Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

NTN3
netrin 1

Gene

Official Symbol	NTN3
Official Full Name	netrin 1
CGNC ID	16557
also known as	NTN1, netrin-3, netrin-3\|netrin 3\|netrin-2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001277605
Polypeptide	NP_001264534

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	32400			FBgn0015774
Human	9423	ENSG00000065320		MIM:601614
Mouse	18208	ENSMUSG00000020902	All phenotypic alleles (3):Targeted, knock-out(1) Gene trapped(2)	MGI:105088
Xenopus	779839, 373694			989334
Zebrafish	30227, 30192	ENSDARG00000033733, ENSDARG00000022531	ZDB-GENE-990415-169, ZDB-GENE-990415-168	ZFIN:ZDB-GENE-990415-169, ZFIN:ZDB-GENE-990415-168

Gene Ontology

Molecular Function
Biological Process	myoblast fusion, regulation of transcription, DNA-templated
Cellular Component	proteinaceous extracellular matrix

Links to other databases

Entrez Gene	396387
Ensembl Gene
KEGG	gga:396387

Entry 1

GEISHA Id	Netrin2.Riley.2010	Data Source	Publication
Complete cDNA Template Probe	show TCCTGCGCCTGCTGCTCACCACCAGCGTGCTCCGCCTGGCACGAGCTGCAAACCCCTTCGTGGCTCAGCAGACACCCCC AGACCCCTGCTACGATGAGAGCGGGGCTCCCCGCCGCTGCATCCCCGAGTTCGTCAACGCCGCCTTTGGGAAGGAGGTG CAGGCTTCCAGCACCTGTGGGAAGCCCCCAACACGGCACTGCGATGCCTCGGACCCCCGCCGAGCCCACCCACCCGCCT ACCTGACCGACCTCAACACCGCCGCCAACATGACGTGCTGGCGCTCCGAGACCCTGCACCACCTGCCCCACAACGTCAC CCTCACCCTTTCCCTCGGCAAGAAGTTTGAGGTGGTCTACGTCAGCCTCCAGTTCTGCTCGCCCCGGCCGGAGTCCACC GCCATCTTCAAGTCCATGGACTACGGCAAGACGTGGGTGCCCTACCAGTACTACTCCTCGCAGTGCCGCAAGATCTACG GCAAGCCCAGCAAGGCCACCGTCACCAAGCAGAACGAGCAGGAGGCGCTGTGCACCGATGGCCTCACCGACCTCTACCC GCTCACTGGCGGCCTCATCGCCTTCAGCACGCTCGACGGGCGGCCCTCGGCCCAGGACTTCGACAGCAGCCCTGTGCTG CAGGACTGGGTGACGGCCACCGACATCCGGGTGGTGTTCAGCCGTCCCCACCTCTTCCGCGAGCTGGGGGGCCGCGAGG CTGGCGAGGAGGACGGGGGGGCCGGGGCCACCCCCTACTACTACTCGGTGGGCGAGCTGCAGGTCGGCGGGCGCTGCAA GTGCAACGGGCACGCCTCGCGCTGCGTCAAGGACAAGGAGCAGAAGCTGGTGTGTGACTGCAAGCACAACACCGAGGGG CCCGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCGTGGCAGCGGGCCAGCGCCCGCGAGGCCAACGAGTGCC TGGCCTGCAACTGCAACCTGCACGCTCGGCGCTGCCGCTTCAACATGGAGCTGTATAAGCTGTCCGGCAGGAAGAGCGG