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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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DMBX1
diencephalon/mesencephalon homeobox 1

Gene

Official Symbol	DMBX1
Official Full Name	diencephalon/mesencephalon homeobox 1
CGNC ID	7944
also known as	diencephalon/mesencephalon homeobox protein 1\|paired-type homeobox Atx
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_422451
Polypeptide	XP_422451

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	127343	ENSG00000197587		MIM:607410
Mouse	140477	ENSMUSG00000028707	All phenotypic alleles (6):Targeted, knock-out(1) Targeted, other(5)	MGI:2153518
Xenopus	100493907			486745
Zebrafish	142987, 550288	ENSDARG00000009922, ENSDARG00000002510	ZDB-GENE-020117-1, ZDB-GENE-050417-97	ZFIN:ZDB-GENE-020117-1, ZFIN:ZDB-GENE-050417-97

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395271
Ensembl Gene	ENSGALG00000010436
KEGG	gga:395271

Entry 1

GEISHA Id	DMBX1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AGCACTATGGGGTGAACGGATAC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGAAGGAGGAGTAATGGACCAAGTTG	cDNA Template Length	839
Forward cDNA Template Probe	show GGTAGCTGCCAGGTGCTGGCGGAAATTGCTCCTGCAGGCGGAAGAGGCTCAGGGGTGAGGAGGAAGTAGGAGTGAGTTT GAGCCAGGCCACTGCTAGATGAAGGAGTCACGGTCGCGCTGATGGGAGACTCTGATTTTGGGCTCGCTCTCTTGCAGTT CAAAGCCTTGCCGTCCACACCAGGACTCTTGTCCACTTTAGCCTCATCCAAGGTGCTCTTAAACTCCTCCTCTCTGTCA GTCTGGTCCTCAGGCGCTGATTCACTGGCTGACTGCTCCGACAGGGTTAGGTTGAGGTCTGTGCTCACCTCACTTGGGA TGCTCTGAGTCTTCTCAGTGTCAGGTATTGTGGACTGGGTCTCCAGCACAGGTGGTTCCGTCTTCCCCTCACTGTGGCT GCTTTCACAGTCCTTCTGCTTCTGCAGCTGCTCCTTCTGGAGGCTACGCTGCTTCTTCCGGAATTTGGCCCTTCGGTTC TTGAACCAAACCTGGACTCTGGCTTCAGGCAGATTTGTGCACATAGCCAGCCGCTCTCTCATCACTACATCTGGATAGT GTGTCTTCTGGAAGGTCTTCTCCAGTGCCTCCAGCTGTTGGGCAGTGAAGGCCGTGCGACTTCGCCTTTGTTTGCGGTG CTGGGATCCATAACGTGCCTCCAAAATGATGTCATCCAATCTCTCNGCCANGNTGATGNCGTGCACTGAGNGCCNGTAC TCTGNCGCNTGCTNTGCTTGCTNGNCTGCCTGCTGNTGCANGTTGTACATGGCNCTCATTNANTTCATGNCATGCAAGN ANTATCCATTCACCCNNTANTGC

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Ectoderm
Headfold
Lateral Plate Mesoderm

precursor heart field

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

stage 12

Ectoderm
Headfold
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Somites

Dorsal view.
Ventral view.
precursor heart field

13-18

stage 18

Forebrain
Hindbrain
Midbrain
Nasal Placode/Nerve
Oral Pharynx

19-24

stage 19

stage 21

stage 23

stage 24

Diencephalon
Hindbrain
Midbrain
Nasal Placode/Nerve
Oral Pharynx
Pituitary (Rudiment)

Rathke's pouch

Entry 2

GEISHA Id	ATX.Ohuchi.2010	Data Source	Publication
Complete cDNA Template Probe	show GGTGTGAACGGATACTCCCTGCATGCCATGAACTCACTGAGCGCCATGTACAACCTGCACCAGCAGGCAGCCCAGCAAG CACAGCACGCGCCCGACTACCGGCCCTCAGTGCACGCCCTCACCCTGGCGGAGAGACTGGCTGGCTGTACATTTCAAGA CATCATTTTGGAGGCACGTTATGGATCCCAGCACCGCAAACAAAGGCGAAGTCGCACGGCCTTCACTGCCCAACAGCTG GAGGCACTGGAGAAGACCTTCCAGAAGACACACTATCCAGATGTAGTGATGAGAGAGCGGCTGGCTATGTGCACAAATC TGCCTGAAGCCAGAGTCCAGGTTTGGTTCAAGAACCGAAGGGCCAAATTCCGGAAGAAGCAGCGTAGCCTCCAGAAGGA GCAGCTGCAGAAGCAGAAGGACTGTGAAAGCAGCCACAGTGAGGGGAAGACGGAACCACCTGTGCTGGAGACCCAGTCC ACAATACCTGACACTGAGAAGACTCAGAGCATCCCAAGTGAGGTGAGCACAGACCTCAACCTAACCCTGTCGGAGCAGT CAGCCAGTGAATCAGCGCCTGAGGACCAGACTGACAGAGAGGAGGAGTTTAAGAGCACCTTGGATGAGGCTAAAGTGGA CAAGAGTCCTGGTGTAAGNGACGGCAAGGCTTTGAACTGCAAGAGAGCGAGCCCAAAATCAGAGTCTCCCATCAGCGCG ACCGTGACTCCTTCATCTAGCAGTGGCCTGGCTCAAACTCACTCCTACTCCTCCTCACCCCTGAGCCTCTTCCGCCTGC AGGAGCAATTCCGCCAGCACATGGCAGCTACCAACAACTTGGTCCATTACTCCTCCTTCGAAATGGGGACACCGTCTGC CATGCCCTACTTGGGCATGAATGTTCAACATTGGCGCCT
Citation	Ohuchi H, Fukui H, Matsuyo A, Tomonari S, Tanaka M, Arai H, Noji S, Aoki J. Autotaxin controls caudal diencephalon-mesencephalon development in the chick. Dev Dyn. 2010 Oct;239(10):2647-58.
Copyright	Copyright © 19992011 John Wiley & Sons, Inc. All Rights Reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #AF461038)

