hyaluronan and proteoglycan link protein 1 precursor, Proteoglycan link protein, Cartilage link protein
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205482
Polypeptide	NP_990813

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1404	ENSG00000145681		MIM:115435
Mouse	12950	ENSMUSG00000021613	All phenotypic alleles (3):Targeted, knock-out(3)	MGI:1337006
Xenopus	100490017			6037476
Zebrafish	569074, 493635	ENSDARG00000068516, ENSDARG00000089769	ZDB-GENE-050920-1, ZDB-GENE-050302-175	ZFIN:ZDB-GENE-050920-1, ZFIN:ZDB-GENE-050302-175

Gene Ontology

Molecular Function	hyaluronic acid binding
Biological Process	cell adhesion
Cellular Component	proteinaceous extracellular matrix

Links to other databases

Entrez Gene	396475
Ensembl Gene	ENSGALG00000015627
KEGG	gga:396475

Entry 1

GEISHA Id	I44	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGGGCACTCTGCAGTGAGGGATGCTGAACAGGCTTTGAGCTCGCACCCGAACTCGCTTGAAGGAATGGAAGGGCAGTGA AGAAGATTCTTGTGACTGTGAAGATGACAAGTCTACTCTTTCTGGTGCTGATTTCTGTCTGCTGGGCAGAACCTCATCC TGACAACTCAAGCCTGGAGCATGAGAGGATTATTCACATCCAAGAAGAAAATGGACCCCGCCTACTTGTGGTAGCAGAA CAAGCTAAGATCTTCTCTCAGCGAGGTGGCAACGTCACACTGCCTTGTAAATTTTACCATGAACACACATCAACAGCTG GCTCAGGAACCCACAAAATCCGGGTCAAGTGGACCAAACTCACCTCAGATTACCTCAAAGAAGTGGATGTCTTTGTCGC AATGGGACACCACAGAAAGAGCTACGGAAAGTATCAGGGCAGAGTGTTTCTGAGGGAAAGCAGTGAGAACGATGCCTCT CTTATAATCACAAATATAATGCTGGAGGATTATGGGAGATACAAGTGCGAAGTGATTGAAGGATTAGAGGACGACACAG CAGTGGTAGCTCTGAATTTGGAAGGTGTTGTTTTCCCCTATTCTCCACGTCTGGGTCGTTACAACCTAAACTTCCATGA GGCTCAGCAAGCTTGCCTGGACCAGGACTCCATCATTGCCTCCTTCGACCAGCTCTACGAGGCCTGGAGGTCAGGGCTG GACTGGTGCAATGCTGGCTGGCTCAGTGATGGTTCAGTGCAGTACCCTATCACCAAGCCCAGGGAGCCCTGTGGAGGGA AGAATACGGTGCCCCGTGTCAGAAACTATGGCTTCTGGGATAAAGAGAGGAGCCGATATAATGTTTTCTGCTTTACTTC AAACTTCAATGGTCGTTTTTACTACCTAATACACCCAACCAAGCTGACCTATGATGAAGCCGTGCAGGCCTGCCTGAAG GATGGCGCTCAGATTGCCAAGGTTGGGCAGATATTCGCTGCCTGGAAGCTCCTTGGTTATGACCGCTGTGATGCCGGCT GGCTGGCAGACGGCAGCGTCCGCTACCCCATCTCCAGACCCAGAAAGCGCTGCAGCCCCAACGAAGCTGCCGTCCGCTT TGTAGGCTTTCCTGATAAAAAGCACAAGCTGTATGGTGTCTACTGTTTCAGAGCTTACAACTGAAAATACCTAGAGCTG CAACAGTCTTTAATTCATTAAGAACATGTGAAATATTTCGATATGAACTCGTGCAAGTTACCAAAACTGTGATAAACCT TTCTTACTTACTGTAGAGTCATTTTCATAAACCAAAACCATTAATTTGTTTTTGTTTCTGTTTAAATATTTTTGTAAAA GTATCATTCCATAGATATTTAAAAATAATATAATTTAATGGAAGCTCTAGGTAAGAAGAGCCAAATTCTTTAAGCTACG TCATCCCAACAAAATATAATTTTCATGAATGGGGCATGCAATAGAGCTTGACAATTGCTAGGACACAATTATGGAATGT AAGGCTACTCAAAGCAGAAGCTTTTAAAAGCACAAATTTTACATGTTTGTACCCGTTTGAGATACACTGCAAATTGATT GTATCTGGAGTTTTGAATTAAGATGTTTTTGTTTATAGGGGTCAGTGAGGTTTTGCAAAAAATGAAAATT

Stage

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4-6

stage 4

stage 6

Area Pellucida
Extraembryonic

7-12

stage 11

Extraembryonic
Surface Ectoderm

13-18

stage 15

Extraembryonic
Hindbrain
Lateral Plate Mesoderm
Paraxial Mesoderm
Spinal Cord
Surface Ectoderm

