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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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GJD2
gap junction protein delta 2

Gene

Official Symbol	GJD2
Official Full Name	gap junction protein delta 2
CGNC ID	7480
also known as	Cx35.1, gap junction delta-2 protein\|connexin 35.1\|connexin 36\|gap junction channel-forming protein\|gap junction membrane channel protein alpha 9\|gap junction protein, delta 2, 36kDa
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204582
Polypeptide	NP_989913

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	57369			MIM:607058
Mouse	14617	ENSMUSG00000068615	All phenotypic alleles (7):Targeted, knock-out(2) Targeted, other(5)	MGI:1334209
Xenopus	100496736			489802
Zebrafish	378444		ZDB-GENE-030911-1, ZDB-GENE-111020-17	ZFIN:ZDB-GENE-030911-1, ZFIN:ZDB-GENE-111020-17

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395273
Ensembl Gene
KEGG	gga:395273

Entry 1

GEISHA Id	GJD2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-CCACCAAAGAGGCAGAACC-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGGCAGCTAGTTCAGTAAGTGC-3’	cDNA Template Length	621
Complete cDNA Template Probe	show CCACCAAAGAGGCAGAACCAGACTGCTTAGAAGTGAAGGAGATCCCCAATCCTGCGATCAGAACTACAAAATCAAAGAT GAGGAGGCAAGAAGGCATTTCTCGATTTTATATCATCCAAGTGGTCTTTCGAAATGCCCTAGAGATTGGATTCTTAGTC GGGCAGTATTTTCTGTATGGATTCAATGTCCCTTCCATGTACGAATGTGACAGATACCCTTGCATTAAAGAAGTAGAGT GCTATGTCTCTAGACCCACTGAGAAGACTGTGTTCTTGGTGTTCATGTTTGCTGTCAGTGGCATATGTGTGGTGCTCAA TTTGGCAGAACTGAACCACTTGGGCTGGAGAAAGATCAAAATGGCAGTGAGAGGAGTACAGGCAAAAAGGAAATCCATA TACGAAATCAGAAATAAGGACCTGCCAAGAATGAGCATGCCTAACTTTGGCAGGACTCAGTCAAGTGACTCAGCTTATG TGTGAGGCTGTGACAGAACTGAAACTTGGTGCCAGGTGGAACAGACCCAGACACCATTAGAGAAAGGTACATTGCTTAG GCAAGCATTTTATCAAACCACCAAGAAAGCCATTAAGGTATTGGATCTGCACTTACTGAACTAGCTGC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Unlabeled

