GEISHA - A Chicken Embryo Gene Expression Database
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RARA
retinoic acid receptor alpha

Gene
Official SymbolRARA
Official Full Nameretinoic acid receptor alpha
CGNC ID4191
also known asRAR-ALPHA1, retinoic acid receptor alpha|RAR-alpha|nuclear receptor subfamily 1 group B member 1|retinoic acid receptor alpha 1 isoform
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_204536
PolypeptideNP_989867
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Functionretinoic acid receptor activity, sequence-specific DNA binding, steroid hormone receptor activity, more...zinc ion binding
Biological Processhindbrain morphogenesis, response to retinoic acid
Cellular Componentnucleus
Links to other databases
Entrez Gene395213
Ensembl Gene
KEGGgga:395213

Entry 1

GEISHA IdRARa.Cui.2003Data SourcePublication
Complete cDNA Template Probeshow
GGAGAACTCGGAGGGCATGGACACGCTGGGGGGGCAGCCGGGCGGTCCCCGCACGGGAGGTTTGGGGCCCCCCCCGGGC
AGCTGCAGCCCCAGCCTCTCGCCGAGCTCCACGCGCAGCAGCCCGGCCACGCACTCGCCGTGACCCACGCCCGGCTGCA
CCAGGACACAGCTTGAGGGGGGGTCCGTCTGCAGCCCC
CitationCui, J, Michaille, JJ, Jiang, W, Zile, MH. Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. Dev Biol. 2003 Aug 15;260(2):496-511.
Copyright"Reprinted from Developmental Biology, 260, Cui, J, Michaille, JJ, Jiang, W, Zile, MH, Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. 496-511, Copyright (2003), with permission from Elsevier". Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsAntisense riboprobes were prepared from chicken RARα (nt 1299–1494). Acc# NM_204536. Actual in situs are on quail embryos.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 5
stage 6
stage 6
Area Pellucida
Widespread Expression
Comparison of several genes
Quail
7-9
stage 7
stage 7
stage 8
stage 9
Neural Plate/Tube
Widespread Expression
Comparison of several genes
Quail

Entry 2

GEISHA IdRARa2.Cui.2003Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGCCGATGTTCGAGGGCGCGGAGGTGGCGGGGCTGCCCCCCCCCGGCCCCCTCCCCCGCATGGATTGCTGCGGGC
CCGGCCGGGGCTGTCTGCTGCCACAGTGCCCCCCCCCGCCCCGCACCGCCCCGCGCCGCGCCCCGCACTGGGGCGCCTC
CGGCCGCTCCGTGGAGACGCAGAGCACCAGCTCAGAGGAGATCGTGCCCAGCCCGCCCTCCCCGCCGCCACTGCCGCGC
ATCTACAAGCCGTGCTTCGTCTGCCAGGACAAATCCTCCGGGTACCACTATGGGGTCAGCGCCTGCGAGGGCTGCAAGG
GCTTCTTCCGCCGCAGCATCCAGAAGAACATGGTGTACACGTGCCACCGGGACAAGAACTGCATCATCAACAAGGTGAC
GCGCAACCGCTGCCAGTACTGCCG
CitationCui, J, Michaille, JJ, Jiang, W, Zile, MH. Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. Dev Biol. 2003 Aug 15;260(2):496-511.
Copyright"Reprinted from Developmental Biology, 260, Cui, J, Michaille, JJ, Jiang, W, Zile, MH, Retinoid receptors and vitamin A deficiency: differential patterns of transcription during early avian development and the rapid induction of RARs by retinoic acid. 496-511, Copyright (2003), with permission from Elsevier". Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsAntisense riboprobes were prepared from chicken RARα2 (nt 1–419) [Michaille et al 1995]. Quail
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 5
stage 6
stage 6
Headfold
Comparison with several genes
Quail
7-11
stage 7
stage 7
stage 8
stage 8
stage 10
stage 10
stage 10
stage 11
Endoderm
Headfold
Neural Crest
Neural Plate/Tube
Splanchnic Mesoderm
Surface Ectoderm
Comparison with several genes
Quail

