GEISHA - A Chicken Embryo Gene Expression Database
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CUX1
cut like homeobox 1

Gene
Official SymbolCUX1
Official Full Namecut like homeobox 1
CGNC ID
also known asCASP, CUTL1, protein CASP|(clone C8) CASP|cut-like 1, CCAAT displacement protein|homeobox protein cut-like 1-like
gene typeunknown
Genomic Map
 Ensembl ID not known
NCBI
Sequence Information
Genomic
RNA
Polypeptide
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene101749861
Ensembl Gene
KEGG

Entry 1

GEISHA Idpgp1n.pk002.j6Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CCCTCCCTCCCGGCTCCGAACTCCAGCCCCTCTCTCTCTCTCTATCAGCCGCTCACTCTGTCTCAATATGTCTCAAGAT
GGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAGAGAGAACTCGATGCCACA
GCAACAATATTGGCCAACCGGCAAGATGAAAGCGAGCAGTCCAGGAAGAAACTTATCGAGCAAAGTCGGGAGTTCAAGA
AGAACACTCCAGAGGACCTGCGCAAACAGGTAGCTCCACTACTGAAGAGTTTCCAGGGAGAGATTGACGCGTTGGGTAA
AAGAAGCAAAGAAGCAGAGGCAGCCTTCTTGAATGTTTATAAGAGATTAATTGATGTCCCAGATCCAGTTCCAGCTTTG
GATTTAGGACAGCAGCTTCAGCTGAAGGTTCAACGTATGCACGATATTGAAACAGAGAACCAGAAACTTAGGGAAACTC
TAGAGGAATACAACAAAGAATTTGCCGAGGTGAAAAATCAGGAGGTTACAATAAAAGCACTTAAAGAGAAAATCCGAGA
ATATGAACAGACCCTGAAGAACCAAGCTGAGAACATAGCTCTGGAGAAAGAACAAAAACTACAAAATGATTTTGCAGAG
AAGGAGAGAAAATTGCAGGAGACACAGATGTCAACAGCCTCGAAGCTGGAGGAAGCCGAACACAAAGTTCAAGCTTTGC
AAACAGCCTTGGAAAAAACCAGAACAGAACTATTTGATCTGAAAACAAAATACGATGAAGAAACTACTGCAAAGGCTGA
TGAAATCGAGATGATCATGACAGACCTTGAAAGAGCAAATCAGAGGGCAGAGGTGGCTCAAAGAGAGGCAGAAACCTTN
AGGGAGCAGCTCTCGTCAGCTAACAATCTCTCCAACTCG
Commentsno specific expression stages 4-21.
no images

Entry 2

GEISHA IdChEST669d9Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCTGCGTTGAATGTTTATAAGAGATTAATTGATGTCCCAGATCCAGTTCCAGCTTTGGATTTAGGACAGCAGCTTCAGC
TGAAGGTTCAACGTATGCACGATATTGAAACAGAGAACCAGAAACTTAGGGAAACTCTAGAGGAATACAACAAAGAATT
TGCCGAGGTGAAAAATCAGGAGGTTACAATAAAAGCACTTAAAGAGAAAATCCGAGAATATGAACAGACCCTGAAGAAC
CAAGCTGAGAACATAGCTCTGGAGAAAGAACAAAAACTACAAAATGATTTTGCGGAGAAGGAGAGAAAATTGCAGGAGA
CACAGATGTCAACAGCCTCGAAGCTGGAGGAAGCCGAACACAAAGTTCAAGCTTTGCAAACAGCCTTGGAAAAAACCAG
AACAGAACTATTTGATCTGAAAACAAAATACGATGAAGAAACTACTGCAAAGGCTGATGAAATCGAGATGATCATGACA
GACCTTGAAAGAGCAAATCAGAGGGCAGAGGTGGCTCAGAGAGAGGCAGAGACCTTAAGGGAGCAGCTCTCGTCAGCTA
ACAAATCTCTCCAACTCGCTACCCAGATCCAGAAGGCACCTGATGTGGAGCAGGCCATCGAGGTACTGACTGTGAGAGG
CAAGGAGCCATTTCATAAGATGAAGCAGTTCCTGTCGGACGAGCAGAACATCCTGGCTCTTCGCAGCATCCAGGGTAGA
CAAAGAGAGAATCCAGGCCAGAACCTGAACAGACTATTTCAGGAAGTACCGAAACGAAGAAATGGGTCTGAAGGTAATA
TAACCACACGAATCCGAACCACAGAGACTGGCTCTGATGAAGCCATCAAATCCATTCTTGAACAAGCCAAAAGGGAGCT
GCAAGTACAGAAAACAGCTGAGCCGGCTCAGCCGCCTTCTGCATCTAGCAGTGGCAATTCTGATGATGCTATTCGATTC
ATTCTGCAACAGCCCGACGTGAAATGGAGGCACAGCAAGCTGCCCTTGATCCTGCCTAAAAACAACACCTTTGTCTCAA
GCTGACATTTCTATCCTGTCCCC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
stage 18
Amnion
Leg Ectoderm
Surface Ectoderm
Wing Ectoderm
 
