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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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NPAS2
neuronal PAS domain protein 2

Gene

Official Symbol	NPAS2
Official Full Name	neuronal PAS domain protein 2
CGNC ID	12580
also known as	MOP4, neuronal PAS domain-containing protein 2\|bHLH-PAS clock protein\|bHLH-PAS transcription factor MOP4\|member of PAS protein 4\|neuronal PAS2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_001030542
Polypeptide	NP_001025713

Gene Expression

In Situ Hybridization

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	4862	ENSG00000170485		MIM:603347
Mouse	18143	ENSMUSG00000026077	All phenotypic alleles (2):Targeted, other(2)	MGI:109232
Xenopus				985238
Zebrafish	352934	ENSDARG00000016536	ZDB-GENE-030408-3	ZFIN:ZDB-GENE-030408-3

Gene Ontology

Molecular Function	DNA binding, protein dimerization activity, sequence-specific DNA binding transcription factor activity, more...signal transducer activity
Biological Process	rhythmic process, transcription, DNA-templated
Cellular Component	cytoplasm, nucleus, transcription factor complex

Links to other databases

Entrez Gene	395433
Ensembl Gene
KEGG	gga:395433

GEISHA Id	NPAS2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GACAGGGCAAAGAGGGCTTCG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGGGGACAGAGAGGTGGAGGGGC	cDNA Template Length	1900
Forward cDNA Template Probe	show ATGGGTGNGGGGAAGATTTGGTGAGCTCCTGGATGACACTGAGGGTGTCCGGCTAGCACTGAGGATTGAGGCACCAATA TCAAGCGCATTAAAGTGCTGTTCAGGATCCAAGCTGGAGCCACTGTCCTTTAGTGCTGAGGACACAACCTCTGAGGACA CTTCTTCCAAGCCCATCTCCTGTCTCCTCTCCACCCGCACATCTGCATAACTTACCACCATGTGTGTGCACACGATGAA CTCTGGCTTGGAGTTCCACTGGTGGTATGTGATATAGTAATGGGTCTGGAGCCAGATCCACTGCTGTCCTTTGGTCAGA AACCGATAGCAGCACGACTTCCCCTTGCCAAACTGCATCAAGTGTTCATGGCACCTTGCAAGCAGCTCTAGGTCATCTA TATGGTAATAGTCGTAGCCAGAAGTACCCAGCACTTCAAAAGGCAAGTATCCTATGATCGGCGGTGCTCTGTGATCCAG GAATAAAAATTTCCATTCCAGACTGTGTCTTGACGTGAATTCCTCTAGAGGCTCTTCCACGATGCACATCTCCTTTAAA AACTGAGGCGTTGCCAAACGAACAGTGGCGACAAAGCAGATCTGCTTTCCTGGTGATGCTCTGTAAGCCCTGGGAACAG CCTCATCAAGNCCATTGCA
Comments	no expression detected stages 4-12

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

stage 16

Forebrain
Heart
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Spinal Cord

19-24

stage 21

stage 21

stage 24

Eye
Foregut
Head Mesenchyme
Heart
Nasal Placode/Nerve
Pharyngeal Arches and Clefts
Spinal Cord
Tail

Mouse

Emage	MGI:109232
MGI GXD	MGI:109232

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN	ZDB-GENE-030408-3

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