Geisha

home

contact

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

SDC3
syndecan 3

The human orthologue of this gene is associated
with the following human disease:

Gene

Official Symbol	SDC3
Official Full Name	syndecan 3
CGNC ID	354
also known as	syndecan-3, syndecan-3\|syndecan 3 (N-syndecan)\|syndecan-3 proteoglycan
gene type	protein-coding

Genomic Map

Sequence Information

Gene Expression

In Situ Hybridization

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	9672		MIM:601665	MIM:186357
Mouse	20970	ENSMUSG00000025743	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:1349163
Xenopus	100134998, 378553			490746
Zebrafish	337077	ENSDARG00000088962	ZDB-GENE-030131-9021	ZFIN:ZDB-GENE-030131-9021

Gene Ontology

Molecular Function	cytoskeletal protein binding
Biological Process	cell differentiation, multicellular organismal development
Cellular Component	integral component of membrane

Links to other databases

GEISHA Id	Syndecan3.Singh.2016	Data Source	Publication
Complete cDNA Template Probe	show AAGATAACAGAAGCACCAGTGATCCCCAGCTGGAAAACAACCACCGCCAGTACCACTGCCAGTGACTCCCCCAGTACCA CTTCCACCACCACCACCACGGCTGCTACCACCACCACAACCACCACCACCATCAGCACCACTGTGGCCACCTCCAAGCC CACCACTACCCAGAGGTTCCTGCCTCCCTTTGTCACCAAGGCAGCCACCACCCGGGCCACCACCCTGGAGACGCCCACC ACCTCCATCCCTGAAACCAGTGTCCTGACAGAGGTGACCACATCACGGCTTGTCCCCTCCAGCACAGCCAAGCCGAGGT CCCTGCCAAAACCAAGCACTTCCAGGACTGCAGAACCCACGGAAAAAAGCACTGCCTTGCCTTCCAGCCCCACCACGCT GCCACCCACAGAAGCCCCCCAGGTGGAGCCAGGGGAGTTGACGACAGTCCTCGACAGTGACCTGGAAGTCCCAACCAGT AGTGGCCCCAGCGGGGACTTCGAGATCCAGGAGGAGGAGGAGACAACTCGTCCTGAGCTGGGCAATGAGGTGGTGGCAG TGGTGACACCACCAGCAGCACCGGGGCTGGGCAAGAATGCAGAGCCGGGGCTCATCGACAACACAATAGAGTCGGGCAG CTCGGCATGCTCAGCTCCCCCAGAAAAACATTCCTGGAGAGGAAGGAAGTGTCGATAGCTGTGATTGTCGGCGGTGTGG TGGGAGCCCTCTTTGCTGCCCTTCCTTGTCATGCTGCTCATCTACCGGATTGACGAAGAAGGACGAGGGCCAGTATTAC TTGGAGGAACCCAAACAAGCCAAGGTGACCTAACCAAAAGCCGGACGA
Citation	Singh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31.
Copyright	Copyright © 2015 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST643n6. syndecan3 is also known as SDC3 in NCBI.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-30

stage 28

31-38

stage 31

stage 34

stage 36

stage 38

all

GEISHA Id	SDC3.Cui.2019	Data Source	Publication
Complete cDNA Template Probe	show `GATAACAGAAGCACCAGTGATCCCCAGCTGGAAAACAACCACCGCCAGTACCACTGCCAGTGACTCCCCCAGTACCACC TCCACCACCACCACCACGGCTGCTACCACCACCACAACCACCACCACCATCAGCACCACTGTGGCCACCTCCAAGCCCA CCACTACCCAGAGGTTCCTGCCCCCCTTTGTCACCAAGGCAGCCACCACCCGGGCCACCACCCTGGAGACGCCCACCAC CTCCATCCCTGAAACCAGTGTCCTGACAGAGGTGACCACATCACGGCTTGTCCCCTCCAGCACAGCCAAGCCGAGGTCC CTGCCAAAACCAAGCACTTCCAGGACTGCAGAACCCACGGAAAAAAGCACTGCCTTGCCTTCCAGCCCCACCACGCTGC CACCCACAGAAGCCCCCCAGGTGGAGCCAGGGGAGTTGACGACAGTCCTCGACAGTGACCTGGAAGTC`
Citation	Cui R, Lwigale P. Expression of the heparin-binding growth factors Midkine and pleiotrophin during ocular development. Gene Expr Patterns. 2019 Jun;32:28-37. Epub 2019 Feb 27. DOI: 10.1016/j.gep.2019.02.001.
Copyright	Copyright © 2019 Elsevier B.V.
Comments	The complete cDNA template sequence was obtained from the information provided in the publication as described in Cui et al. 2019.