19-24

stage 21

Extraembryonic

stage 25

Extraembryonic

Entry 2

GEISHA Id	CRTL1.Colas.2003	Data Source	Publication
Complete cDNA Template Probe	show GCGCACACCAACTTAAGGTGAGCACCATAAACTTCCTCTGCACTTCGCTGTCCTGTTTCAAACTGTTGGAGAGTTCTGA GCGCATCTCGACTTGGGAGCTCCACACAAGTGAAGAAGATTCTTGTGACTGTGAAGATGACAAGTCTACTCTTTCTGGT GCTGATTTCTGTCTGCTGGGCAGAACCTCATCCTGACAACTCAAGCCTGGAGCATGAGAGGATTATTCACATCCAAGAA GAAAATGGACCCCGCCTACTTGTGGTAGCAGAACAAGCTAAGATCTTCTCTCAGCGAGGTGGCAACGTCACACTGCCTT GTAAATTTTACCATGAACACACATCAACAGCTGGCTCAGGAACCCACAAAATCCGGGTCAAGTGGACCAAACTCACCTC AGATTACCTCAAAGAAGTGGATGTCTTTGTCGCAATGGGACACCACAGAAAGAGCTACGGAAAGTATCAGGGCAGAGTG TTTCTGAGGGAAAGCAGTGAGAACGATGCCTCTCTTATAATCACGAATATAATGCTGGAGGATTATGGGAGATACAAGT GCGAAGTGATTGAAGGATTAGAGGACGACACAGCAGTGGTAGCTCTGAATTTGGAAGGTGTTGTTTTCCCCTATTCTCC ACGTCTGGGTCGTTACAACCTAAACTTCCATGAGGCTCAGCAAGCTTGCCTGGACCAGGACTCCATCATTGCCTCCTTC GACCAGCTCTACGAGGCCTGGAGGTCAGGGCTGGACTGGTGCAATGCTGGCTGGCTCAGTGATGGTTCAGTGCAGTACC CTATCACCAAGCCCAGAGAGCCCTGTGGAGGGAAGAATACGGTGCCCGGTGTCAGAAACTATGGCTTCTGGGATAAAGA GAGGAGCCGATATGATGTTTTCTGCTTTACTTCAAACTTCAATGGTCGTTTTTACTACCTAATACACCCAACCAAGCTG ACCTATGATGAAGCCGTGCAGGCCTGCCTGAAGGATGGCGCTCAGATTGCCAAGGTTGGGCAGATATTCGCTGCCTGGA AGCTCCTTGGTTATGACCGCTGTGATGCCGGCTGGCTGGCAGACGGCAGCGTCCGCTACCCCATCTCCAGACCCAGAAA GCGCTGCAGCCCCAACGAGGCTGCCGTCCGCTTTGTAGGCTTTCCTGATAAAAAGCACAAGCTGTATGGTGTCTACTGT TTCAGAGCTTACAACTGAAAATACCTAGAGCTGCAACAGTCTTTAATTCATTAAGAACATGTGAAATATTTCGATATGA ACTCGTGCAAGTTACCAAAACTGTGATAAACCTTTCTTACTTACTGTAGAGTCATTTTCATAAACCAAAACCATTAATT TGTTTTTGTTTCTGTTTAAATATTTTTGTAAAAGTATCATTCCATAGATATTTAAAAATAATATAAGTTTAATGGAAGC TCTAGGTAAGAAGAGCCAAATTCTTTAAGCTACGTCATCCCAACAAAATATAATTTTCATGAATGGGGCATGCAATAGA GCTTGACAATTGCTAGGACACAATTATGGAATGTAAGGCTACTCAAAGCAGAAGCTTTTAAAAGCACAAATTTTACATG TTTGTACCCGTTTGAGATACACAGCAAATTGATTGTATCTGGAGTTTTGAATTAAGATGTTTTTGTTTATAGGGGTCAG TGAGGTTTTGCAAAAAATAAAAATTAAAAAAAAAAAAAAAAAAAAAAAATATAATATTTAATATTTCTTAAGCTATTTA CACATCACAAGAAAATAAAAAATTGGAAAAAAAAATCAAATGATCAAGTCTTAGAAGAAGATTATTGAATAAAATCTGA AACCAGCTATTAAGGTTTAGAAGAGAAGAAGTACTTTATTTCCTTACATCTTATCTGTATCTAAATATACATCTGTTTT TTAAACTATCAATG
Citation	Colas JF, Schoenwolf GC. Localization of cartilage linking protein 1 during primary neurulation in the chick embryo. Brain Res Dev Brain Res. 2003 Mar 14;141(1-2):141-8.
Copyright	Copyright 2003 Elsevier Science B.V.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # M13212).