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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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NKX3-2
NK3 homeobox 2

Gene

Official Symbol	NKX3-2
Official Full Name	NK3 homeobox 2
CGNC ID	48963
also known as	BAPX1, NKX-3.2, homeobox protein Nkx-3.2\|NK class homeoprotein Nkx-3.2\|bagpipe homeobox homolog 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204137
Polypeptide	NP_989468

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	373932
Ensembl Gene
KEGG	gga:373932

Entry 1

GEISHA Id	BAPX1.Nielsen.2001	Data Source	Publication
Complete cDNA Template Probe	show CGGCGGCGGCGGCGGCGGCGCGGCCGGCCGGAGCGGGCGATGCGGGCGCCGAGCTGAAGTTGCGGCGCTTGTCGCTGCT CTCCGCCCGGGGCCGCCGGGCCATGGCCGTCCGCGGCGGCGGCGGCGGCGGCGGCACCGCCCTGACGCCTTTCTCCATC CAGGCCATCCTCAACAAGAAGGAGGAGCGCGCCCGCGGCTGGCGGCTGTGCGCTGCCCGCGCCGAGGCCCCGCCGCCGC CCGCCCCGCGCCCGCCGCCCGCCTGGGACTCGGACTCGGCGCTGAGCGAGGAGCCCGAGAGCGAGCGGCGCTCCGAGGA GGAGAGCGCCGGGGGCAGCGCCCGCCCCCCCGAGGCGGCGGGCAGGGGGGCGGCCGGCGGCGGAGGCGCGGCCCTCGGA GGCGGCGGCGGACGGGACCGGGACCGGGACGGAGCGCGCAGCGACAGCGAAGCGTCGGCCGCCGCCTCAGGTCGCGGCC CGGCCGAGGAGGAGGAGGCGGCGGGCGGGAGGCTGCTGGCGGCCGAGGAGGAGGCGGCGGCGCCGAAGCCGCGCAAGAA GCGCTCCCGCGCCGCCTTCTCCCACGCGCAGGTGTTCGAGCTGGAGCGGCGCTTCAACCACCAGCGCTACCTGTCGGGG CCCGAGCGCGCCGACCTGGCCGCCTCCCTCAAGCTGACCGAGACGCAGGTGAAGATCTGGTTCCAGAACCGCCGCTACA AAACCAAGCGGCGGCAGATGGCAGCCGACCTGCTGGCCGCCGCCCCCGCCGCCAAGAAGGTGGCCGTCAAGGTGCTGGT GCGCGACGACCAGAGACAGTACCAGCCCGGCGAGGTGCTGCGGCCGCCCTCGCTGCTCGCCCTGCAGCCCTCCTACTAC TACCCCTACTACTGCCTGCCCGGCTGGGCCCTGTCCTGCGCCGCGGCCGCCGGCACGCAGTGAGCGCCCCGACGGCACC GCCCCGACGGCAGCGCCGCGGCGCCCCGGACAGTATTTATTGCTATTTTATTGTTATTTTTATTATTAATATTATTCGG ACGGTCGCTCGGCCTCTCCCTATCGCCCCGGCGGCCGAGGACTCGCGGCCGGGCACCGCCTCTCCACGGGATCCACGCT GCGGTGCGGCGGCCGCGGACCGTCTGTTGGTTTGTCTGCTCCGTCCCGCGTCGGATCGGCGGAGACTGACGTGGGAGAC GCAAAGAGAGAGGGGGGAAAGAAAACACCCAAAGCGCCGCGGAACCGAGCGCAGCTCCGAGGAGACGAGAACGGATCCC GGGGGGCTCTGAGAGCGCCGTGAGCGGGGCTGAATGTACGGAGCCTCTCCCACCCCCGGCCGTGTCAGCCCACTGCGAA GGATAACCGTGTCCCGTAGGGTGAGACCCGCCCCAGCGCTCCAGGCTTCTTCTTCTTCTTCTTCTGTTTTATTTCCTGA GATCTTTCCGTGTTCGGGGAGGGAGGATTCTGGATTTTTCGCACTTTCCGGTTGTATTAAAGTTGTTGTTATTTTTATA TTCAATGTGAATATTTCTAGGCAGGCTTTAAAAAAAAAACAGAAAAGAAAACTCGATGTAACGGGAAATGTTAATGCCA TCAGTGCCTTTTGTGCAGTCGTTCTGCAGCCCTCCTCACAAGTGTAATTACGGTCTCTTTCCCTCGAGGTAACCCATCG CTTTGTTTCTTTCTTTCTTTCTTTTTCTCCCTTTAATGGCACTGTGCACTCAACGACGCTATCGACTCCAAATGGATTG TGAATGTGTGTAAGCAGCCCGCTGTACTTTTTTTTTTTTTTTTTTTTTAATTTATAAACGTTACGTTCCCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA
Citation	Nielsen C, Murtaugh LC, Chyung JC, Lassar A, Roberts DJ (2001). Gizzard formation and the role of Bapx1. Dev Biol. 2001 Mar 1;231(1):164-74.
Copyright	Copyright © 2001 Academic Press. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (AB042507).