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 17

Midbrain

19-21

stage 21

Diencephalon

Entry 3

GEISHA Id	DMBX1.Ferran.2007	Data Source	Publication
Complete cDNA Template Probe	show `TGTGAAAGCAGCCACAGTGAGGGGAAGACGGAACCACCTGTGCTGGAGACCCAGTCCACAATACCTGACACTGAGAAGA CTCAGAGCATCCCAAGTGAGGTGAGCACAGACCTCAACCTAACCCTGTCGGAGCAGTCAGCCAGTGAATCAGCGCCTGA GGACCAGACTGACAGAGAGGAGGAGTTTAAGAGCACCTTGGATGAGGCTAAAGTGGACAAGAGTCCTGGTGTAAGNGAC GGCAAGGCTTTGAACTGCAAGAGAGCGAGCCCAAAATCAGAGTCTCCCATCAGCGCGACCGTGACTCCTTCATCTAGCA GTGGCCTGGCTCAAACTCACTCCTACTCCTCCTCACCCCTGAGCCTCTTCCGCCTGCAGGAGCAATTCCGCCAGCACAT GGCAGCTACCAACAA`
Citation	Ferran JL, Sánchez-Arrones L, Sandoval JE, Puelles L. A model of early molecular regionalization in the chicken embryonic pretectum. J Comp Neurol. 2007 Dec 1;505(4):379-403.
Copyright	Copyright © 19992012 John Wiley & Sons, Inc. All Rights Reserved.
Comments	The sequence below was obtained from NCBI (acc #: AF461038 - Showing 410 bp region from base 418 to 827) using the information provided in the publication Primers are given in the methods.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-23

stage 23

Diencephalon
Mesencephalon
Neural Plate/Tube

Entry 4

GEISHA Id	DMBX1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCTCCCACTGTGTTCATACACCATGAATTATATGGTTCCTTGACAAAACCACGATTAATGCAAGCTGTTCTTAGAAAAA CGCTCCGATCACCAAATTCTACCCTCAAGCTGTGCAGCTTCAGACCCTGCTTAGCAAGTGAGAATGTAACAAGTGAAAA ATGCTGCAATGCTGGAGGCCAAGCGGGGTGATAATCGAGGGCTTTCTATTCCCTGCAGCGAGGAGTAGATTGGCTTGCC AAAAGTACCATGTCCCCAAGCAACCAAAACTCACCAACTGCAAAGTGATTTCAGTCCACAGTTTTGGCCTCATTTCTCT GGAATGACCCTTCATTTTAGTAATCCACCCAGAGTGTTTTTCCTTCTTGAGAAGCGACTTTTCTACCAACCCAAAGGAC TTTTTTATTTATCTTCTCCAAACCAAATAAATCCTTTGAACTCACCGTACCAAGAAGCAGGGAGGGAGGAAACCCAGAT CTAATCTAGTATTGCCTAGGACCAAAAATGCAGACTGGCTCTGTGGCAGGTGCTAGGTTGGAATCCAAAGGGTGTCAGG CGGGTCTGCCACTAACACGCAGCAGAGCTGGGCTAATTCACTGCAGGCCATCATCTGGTCCCTGCTCGATTTAAAGAAG AAATGGAGAGGCAACGTGTGCATAGCCTACATAACTTCTTGCTCCCATCTTACTTCATACCAATGCAGAAGCCGTGGGT TGAGTTACCTCTTTAAACACGAGGGGGAAAGGGTGTTTTCAACTGCAATAATGCATCTTAAAAAAGCATCTAAAATCCC TTAAACTGAGGCATAAGAATAGCCAAATGTGGTGGGAAATGATGCTTTATCCTCTTAAAATGGAGCCAGAAACGGAAGG GCAGTCATCGACGCACAACTTTCAAGGTAAATGGAACATCTTCCCTA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.