CGGCGTTTGCCTCAACTGCCGACACAACACGGCTGGGAGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGGGACCTC AGCAAGTCCATCACGGACCGCAAGGCCTGCAAAGCCTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAGACCTGCAACC AAACAACAGGGCAGTGCCCGTGCAAGGACGGCGTGACCGGCCTCACCTGCAACCGCTGCGCCAAGGGCTTCCAGCAGAG CCGCTCGCCTGTGGCCCCCTGCATCAAGATCCCTGCCATCAACCCGACCTCTCTTGTCACCAGCACGGAGGCACCTGCA GACTGTGACTCCTACTGCAAGCCAGCCAAAGGCAACTACAAGATTAACATGAAGAAGTACTGCAAGAAGGATTACGTGG TCCAAGTGAACATTTTGGAAATGGAGACGGTGGCCAACTGGGCCAAGTTCACCATCAACATCCTCTCTGTCTACAAGTG CCGCGACGAGCGGGTCAAGCGCGGAGACAACTTCTTGTGGATCCACCTCAAGGACCTGTCCTGCAAGTGCCCCAAAATC CAGATCAGCAAGAAGTACCTGGTGATGGGCATCAGCGAGAACTCCACCGACCGGCCGGGACTGATGGCCGACAAGAACA GCCTGGTCATCCAGTGGAGGGACGCCTGGACTCGCCGCCTTCGGAAACTGCAGCGGAGGGAGAAGAAAGGGAAGTGTGT GAAGCCCTGAGGGCCTCGTGCCCCACGCGGGTCCCGGCCCCACTGCACACGCAGACCATGCCCAGAGACTCTGTACATA CATATCGTGTGAACGGACTCTTCTGTCTATAGTGTATATTTTGGCAACGGTTCCCCTTTTTGTGTGCGTGTGCACGCGT GGGTGTGTGCACGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCTCTCAGTGTGTATTAAAAATAAGGCGG TAATGACAAACCTTTAATGAGGAGCAAAGCAGAGGGGGTCCTGTGGGTGCCTGCTGCCTGAAGGAGCTTGAGGGGCTGG TTTCTTGCTCCGGGCGTGCTGTTCCTCACCCTTCTGTCCTACTCTCTCTTTCCCCTTGAGCAAAACCTTCTGCCCAGTG CTGCTGTCTGAGCTCGCGGCTCTCCCTGCTGCAGAGCCCGGTCCCTCTCACGTGCTGCACATGTGCTGCTCTCAGCTCT CTGTGCCCCTTTTCTTGTGCAGCAGAGACGGGAGGTCGGTTTCCTCCATCCCGCTGCACACACGGACCGGCTGGGTGGA GACCATCCAGCGCTGCAGGACCGGCCCCAGGAGCTCCGCTGGGAGAACCAAGTGACCTTTCTCCAGGCCTGATCCTGCA GGACCTCAGCTTTACATGGACTGGTCGTGCCGCCCAGGGGCAGGGCCCATGGAAGTCTTGGGGACAGCCAGGGCTGTTG GCCACCACCCCACAGAGCTGTTCTGAGCAGGGCGCAGGGGTCTGCCTGTCCTGGTGCGTGGTCCAGGTGACCCATCAGG AAAGACCTGCAGATACCCATATTCTCCTCTCGTGCCAGCTCTGCATGCTGCTGTGACCTTGGCCGTGCCAGAGGTGCAG AGGCAGAGGTGGCAGGAAGAGAGGAGAGCTTTCGCTGACCAACCTCCAGTCTTTCATTTCTTCTGCATACTGTATTAGT CTCCAGTTCAAACAGACATCAGTTTCTTTCCACGTTGAGGTTATAGTGGTCTCGATGTAATAAACATGAATGGAAATAA TA
Citation	Riley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53.
Comments	Authors indicated probe was indicated in another reference (NCBI acc# L34550.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 14

