GEISHA - A Chicken Embryo Gene Expression Database
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IRF7
interferon regulatory factor 7

Gene
Official SymbolIRF7
Official Full Nameinterferon regulatory factor 7
CGNC ID10648
also known asIRF3, interferon regulatory factor 3|IRF-3
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_205372
PolypeptideNP_990703
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3665ENSG00000185507MIM:605047
Mouse54123ENSMUSG00000025498All phenotypic alleles (4):Chemically induced(1) Targeted, knock-out(3) MGI:1859212
Xenopus1004963955996132
Zebrafish393650ENSDARG00000045661ZDB-GENE-040426-1518ZFIN:ZDB-GENE-040426-1518
Gene Ontology
Molecular Functionregulatory region DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processactivation of innate immune response, innate immune response, toll-like receptor 3 signaling pathway, more...toll-like receptor signaling pathway, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene396330
Ensembl GeneENSGALG00000014297
KEGGgga:396330
GEISHA IdIRF7.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
AGCAGGTGCAGCGGGGAGGAGCCTCCTCCCTCAACAGTGGCAACGTCAGCCTGCAGCTCTCTGACTCTTTCAACCTCTT
CGAGCTTATCGAGCAATACCACATGCAGACAGACTGACACTCCCTTCCTGCGTCCCTCCCCCGGCCTCCGCTGTCTTGC
AAAGAGCTTTCTGGCTCCACTGGGTCAGGCTTGGGCTGGTTTCACCGTTACAGAGGAGAAAAGAGCAGCATTGCATCCA
CTCCCTGGGCACATCTTGCAGCCCTGCTCCGGCCCTGAGTGCCGGCTGAAGGTCAACACACCACAGGAGCAGGCAGCAG
TGGGGCCATACTGACCAGCCCAGGAACTCTCCCCTCCTCCAAAAGCTGCTGCAATAAGCTTGTGGTTGGGAAAGCCTTT
CCTCTGACTGCACGGTGCTTCAACCCCACGGCACCAGCGTGGTGTACAGTGGGGTTCATTCCTCCTTCGCTCCCAGGAC
AGTTCCTGTGGACCTTTTCAACAGCTGTCTGGAGTTTTTGGGGATTGTGCTTCTTTACAGATTTACTTTTCTGAAGTTT
NGTAAGTTTAAATATGTTTATATAAAGGTGCTTCTCACGCAAAAA
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Opaca
margin of overgrowth (edge of area opaca)
1-3
stage 3
Germ Cells/PGCs
Primitive Streak
germ wall margin / weak in primitive streak
4-6
stage 6
Area Opaca
Extraembryonic Mesoderm
Neural Plate/Tube
extraembryonic mesoderm
weak in neural plate / area opaca / extraembryonic mesoderm
7-9
stage 9
Extraembryonic Mesoderm
Germ Cells/PGCs
Neural Plate/Tube
Primitive Streak
extraembryonic mesoderm
anterior neural plate / primitive streak / germ wall margin / extraembryonic mesoderm
all
 
  

Mouse

EmageMGI:1859212
MGI GXDMGI:1859212

Frog

Xenbase5996132

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-1518
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