19-22
stage 22
stage 22
Amnion
Aorta
Dermatome
Myotome
Somatopleure
Splanchnic Mesoderm
Surface Ectoderm
hand transected

Entry 3

GEISHA IdCux1.Lizarraga.2002Data SourcePublication
Complete cDNA Template Probeshow
ATGCGTTTCGGCGGGGGCCGCGCGGCGGAGTTGTGCCGGAGCGGCGCGGGGACGGAAACGCCGCGCGGGACCCGAAGGG
CAGCGCCGCACGGGCGGTTCGGGCCGGGGTGCGCCGGGCGGTGCGGCGTGTCGGCAAACCGTGCGGTGCAGCGCGGCGA
TGGACCGTTCTGTTCTGTTCTGACAGCGGTGTTTCAGGCTGAGTGCCCTCACGCTGCGCTTCGTGGCCGGCGGTGTTCT
GCGCTGAGAAACGCGGTGCTGTCGGTGTGCGGTGTGGCGGAGGTTGGGGAGTTTGGGGAGCAGATCCGTGATGGGCGAA
GCGTCCAAAATACCACCGAACGACCATTTGTTATTTGCGAGCTGCTTTGTGATGCAAAGGATGGATGGAGGGAGATGGG
TGATCCCAAGTTTCGGTTTGATCCCCCCGAGCTGGAAATAAAGGCTCAGCAGATCCGTATGTGTGTGCTGAGAGAACTC
GATGCCACAGCAACAATATTGGCCAACCGGCAAGATGAAAGCGAGCAGTCCAGGAAGAAACTTATCGAGCAAAGTCGGG
AGTTCAAGAAGAACACTCCAGAGGACCTGCGCAAACAGGTAGCTCCACTACTGAAGAGTTTCCAGGGAGAGATTGACGC
GTTGGGTAAAAGAAGCAAAGAAGCAGAGGCAGCCTTCTTGAATGTTTATAAGAGATTAATTGATGTCCCAGATCCAGTT
CCAGCTTTGGATTTAGGACAGCAGCTTCAGCTGAAGGTTCAACGTATGCACGATATTGAAACAGAGAACCAGAAACTTA
GGGAAACTCTAGAGGAATACAACAAAGAATTTGCCGAGGTGAAAAATCAGGAGGTTACAATAAAAGCACTTAAAGAGAA
AATCCGAGAATATGAACAGACCCTGAAGAACCAAGCTGAGAACATAGCTCTGGAGAAAGAACAAAAACTACAAAATGAT
TTTGCGGAGAAGGAGAGAAAATTGCAGGAGACACAGATGTCAACAGCCTCGAAGCTGGAGGAAGCCGAACACAAAGTTC
AAGCTTTGCAAACAGCCTTGGAAAAAACCAGAACAGAACTATTTGATCTGAAAACAAAATACGATGAAGAAACTACTGC
AAAGGCTGATGAAATCGAGATGATCATGACAGACCTTGAAAGAGCAAATCAGAGGGCAGAGGTGGCTCAGAGAGAGGCA
GAGACCTTAAGGGAGCAGCTCTCGTCAGCTAACAAATCTCTCCAACTCGCTACCCAGATCCAGAAGGCACCTGATGTGG
AGCAGGCCATCGAGGTGCTGACACGATCCAGCCTGGAAGTAGAACTGGCTGCGAAGGAGAGGGAGATTGCCCAGCTCGT
AGAAGATGTCCAGAGACTACAGGGCAGCCTCACCAAGCTGCGGGAGAACTCCAGCAGCCAGATCTCCCAGCTGGAGCAG
CAGCTGACCGCCAAGAACAGCACGCTTAAACAACTGGAAGAAAAACTGAAAGGACAGGCTGATTATGAAGAGGTTAAGA
AAGAATTAAATATATTGAAATCCATGGAGTTTGCACCACCTGAAAGCTCTGGTGCGCAGGATGCATCGAAACCGCTGGA
GGTGCTGCTGCTGGAGAAGAACCGCTCGCTGCAGTCCGAGAACGCCACGCTGCGAATCACAAACAGTGACCTGAGTGGG
TCAGCCAGGAGAAAAGGGAAAGACCAGCCTGAGAGTCAGCGTCCTGCAACCTTGCCGGCTTCCCCTCCTTCTCAGTTGC
TCCGCAACGCGGGGGAGCAGGCTTCCAATACTAATGGTACACACCAGTTCTCACCAACGGGTTTAAGTCAAGACTTTTT