stage 18

Isthmus/MHB
Midbrain

19-20

stage 20

Midbrain

Entry 2

GEISHA Id	NETRIN2.Abraira.2010	Data Source	Publication
Complete cDNA Template Probe	show ATGCCGTGCCACCCCTCACTCTGTGCTCTTATCCCAGGGAGGATGGAGGCCCCTCAGCTCCTGCGCCTGCTGCTCACCA CCAGCGTGCTCCGCCTGGCACGAGCTGCAAACCCCTTCGTGGCTCAGCAGACACCCCCAGACCCCTGCTACGATGAGAG CGGGGCTCCCCGCCGCTGCATCCCCGAGTTCGTCAACGCCGCCTTTGGGAAGGAGGTGCAGGCTTCCAGCACCTGTGGG AAGCCCCCAACACGGCACTGCGATGCCTCGGACCCCCGCCGAGCCCACCCACCCGCCTACCTGACCGACCTCAACACCG CCGCCAACATGACGTGCTGGCGCTCCGAGACCCTGCACCACCTGCCCCACAACGTCACCCTCACCCTTTCCCTCGGCAA GAAGTTTGAGGTGGTCTACGTCAGCCTCCAGTTCTGCTCGCCCCGGCCGGAGTCCACCGCCATCTTCAAGTCCATGGAC TACGGCAAGACGTGGGTGCCCTACCAGTACTACTCCTCGCAGTGCCGCAAGATCTACGGCAAGCCCAGCAAGGCCACCG TCACCAAGCAGAACGAGCAGGAGGCGCTGTGCACCGATGGCCTCACCGACCTCTACCCGCTCACTGGCGGCCTCATCGC CTTCAGCACGCTCGACGGGCGGCCCTCGGCCCAGGACTTCGACAGCAGCCCTGTGCTGCAGGACTGGGTGACGGCCACC GACATCCGGGTGGTGTTCAGCCGTCCCCACCTCTTCCGCGAGCTGGGGGGCCGCGAGGCTGGCGAGGAGGACGGGGGGG CCGGGGCCACCCCCTACTACTACTCGGTGGGCGAGCTGCAGGTCGGCGGGCGCTGCAAGTGCAACGGGCACGCCTCGCG CTGCGTCAAGGACAAGGAGCAGAAGCTGGTGTGTGACTGCAAGCACAACACCGAGGGGCCCGAGTGCGACCGCTGCAAG CCCTTCCACTACGACCGGCCGTGGCAGCGGGCCAGCGCCCGCGAGGCCAACGAGTGCCTGGCCTGCAACTGCAACCTGC ACGCTCGGCGCTGCCGCTTCAACATGGAGCTGTATAAGCTGTCCGGCAGGAAGAGCGGCGGCGTTTGCCTCAACTGCCG ACACAACACGGCTGGGAGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGGGACCTCAGCAAGTCCATCACGGACCGC AAGGCCTGCAAAGCCTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAGACCTGCAACCAAACAACAGGGCAGTGCCCGT GCAAGGACGGCGTGACCGGCCTCACCTGCAACCGCTGCGCCAAGGGCTTCCAGCAGAGCCGCTCGCCTGTGGCCCCCTG CATCAAGATCCCTGCCATCAACCCGACCTCTCTTGTCACCAGCACGGAGGCACCTGCAGACTGTGACTCCTACTGCAAG CCAGCCAAAGGCAACTACAAGATTAACATGAAGAAGTACTGCAAGAAGGATTACGTGGTCCAAGTGAACATTTTGGAAA TGGAGACGGTGGCCAACTGGGCCAAGTTCACCATCAACATCCTCTCTGTCTACAAGTGCCGCGACGAGCGGGTCAAGCG CGGAGACAACTTCTTGTGGATCCACCTCAAGGACCTGTCCTGCAAGTGCCCCAAAATCCAGATCAGCAAGAAGTACCTG GTGATGGGCATCAGCGAGAACTCCACCGACCGGCCGGGACTGATGGCCGACAAGAACAGCCTGGTCATCCAGTGGAGGG ACGCCTGGACTCGCCGCCTTCGGAAACTGCAGCGGAGGGAGAAGAAAGGGAAGTGTGTGAAGCCCTGAGGGCCTCGTGC CCCACGCGGGTCCCGGCCCCACTGCACACGCAGACCATGCCCAGAGACTCTGTACATACATATCGTGTGAACGGACTCT TCTGTCTATAGTGTATATTTTGGCAACGGTTCCCCTTTTTGTGTGCGTGTGCACGCGTGGGTGTGTGCACGTGTGTGTG CGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCTCTCAGTGTGTATTAAAAATAAGGCGGTAATGACAAACCTTTAATGAG GAGCAAAGCAGAGGGGGTCCTGTGGGTGCCTGCTGCCTGAAGGAGCTTGAGGGGCTGGTTTCTTGCTCCGGGCGTGCTG TTCCTCACCCTTCTGTCCTACTCTCTCTTTCCCCTTGAGCAAAACCTTCTGCCCAGTGCTGCTGTCTGAGCTCGCGGCT CTCCCTGCTGCAGAGCCCGGTCCCTCTCACGTGCTGCACATGTGCTGCTCTCAGCTCTCTGTGCCCCTTTTCTTGTGCA GCAGAGACGGGAGGTCGGTTTCCTCCATCCCGCTGCACACACGGACCGGCTGGGTGGAGACCATCCAGCGCTGCAGGAC CGGCCCCAGGAGCTCCGCTGGGAGAACCAAGTGACCTTTCTCCAGGCCTGATCCTGCAGGACCTCAGCTTTACATGGAC TGGTCGTGCCGCCCAGGGGCAGGGCCCATGGAAGTCTTGGGGACAGCCAGGGCTGTTGGCCACCACCCCACAGAGCTGT TCTGAGCAGGGCGCAGGGGTCTGCCTGTCCTGGTGCGTGGTCCAGGTGACCCATCAGGAAAGACCTGCAGATACCCATA TTCTCCTCTCGTGCCAGCTCTGCATGCTGCTGTGACCTTGGCCGTGCCAGAGGTGCAGAGGCAGAGGTGGCAGGAAGAG AGGAGAGCTTTCGCTGACCAACCTCCAGTCTTTCATTTCTTCTGCATACTGTATTAGTCTCCAGTTCAAACAGACATCA GTTTCTTTCCACGTTGAGGTTATAGTGGTCTCGATGTAATAAACATGAATGGAAATAATA
Citation	Abraira VE, Satoh T, Fekete DM, Goodrich LV. Vertebrate Lrig3-ErbB interactions occur in vitro but are unlikely to play a role in Lrig3-dependent inner ear morphogenesis. Dev Biol. 2010 Apr 15;340(2):595-604. Epub 2010 Feb 18.
Copyright	Copyright Abraira et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Comments	As insufficient information is provided in the publication to verify the exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (acc # NM_001277605.1)