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

Lateral Plate Mesoderm
Somites

Left Lateral Mesoderm

19-24

stage 23

Gizzard

Presumptive Gizzard
Primitive Anterior Gut Mesoderm

31-36

stage 36

Gizzard
Hindgut

Entry 2

GEISHA Id	NKX3.2.Schneider.1999	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CGGCGGCGGCGGCGGCGGCGCGGCCGGCCGGAGCGGGCGATGCGGGCGCCGAGCTGAAGTTGCGGCGCTTGTCGCTGCT CTCCGCCCGGGGCCGCCGGGCCATGGCCGTCCGCGGCGGCGGCGGCGGCGGCGGCACCGCCCTGACGCCTTTCTCCATC CAGGCCATCCTCAACAAGAAGGAGGAGCGCGCCCGCGGCTGGCGGCTGTGCGCTGCCCGCGCCGAGGCCCCGCCGCCGC CCGCCCCGCGCCCGCCGCCCGCCTGGGACTCGGACTCGGCGCTGAGCGAGGAGCCCGAGAGCGAGCGGCGCTCCGAGGA GGAGAGCGCCGGGGGCAGCGCCCGCCCCCCCGAGGCGGCGGGCAGGGGGGCGGCCGGCGGCGGAGGCGCGGCCCTCGGA GGCGGCGGCGGACGGGACCGGGACCGGGACGGAGCGCGCAGCGACAGCGAAGCGTCGGCCGCCGCCTCAGGTCGCGGCC CGGCCGAGGAGGAGGAGGCGGCGGGCGGGAGGCTGCTGGCGGCCGAGGAGGAGGCGGCGGCGCCGAAGCCGCGCAAGAA GCGCTCCCGCGCCGCCTTCTCCCACGCGCAGGTGTTCGAGCTGGAGCGGCGCTTCAACCACCAGCGCTACCTGTCGGGG CCCGAGCGCGCCGACCTGGCCGCCTCCCTCAAGCTGACCGAGACGCAGGTGAAGATCTGGTTCCAGAACCGCCGCTACA AAACCAAGCGGCGGCAGATGGCAGCCGACCTGCTGGCCGCCGCCCCCGCCGCCAAGAAGGTGGCCGTCAAGGTGCTGGT GCGCGACGACCAGAGACAGTACCAGCCCGGCGAGGTGCTGCGGCCGCCCTCGCTGCTCGCCCTGCAGCCCTCCTACTAC TACCCCTACTACTGCCTGCCCGGCTGGGCCCTGTCCTGCGCCGCGGCCGCCGGCACGCAGTGAGCGCCCCGACGGCACC GCCCCGACGGCAGCGCCGCGGCGCCCCGGACAGTATTTATTGCTATTTTATTGTTATTTTTATTATTAATATTATTCGG ACGGTCGCTCGGCCTCTCCCTATCGCCCCGGCGGCCGAGGACTCGCGGCCGGGCACCGCCTCTCCACGGGATCCACGCT GCGGTGCGGCGGCCGCGGACCGTCTGTTGGTTTGTCTGCTCCGTCCCGCGTCGGATCGGCGGAGACTGACGTGGGAGAC GCAAAGAGAGAGGGGGGAAAGAAAACACCCAAAGCGCCGCGGAACCGAGCGCAGCTCCGAGGAGACGAGAACGGATCCC GGGGGGCTCTGAGAGCGCCGTGAGCGGGGCTGAATGTACGGAGCCTCTCCCACCCCCGGCCGTGTCAGCCCACTGCGAA GGATAACCGTGTCCCGTAGGGTGAGACCCGCCCCAGCGCTCCAGGCTTCTTCTTCTTCTTCTTCTGTTTTATTTCCTGA GATCTTTCCGTGTTCGGGGAGGGAGGATTCTGGATTTTTCGCACTTTCCGGTTGTATTAAAGTTGTTGTTATTTTTATA TTCAATGTGAATATTTCTAGGCAGGCTTTAAAAAAAAAACAGAAAAGAAAACTCGATGTAACGGGAAATGTTAATGCCA TCAGTGCCTTTTGTGCAGTCGTTCTGCAGCCCTCCTCACAAGTGTAATTACGGTCTCTTTCCCTCGAGGTAACCCATCG CTTTGTTTCTTTCTTTCTTTCTTTTTCTCCCTTTAATGGCACTGTGCACTCAACGACGCTATCGACTCCAAATGGATTG TGAATGTGTGTAAGCAGCCCGCTGTACTTTTTTTTTTTTTTTTTTTTTAATTTATAAACGTTACGTTCCCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (Acc. # NM_204137.1).