CAGCTCATCCCTGGCAAGCCCCAGCTTACCCCTGGCCTCCACAGGAAAATTTGCACTAAACTCTCTCCTCCAGCGACAG
CTAATGCAGTCCTTCTACTCCAAGGCAATGCAGGAAGCAGGAAGCACAAGCATGATTTTTTCAACAGGTCCTTACAGCA
CAAACTCCATCTCTTCCCAAAGTCCATTACAACAAAGCCCGGATGTAAATGGCATGGCCCCATCTCCCAGCCAGTCAGA
AAGTGCTGGGAGCATCTCCGAAGGCGAGGAGATAGACACGGCCGAAATTGCACGTCAGGTGAAAGAGCAGTTGATCAAG
CACAATATTGGACAGCGGATATTTGGACATTATGTGTTGGGACTGTCGCAAGGGTCTGTGAGTGAGATACTAGCCCGGC
CAAAGCCATGGAATAAACTGACTGTGAGAGGCAAGGAGCCATTTCATAAGATGAAGCAGTTCCTGTCGGACGAGCAGAA
CATCCTGGCTCTTCGCAGCATCCAGGGTAGACAAAGAGAGAATCCAGGCCAGAACCTGAACAGACTATTTCAGGAAGTA
CCGAAACGAAGAAATGGGTCTGAAGGTAATATAACCACACGAATCCGAACCACAGAGACTGGCTCTGATGAAGCCATCA
AATCCATTCTTGAACAAGCCAAAAGGGAGCTGCAAGTACAGAAAACAGCTGAGCCGGCTCAGCCGCCTTCTGCATCTAG
CAGTGGCAATTCTGATGATGCTATTCGATCCATTCTGCAACAAGCCCGACGTGAAATGGAGGCACAGCAGGCTGCCCTT
GATCCTGCCTTAAAAACAACACCTTTGTCTCAAGCTGACATTTCTATCCTGTCCCCCAAACTAGTATCTACATCTGCAA
TGTCTTCGGTTTCCAGCTATCCTCCTTTGGCCATATCCCTGAAGAAACATTCATCTGTTACTGATTCCAGTATCTCTGC
ATTGCAGAACCTCTCTGGGCTCAAAAAGGAGCCGCAGGAGGCGCCTGTTTTAGAGCTCCATGGAATAAGTGATTCTGCC
CAGGGTATGTTGAGGCATGTTAAAAATGAGTTGGGACGTGGTGGTGTTTGGAAGGACCATTGGTGGAATACTGTGCAGC
ATGAGAGAAGAAATACAGCTCTTCCCGAAGATATAAAAGTTGAGGAAGCCAGTGGTGGAAAAGAAAAGGTCAGCAATCA
GACTAGGCCAGATCGTAGCCAGCTCCAAGGACCATCTTCTTCAGAGTATTGGAAAGAGTGGCCAAACGCTGAATCTCCG
TACTCGCAGAGTTCTGAATTGAGCATGACTGGGGCGAGTCGCAGTGAGACACCACAGAATAGCCCCCTCCCTTCATCCC
CTATCGTGTCCTTGTCCAAGCCATCCAAACCTTCAGTTCCTCCTCTGACACCTGAGCAGTATGAGATTTATATGTACCA
GGAAGTGGATACGATAGAACTAACGCGGCAGGTCAAAGAAAAGCTAGCAAAGAATGGCATCTGCCAAAGGATCTTTGGG
GAAAAGGTATTGGGGCTGTCCCAAGGAAGTGTCAGTGACATGCTCTCCAGGCCAAAGCCATGGAGTAAATTGACACAAA
AAGGCCGAGAACCATTTATTCGTATGCAGCTCTGGTTGAATGGTGAGCTGGGACAGTGTGTCCTGCCTGCACAAGGGCA
GCAACAAGGACAAGTCCTTCACTCTGTGACATCATTACAGGATTCCCTACAGCAGGGATGTGCAAGCTCAGAAAGCACT
CCAAAGACTTCTGCCAGTTGCAGTCCTGCTCCTGAATCTCCCATGAGTTCCAGCGAGTCGGTAAAAAGCCTGACAGAAT
TGGTACAGCAGCCCTGTCCTTCTATAGAGACCAATAAGGATGGCAAAGGCCAGGAGCCCAGCGAGCCGCCTGCTTCGGA
ATCCCAGTCCACAACACCTTTGCCACTGTCGGGGCACTCAGCACTCAGCATCCAGGAGCTGGTCGCTATGTCCCCGGAG
CTGGACACCTATGGCATTACTAAAAGGGTCAAGGAAGTGCTAACGGACAACAATCTTGGTCAGCGTTTGTTTGGGGAGA
CAATCCTGGGGCTGACACAAGGCTCTGTCTCAGACCTGCTGGCTCGCCCGAAGCCCTGGCACAAACTGAGTCTGAAGGG