Entry 3

GEISHA IdRARALPHA.Bayha.2009Data SourcePublication
Complete cDNA Template Probeshow
TGGGGGGGCTCTCCCCTCCCAGCTCGCTGCCCGGCATCCAGCACCGGAGGCCCCGCCATGGCCAGCAACAGCAGCTCCT
GCCCCACGCCCGGGGGGGGGCACCTGAACGGCTACCCCGTCACCCCCTACGCCTTTTTCTTTCCCCACATGCTGGGGGG
GCTCTCCCCTCCCAGCTCGCTGCCCGGCATCCAGCACCAGCTGCCCGTCAGCGGCTACAGCACGCCCTCGCCTGCCACC
GTGGAGACGCAGAGCACCAGCTCAGAGGAGATCGTGCCCAGCCCGCCCTCCCCGCCGCCACTGCCGCGCATCTACAAGC
CGTGCTTCGTCTGCCAGGACAAATCCTCCGGGTACCACTATGGGGTCAGCGCCTGCGAGGGCTGCAAGGGCTTCTTCCG
CCGCAGCATCCAGAAGAACATGGTGTACACGTGCCACCGGGACAAGAACTGCATCATCAACAAGGTGACGCGCAACCGC
TGCCAGTACTGCCGCCTGCAGAAGTGCTTCGAGGTCGGGATGTCCAAGGAGTCCGTCCGCAATGACCGCAATAAGAAGA
AGAAGGACGTGCCGAAGACGGAGTGCTCGGAGAGTTACATCGTCACCCCCGAGGTGGAGGAGCTGATCGAGAAGGTCCG
CAAAGCGCACCAGGAGACGTTCCCTGCGCTGTGCCAGCTGGGCAAATACACCACGAACAACAGCTCGGAGCAGCGCGTG
TCGCTGGACATCGACCTGTGGGACAAATTCAGCGAGCTGTCCACGAAGTGCATCATCAAGACGGTGGAGTTCGCCAAGC
AGCTGCCCGGCTTCACCACGCTCACCATCGCCGACCAGATCACGCTGCTCAAAGCCGCCTGCCTGGACATCCTGATCCT
GCGGATCTGCACGCGCTACACCCCCGAGCAGGACACCATGACCTTCTCGGACGGGCTGACGCTGAACCGCACGCAGATG
CACAACGCCGGCTTCGGGCCGCTCACAGACCTGGTGTTCGCCTTCGCCAATCAGCTGCTGCCGCTGGAGATGGACGACG
CCGAGACCGGACTGCTGAGCGCCATCTGCCTCATCTGCGGGGACCGCCAGGACCTGGAGCAGCCCGACAAGGTGGACAA
ACTGCAGGAGCCGCTGCTGGAGGCGCTGAAGATCTACGTGAGGAAGAGGAGGCCCAACAAACCCCACATGTTCCCCAAA
ATGCTGATGAAGATCACAGATCTCCGCAGCATCAGCGCCAAGGGCGCGGAGCGGGTGATCACACTGAAGATGGAGATCC
CAGGCTCGATGCCGCCGCTCATCCAGGAGATGTTGGAGAACTCGGAGGGCATGGACACGCTGGGGGGGCAGCCGGGCGG
TCCCCGCACGGGAGGTTTGGGGCCCCCCCCGGGCAGCTGCAGCCCCAGCCTCTCGCCGAGCTCCACGCGCAGCAGCCCG
GCCACGCACTCGCCGTGACCCACGCCCGGCTGCACCAGGACACAGCTTGAGGGGGGGTCCGTCTGCAGCCCCCCCCGGG
GCGGACTCCTCGCAGCCCCCCTCGGCACAGCCCCGGGACCCCCACCCGGAG
CitationBayha E, Jørgensen MC, Serup P, Grapin-Botton A. Retinoic acid signaling organizes endodermal organ specification along the entire antero-posterior axis. PLoS One. 2009 Jun 10;4(6):e5845.
Copyrighthttp://creativecommons.org/licenses/by/2.5/
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204536). Also curated by Reed Watts
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Area Opaca
Epiblast
Primitive Streak
Unlabeled
 
7-10
stage 10
stage 10
stage 10
stage 10
stage 10
Anterior Intestinal Portal
Endoderm
neural tube label is not supported by sections