13-18

stage 16

stage 18

Unlabeled

19-24

stage 24

Blood Vessels
Heart
Pancreas

stage 25

Atria
Blood Vessels
Head Mesenchyme

Entry 2

GEISHA Id	CX36.Berthoud.2004	Data Source	Publication
Complete cDNA Template Probe	show AGGAAGAAAGGGGTAGGAAGAAGTGAAGAGATCCCCTCCGCTTGCCAAAGTCTTTGTCTCCGGATGAACAGCGATGGGG GAATGGACTATTCTAGAGAGGCTACTGGAAGCTGCCGTGCAGCAGCACTCTACTATGATAGGGAGGATCCTGCTGACCG TGGTGGTGATCTTCAGGATCCTCATTGTGGCCATTGTAGGGGAGACGGTGTACGATGACGAGCAAACTATGTTTGTCTG TAATACGCTGCAGCCAGGCTGCAATCAGGCTTGTTACGACCAAGCTTTCCCTATTTCTCACATAAGGTACTGGGTGTTC CAGATCATCATGGTGTGCACTCCCAGCCTGTGCTTCATAACGTACTCTGTTCACCAGTCTGCTAAGCAGAGGGAACGGA GGTACTCCACTGTCTTCCTCACCTTGGAGAGAGACCAGGATTCAATGAAGCGTGAGGACAGTAAGAAAATCAAGAACAC GATTGTCAATGGGGTGCTGCAGAACACTGAGAACTCCACCAAAGAGGCAGAACCAGACTGCTTAGAAGTGAAGGAGATC CCCAATCCTGCGATCAGAACTACAAAATCAAAGATGAGGAGGCAAGAAGGCATTTCTCGATTTTATATCATCCAAGTGG TCTTTCGAAATGCCCTAGAGATTGGATTCTTAGTCGGGCAGTATTTTCTGTATGGATTCAATGTCCCTTCCATGTACGA ATGTGACAGATACCCTTGCATTAAAGAAGTAGAGTGCTATGTCTCTAGACCCACTGAGAAGACTGTGTTCTTGGTGTTC ATGTTTGCTGTCAGTGGCATTTGTGTGGTGCTCAATTTGGCAGAACTGAACCACTTGGGCTGGAGAAAGATCAAAATGG CAGTGAGAGGAGTGCAGGCAAAAAGGAAATCCATATACGAAATCAGAAATAAGGACCTGCCAAGAATGAGCATGCCTAA CTTTGGCAGGACTCAGTCAAGTGACTCAGCTTATGTGTGAGGCTGTGACAGAACTGAAACTTGGTGCCAGGTGGAACAG ACCCAGACACCATTAGAGAAAGGTACATTGCTTAGGCAAGCATTTTATCAAACCACCAAGAAAGCCATTAAGGTATTGG ATCTGCACTTACTGAACTAGCTGCAAAAATGCAGTGCTATGTAAAAGAC
Citation	Berthoud VM, Singh R, Minogue PJ, Ragsdale CW, Beyer EC. Highly restricted pattern of connexin36 expression in chick somite development. Anat Embryol (Berl). 2004 Nov;209(1):11-8.
Copyright	© Springer-Verlag 2004
Comments	The paper gives the accession number AF458098, which is now called NM_204582.1

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

Pancreas
Somites

19-24

stage 24

Blood Vessels
Myotome
Somites

double labeled

Entry 3

GEISHA Id	CX36.Hasan.2010	Data Source	Publication
Complete cDNA Template Probe	show AGGAAGAAAGGGGTAGGAAGAAGTGAAGAGATCCCCTCCGCTTGCCAAAGTCTTTGTCTCCGGATGAACAGCGATGGGG GAATGGACTATTCTAGAGAGGCTACTGGAAGCTGCCGTGCAGCAGCACTCTACTATGATAGGGAGGATCCTGCTGACCG TGGTGGTGATCTTCAGGATCCTCATTGTGGCCATTGTAGGGGAGACGGTGTACGATGACGAGCAAACTATGTTTGTCTG TAATACGCTGCAGCCAGGCTGCAATCAGGCTTGTTACGACCAAGCTTTCCCTATTTCTCACATAAGGTACTGGGTGTTC CAGATCATCATGGTGTGCACTCCCAGCCTGTGCTTCATAACGTACTCTGTTCACCAGTCTGCTAAGCAGAGGGAACGGA GGTACTCCACTGTCTTCCTCACCTTGGAGAGAGACCAGGATTCAATGAAGCGTGAGGACAGTAAGAAAATCAAGAACAC GATTGTCAATGGGGTGCTGCAGAACACTGAGAACTCCACCAAAGAGGCAGAACCAGACTGCTTAGAAGTGAAGGAGATC CCCAATCCTGCGATCAGAACTACAAAATCAAAGATGAGGAGGCAAGAAGGCATTTCTCGATTTTATATCATCCAAGTGG TCTTTCGAAATGCCCTAGAGATTGGATTCTTAGTCGGGCAGTATTTTCTGTATGGATTCAATGTCCCTTCCATGTACGA ATGTGACAGATACCCTTGCATTAAAGAAGTAGAGTGCTATGTCTCTAGACCCACTGAGAAGACTGTGTTCTTGGTGTTC ATGTTTGCTGTCAGTGGCATTTGTGTGGTGCTCAATTTGGCAGAACTGAACCACTTGGGCTGGAGAAAGATCAAAATGG CAGTGAGAGGAGTGCAGGCAAAAAGGAAATCCATATACGAAATCAGAAATAAGGACCTGCCAAGAATGAGCATGCCTAA CTTTGGCAGGACTCAGTCAAGTGACTCAGCTTATGTGTGAGGCTGTGACAGAACTGAAACTTGGTGCCAGGTGGAACAG ACCCAGACACCATTAGAGAAAGGTACATTGCTTAGGCAAGCATTTTATCAAACCACCAAGAAAGCCATTAAGGTATTGG ATCTGCACTTACTGAACTAGCTGCAAAAATGCAGTGCTATGTAAAAGAC
Citation	Hasan KB, Agarwala S, Ragsdale CW. PHOX2A regulation of oculomotor complex nucleogenesis. Development. 2010 Apr;137(7):1205-13.
Copyright	Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by Dr. Ragsdale.
Comments	An insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (AF458098).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Midbrain