CCGGGAGCCCTTTGTCCGCATGCAGCTGTGGCTGAACGATCCCAACAACGTGGAGAAGCTGATGGATATGAAACGAATG
GAGAAGAAAGCCTACATGAAGCGGCGGCACAGCTCCGTGAGCGACAGTCAGTCGTGCGAGTCTTCCTCCACTGGAATCG
ACTACAGCCAGGGCGCCAGCCCGCAGCCACAGCACCAGCTGAAGAAGCCCCGGGTGGTGCTGGCACCAGAAGAGAAGGA
AGCTCTGAAACGAGCCTACCAGCAAAAGCCATACCCATCACCAAAAACCATTGAGGAACTGGCTACGCAGCTCAACTTG
AAAACCAGCACCGTGATCAACTGGTTCCACAATTACAGGTCTCGCATCCGCCGGGAGCTGTTCATCGAGGAGATCCAAG
CGGGAAGCCAGAGCCAGGCCGGGTCGAACGATTCTCCTTCGGCGCGAAGCAGCAGAGCCGCCCACAGCTCGGAGGGAGA
CAGCTGCGACGGCGTGGACGCGGAGGGCCCACCTGAAGGAAAGCCGAGCGGTCCGGAGGCGGACGAGTACAGCAATGCA
ACCACAAAGTCTCAGGGAGGGCAAGCGGAGTCGGCTCTGGAGGCGGGGGAAGAGGCAGCGCCGGGCGCCCGGCCCACGG
AGCGAGCGGAGCCGCTGCTCGCGGCGGCCGAGGGCCTGGAGGACACTGACGACGAGGGCAGGCCCAGGGCGCCGCGCCA
GGGCTCTCCGGCGAGGTGTCAGCGCTCGGGAGAAGCTCCGGAGACACTGCCCAACTCTGCCACGGAAGGGGACGCCTCT
ACCTCAGCTGCCTCCACCTCAGTCCTTACAGGGGAGAGCTCCTACAAGTCAAAGGAGAGTTCAGAGAAAAGCTCCAGCG
TGCCAAGTACGAGTTCGACGCCGGGCGCAGGCTCGCAGAAGGCCAACTCTCTGCAGAGCTTGTTCAGCTTCTCCGAGGC
CGCGAGCTCCAGGAACACACGAGACAGCTCCTTGAGGAAAAAGAAAGCCGCAAACTTGAACAACATAATCCACCGCTTG
GAGAAGGCCGCCAGCCGGGAGGAGGCTGCCGAGTGGGAGTTTTGAGATTAAAACTCGCCCAACTCTGGAGAGCTGGGAA
GTGAAACTGGACCTCTACTGGTTTTATTGTGTCGCGCACTTATCCGCCCTGCGGGCCACAGGGCAAAAACGCCATAGGC
CAAGGTGCATATAGAAAAACAAAAGGAGCGTTAAGCCCAATTTATGTTTGTGTTTTCGAGGAAGAAAACTGAAATGTGT
AGTCGAGCTTTTTTGTACCCTGAAGTGTTTTTATTATTGCCCTAAGTGATTTCCACGGTTTCTGGAATATCTCATACAG
CTTTGCCTTGTGCCCTCCTATCGGTGTGGGCTTTAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAGGAAAAAAAAA
AAGGAAA
CitationLizarraga G, Lichtler A, Upholt WB, Kosher RA. Studies on the role of Cux1 in regulation of the onset of joint formation in the developing limb. Dev Biol. 2002 Mar 1;243(1):44-54.
CopyrightCopyright © 2002 Elsevier Science (USA). All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below was obtained from NCBI (XM_425393).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 25
stage 27
stage 29
stage 30
stage 30
stage 30
Wing Mesenchyme
Carpal bones
Carpometacarpal joints
Elbow joint
Metacarpophalangeal joints
Wrist joint
31-35
stage 35
Wing Mesenchyme
Interphalangeal joints