Entry 4

GEISHA IdRARGAMMA.Bayha.2009Data SourcePublication
Complete cDNA Template Probeshow
GAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAACCCAAGAAGCGCGCGCTGCGGCGCCTTTAAGAGCG
CCCCCCCCCCCCCATCCCCTCCGCGGCTCCGCCGTGGCGGGGCCGTGCCCGGTTGGGGCCGCAGCCGCCGCGGGGCCGT
CCCGCGCCGCGTGGCTGCGGTGGGTGCGCGGGACGATGTACGACTGCGTGGAGGCTCTGGCGGTCCCGCGGCGGCTGCA
CGACGTGACCAACCGCGGGGCGTGCGCGCTGCGCAAGGCGGGCTGCGGGCCGCGCTACGGGCCGCGCTGCGGGGCTCTG
CCGTGCGCCTGGCCCGGCGCCGCCCCGCACGGCGCTGAGACGCAGAGCAGCAGCTCGGAGGAGATGGTGCCCAATTCGC
CCTCCCCGCCGCCGCCGCCGCGCGTCTACAAACCGTGCTTCGTCTGCAGCGACAAATCCTCGGGGTACCACTACGGCGT
CAGCTCCTGCGAGGGCTGCAAGGGTTTCTTCCGCCGCAGCATCCAGAAGAACATGGTGTACACGTGCCACCGCGACAAG
AACTGCCAGATCAACAAGGTGACGCGCAACCGCTGCCAGTTCTGCCGCCTGCAGAAGTGCTTCGAGGTCGGCATGTCCA
AGGAAGCCGTGCGCAATGACCGCAATAAGAAGAAGAAGGAGGTGAAGGAGGAGGCGGCCGACAGCCCCGAGCTGAGCCC
GGCGCTGGAGGAGCTGATCCAGAAGGTCAGCAGGGCGCACCAGGAGACCTTCCCCTCACTGTGCCAGCTGGGCAAATAC
ACCATGAGCTCGAGCGCTCAGCACCGCGTGCAGTTGGACCCGGGGCTGTGGGACAAATTCAGCGAGTTGGCCACCAAAT
GCATCATCAAGATCGTGGAGTTCGCCAAGCGCCTGCCCGGCTTCACCGCGCTCAGCATCGCCGATCAGATCACGCTGCT
CAAAGCCGCCTGCCTGGACATCCTGATGCTGCGGATCTGCACGCGCTACACCCTCGAGCAGGACACCATGACCTTCTCG
GACGGGCTGACGCTGAACCGCACGCAGATGCACAACGCCGGCTTCGGGCCGCTCACAGACCTGGTGTTCGCCTTCGCCG
GGCAGCTGCTGCCGCTGGAGATGGACGACACCGAAACCGGGCTGCTGAGCGCCATCTGCCTCATCTGCGGGGACCGGCA
GGACCTGGAGGAGCCCGAGCAGGTGGAGCGGCTGCAGGAGCCGCTGCTGGAGGCGCTGAGGGTTTACGCGCGGCGGCGG
CGGCCGTCGAAGCCCCACATGTTCCCCAGAATGCTGATGAAGATCACCGACCTGCGCGGCATCAGCACCAAAGGCGCTG
AGCGTGCCATCACGCTGAAGATGGAGATCCCGGGCCCAATGCCGCCCCTGATCCGGGAGATGCTGGAGAACCCCGAGAT
GTTCGAGGAGGAGCCCCCCCCGGACCCCCCCGCAGCCCCCGCCTCGCCCTAGGCCGGGGGAAGCCCCCCCCCCCGCCTC
TGCTGCCTTCCGGCCCCCCCGCTGCCGCAGCGCTCTGCTTTTTGGGGGGGCTCCGAGACTGACGGAGCGGGGGGGGGGC
GGT
CitationBayha E, Jørgensen MC, Serup P, Grapin-Botton A. Retinoic acid signaling organizes endodermal organ specification along the entire antero-posterior axis. PLoS One. 2009 Jun 10;4(6):e5845.
Copyrighthttp://creativecommons.org/licenses/by/2.5/
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc#X73973)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
Area Opaca
 
7-11
stage 11
stage 11
stage 11
stage 11
stage 11
Anterior Intestinal Portal
Gut
Neural Plate/Tube
Somatic Mesoderm
Splanchnic Mesoderm
 

Mouse

Emage
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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