Additional anatomy: somatic and visceral motoneuron subnuclei, oculomotor complex,

Entry 4

GEISHA Id	GJD2.Anderson.2021	Data Source	Direct Submission
Complete cDNA Template Probe	show AACATAAATACCAAGAACACAGTCTTCTCAGTGGGTCTAGAGACATAGCACTCTACTTCTTTAATGCAAGGGTATCTGT CACATTCGTACATGGAAGGGACATTGAATCCATACAGAAAATACTGCCCGACTAAGAATCCAATCTCTAGGGCATTTCG AAAGACCACTTGGATGATATAAAATCGAGAAATGCCTTCTTGCCTCCTCATCTTTGATTTTGTAGTTCTGATCGCAGGA TTGGGGATCTCCTTCACTTCTAAGCAGTCTGGTTCTGCCTCTTTGGTGGAGTTCTCAGTGTTCTGCAGCACCCCATTGA CAATCGTGTTCTTGATTTTCTTACTGTCCTCACGCTTCATTGAATCCTGGTCTCTCTCCAAGGTGAGGAAGACAGTGGA GTACCTCCGTTCCCTCTGCTTAGCAGACTGGTGAACAGAGTACGTTATGAAGCACAGGCTGGGAGTGCACACCATGATG ATCTGGAACACCCAGTACCTTATGTGAGAAATAGGGAAAGCTTGGTCGTAACAAGCCTGATTGCAGCCTGGCTGCAGCG TATTACAGACGAACATGGTCTGCTCGTCGTCGTACAC
Comments	Images and probe sequence provided by Claire Anderson. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Atria
Intermediate Mesoderm
Somites