Entry 4

GEISHA IdCux1.Singh.2016Data SourcePublication
Complete cDNA Template Probeshow
CTCTATCAGCCGCTCACTCTGTCTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCG
CTTTGATTTACAGCAGCTGCAGAGAGAACTCGATGCCACAGCAACAATATTGGCCAACCGGCAAGATGAAAGCGAGCAG
TCCAGGAAGAAACTTATCGAGCAAAGTCGGGAGTTCAAGAAGAACACTCCAGAGGACCTGCGCAAACAGGTAGCTCCAC
TACTGAAGAGTTTCCAGGGAGAGATTGACGCGTGGGTAAAAGAAGCAAAGAAGCAGAGGCAGCCTTCTTGAATGTTTAT
AAGAGATTAATTGATGTCCCAGATCCAGTTCCAGCTTTGGATTTAGGACAGCAGCTTCAGCTGAAGGTTCAACGTATGC
ACGATATTGAAACAGAGAACCAGAAACTTAGGGAAACTCTAGAGGAATACAACAAAGAATTTGCCGAGGTGAAAAATCA
GGAGGTTACAATAAAAGCACTTAAAGAGAAAATCCGAGAATATGAACAGACCCTGAAGAACCAAGCTGAGAACATAGCT
CTGGAGAAAGAACAAAAACTACAAAATGATTTGCGGAGAAGGAGAGAAAATTGCAGGAGACACAGATGTCAACAGCCTC
GAAGCTGGGAGGAAGCCGAACACAAAGTTCAAGCTTGCAAACAGCCTTGGAAANAACCAGAACAGAACTATTGATCTGA
AAACAAAATACGATGAAGAAACTACTGCAAAGGCTGATGAAATCGAGATGATCT
CitationSingh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31.
CopyrightCopyright © 2015 Elsevier B.V. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information provided in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST387b16.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 28
Limb Buds
 
31-38
stage 31
stage 34
stage 36
stage 38
Limb Buds
 
all
 
  

Mouse

Emage
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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