Entry 5

GEISHA Id	GJD2.Anderson.2019	Data Source	Publication
Complete cDNA Template Probe	show GGTTCCGCCGCGCCGCGGCACGAGCCGAGCGGGCCGGGCCGGGCTCGGCCGCCGCAGAGCCCGGAGTAGAGTCGGGCCG GGCCGAACCGGGCAGAGCCGAGCCGAGAGTCCTCGGAAGGGCTGCCGCGTCCAGCTGTCTTCCTACTACCGGACTGCAA GCGGTAGAGGGAGGTTTCTCTCGTTCTATTTTTTATTTTTTATTTTTTTTTCTTTCTCCATCCCTTGCAACACAACAAA ACGAAAAGAAAAAAGAAAAAAAAAAAAGGGAGGGGGGAGGAAGAAAGGGGTAGGAAGAAGTGAAGAGATCCCCTCCGCT TGCCAAAGTCTTTGTCTCCGGATGAACAGCGATGGGGGAATGGACTATTCTAGAGAGGCTACTGGAAGCTGCCGTGCAG CAGCACTCTACTATGATAGGGAGGATCCTGCTGACCGTGGTGGTGATCTTCAGGATCCTCATTGTGGCCATTGTAGGGG AGACGGTGTACGATGACGAGCAAACTATGTTTGTCTGTAATACGCTGCAGCCAGGCTGCAATCAGGCTTGTTACGACCA AGCTTTCCCTATTTCTCACATAAGGTACTGGGTGTTCCAGATCATCATGGTGTGCACTCCCAGCCTGTGCTTCATAACG TACTCTGTTCACCAGTCTGCTAAGCAGAGGGAACGGAGGTACTCCACTGTCTTCCTCACCTTGGAGAGAGACCAGGATT CAATGAAGCGTGAGGACAGTAAGAAAATCAAGAACACGATTGTCAATGGGGTGCTGCAGAACACTGAGAACTCCACCAA AGAGGCAGAACCAGACTGCTTAGAAGTGAAGGAGATCCCCAATCCTGCGATCAGAACTACAAAATCAAAGATGAGGAGG CAAGAAGGCATTTCTCGATTTTATATCATCCAAGTGGTCTTTCGAAATGCCCTAGAGATTGGATTCTTAGTCGGGCAGT ATTTTCTGTATGGATTCAATGTCCCTTCCATGTACGAATGTGACAGATACCCTTGCATTAAAGAAGTAGAGTGCTATGT CTCTAGACCCACTGAGAAGACTGTGTTCTTGGTGTTCATGTTTGCTGTCAGTGGCATATGTGTGGTGCTCAATTTGGCA GAACTGAACCACTTGGGCTGGAGAAAGATCAAAATGGCAGTGAGAGGAGTACAGGCAAAAAGGAAATCCATATACGAAA TCAGAAATAAGGACCTGCCAAGAATGAGCATGCCTAACTTTGGCAGGACTCAGTCAAGTGACTCAGCTTATGTGTGAGG CTGTGACAGAACTGAAACTTGGTGCCAGGTGGAACAGACCCAGACACCATTAGAGAAAGGTACATTGCTTAGGCAAGCA TTTTATCAAACCACCAAGAAAGCCATTAAGGTATTGGATCTGCACTTACTGAACTAGCTGCAAAAATGCAGTGCTATGT AAAAGACTGAAAACAAACAAACAAACAAACAAAAAGACAAAAAACAGCTATAAAACCATGCTTGATCTAGCCTTACAGC TACTATTATTGCTAATTTTCTTTCTAAAGATTGGATGCTATCTGTTGGTGGAGCGGCTTTTTGGTCATCATTAGGATGA GTTTAAAGTTCGGACTGTCTGACTTATCTTTGTAAACATGTAGAATGTTCATATTAAAAATCTGCAAGGATACTCTATA TGGGGTGGGATGGGGTGGGAGAAACTGTTGCGACGCGCAGATGTAAGCATGTTTTAAAAGGAGGGTAATTGCACTGTGA CCACAGCTCAATCAGGACATCTGCTCTCACCTATTTCACGGATGTCTGATGTTATTTTGCTTGTCTACATCACAGAGTT TATTCCTGGTGTGTATTACTAGCTATTTTCTAACATAGTTTGTGCATCATCTAGTTATGCTAAACAATAAATGCTGAAT ATAATTTTGCCATTTATTGTTTGTCTATCCACACACACACCAGAGACCTTAATCATCTTATGTTAGTTGTGATCTACAA AATATATCAGTACATTTCAGTTCATTACCTGATATGTGCACGAATAAGATGGAGTTGGTTCATGCTGGCCAAGTTACGT ACTTACCTACAGTTACCTACGGTGACACCCATACCAAAGGAACAGAGTTCATTGCTTTTAACTGTGATTATATCACCTT CTCTCTGCTCTTATTTATATAAGTGCCATACTTGAAACATCCAACTCTGTACTTAATCAGAAGGTTATCTTGGAATACC AGCTGGAATAAAGTGATTTTATACTCTCCTTTGTTAA
Citation	Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
Copyright	Copyright © 2019 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204582 ).