GEISHA - A Chicken Embryo Gene Expression Database
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FOXC1
forkhead box C1

Gene
Official SymbolFOXC1
Official Full Nameforkhead box C1
CGNC ID49514
also known asCFKH-1, forkhead box protein C1|winged helix protein CWH-6|winged-helix transcription factor
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_205006
PolypeptideNP_990337
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395856
Ensembl Gene
KEGGgga:395856

Entry 1

GEISHA IdFOXC1.Bailey.2006Data SourcePublication
Complete cDNA Template Probeshow
GAAGTTTTCCCAATGCTTCCTTAAGCGGCCGGCGCAAGAGACTGAGAAAAGGTGACGCGGGGGCCCGGGAAGGCGGCCG
GCGCGCTGCCCCCGCCCCTGGTTATTTGGCCGCCTTAGCCAGCAGCCCCGAGCAGTGTCTCCTGGAAGGCGCAGGCAGT
GGCGAGCAGGGCGCCTTATTTTTTTTATTTGTTTTTGTTTTTTTTTTTTTTTAATTTTTTTTTAACTTTTGTCTCTTTT
TTTGCCCCGACTGCGCCTGGAAGTTGATCCGAACGTTCCTCCGAGGCGGCTTGCAGCGTCCTGGTCTGGCCCTCTCCGG
GTGCAGCGACCCTCCCTCGCCGCCCGCGCGGGAACTGAGTGGGCTGCGAGGCGCCAGGCGAGCGCAGGGAGAGGCCGAG
CGGCCCAGGGCGCAAGGAGGCGGCCGCGGCCGGGACAGACGCAGCGCGGAGGGGCCCGCGGTAGCTCGGCGCGGCCCGG
ACTCGGACTCGGCGGCCGGTGCGGCGCGGCCCGGCCCGAGCGAGGGTGGGGGGCGGCGGGCTGCGCCTGGCGGCGGCGA
GCCGGGGCCATGCAGGCGCGCTACTCGGTGTCCAGCCCCAACTCCCTGGGAGTGGTGCCCTACCTCGGCGGCGAGCAGA
GCTACTATCGCGCTGCCGCGGCGGCGGCCGGGGGCGGCTACACCGCCATGCCGGCCCCTATGAGCGTGTACTCGCACCC
TGCTCACGCCGAGCAGTACCCGGGCAGCATGGCGCGCGCCTACGGGCCTTATACGCCGCAGCCGCAGCCCAAGGACATG
GTGAAGCCGCCCTACAGCTACATCGCTCTTATCACCATGGCCATCCAGAATGCCCCGGACAAGAAGATCACTCTGAATG
GCATCTACCAGTTCATCATGGACCGCTTCCCCTTCTATCGGGACAATAAGCAGGGCTGGCAGAACAGCATACGGCACAA
CCTCTCGCTCAACGAGTGCTTCGTCAAGGTGCCCCGCGACGACAAGAAGCCAGGCAAGGGCAGCTACTGGACGCTCGAC
CCGGACTCCTACAACATGTTCGAGAACGGCAGCTTCCTGCGGCGGCGGCGGCGCTTCAAGAAGAAGGACGCAGTGAAGG
ACAAGGAGGAGAAGGGCCGGCTGCACCTCCAAGAACCGCCACCGCCGCAGGCCGGCCGCCAGCCCGCGCCCGCGCCCCC
GGAGCAGGCCGAGGGCTCCGCTCCCGGGCCACAGCCGCCGCCCGTGCGCATCCAGGACATCAAGACGGAGAACGGTACG
TGTCCCTCGCCTCCCCAGCCCCTGTCCCCGGCTGCCGCCCTAGGCAGCGGCAGCGCCGCCACAGTGCCCAAAATCGAGA
GCCCCGACAGCAGCAGCAGCAGCTTGTCGAGCGGGAGCAGCCCCCCGGGCAGCCTGCCGTCGGCGCGGCCGCTCAGCCT
GGACGCTGCAGAACCCGCGCCGCCGCCACAGCCTGCGCCGCCGCCGCATCACAGCCAGGGCTTCAGCGTGGACAACATC
ATGACGTCGCTGCGGGGGTCGCCGCAGGGTTCGGCCGCTGAGCTCGGTTCCGGCCTCCTGGCCTCGGCGGCTGCGTCCT
CGCGCGCGGGCATCGCGCCCCCGCTGGCGCTGGGTGCCTACTCTCCGGGCCAGAGCTCCCTCTACAGCTCCCCCTGCAG
CCAGAGCTCCAGTGCGGGCAGTTCGGGCGGCGGGGGTGGCGGCGGCGGCGGAGGCGGCGGCAGCAGCAGCGCTGCGGGT
ACGGGGGGCGCCGCCACTTACCACTGCAACCTGCAGGCTATGAGCCTGTACGCGGCGGGCGAGCGTGGCGGCCACTTGC
AGGGTCCGGCGGGAGGCGCGGGCAGCGCGGCGGTGGACGACCCCCTGCCCGACTACTCGCTGCCTCCAGCGACCAGCAG
CAGCTCTTCGTCCCTGAGTCATGGCGGGGGCGGCCAGGAGGCCAGCCACCACCCTGCATCCCACCAGGGCCGACTCACC
TCGTGGTACCTGAACCAGGCAGGTGGAGACCTGGGCCACTTGGCGAGCGCGGCGGCGGCTGCGGCGGCCGCAGGCTACC
CTGGCCAGCAGCAGAACTTCCACTCGGTGCGGGAAATGTTCGAGTCTCAGCGGATCGGCTTGAACAACTCCCCGGTGAA
TGGGAATAGTAGCTGTCAGATGGCTTTCCCTGCCAGTCAGTCTCTGTACCGCACGTCGGGGGCTTTCGTCTATGACTGT
AGCAAATTCTGACCCTATTCCCGGCACTCTTAGAGCCAAATGGAATGGAACCCCAGAGCAGGAACAGTAAAAGAATCCA
GCAATGCAAAATCGAAACTAAAAACATACAAATTTTAAAACTTGAGAAGATTCCTCACACCAGCGAACAGAATCTCTCC
TGAAATTCAGCTCACCAGCATCAGCTCAAAGAAAACCTATTTTCCTAAAAGATTAATGCAGAACCTCCTCCATTTTTGC
CTTATCTAAGTAAGCAAAACCGTAAACTATTTTGTACAGACAACAAAATCATGGTTTATTAAAGGACAGTTTACTCCAG
ATACCACGTAAGTTTCTTGCGTTCAGAGACTCGCTTTCCTGCTCATTCGTCTTGCCCCTCTGCCTCTGCCTTGCCTCTC
ACCTGTAAGATATTTTATCCTATGTCGAAAGAACGGGAAAGTACCTGTTTATGAAAATCGCTTTCTTTTTATTCATGGA
CTTGTTTTTAAATGTAAATTGCAACATAGTAATTTATTTTTAATTTGTAGTTGGATGTTACGGACCAAACACCAGAAAG
TGTTCCAAAAGCTTTTCAAGTTAAATTGCCTGAAACTTTTAAAATGTGCCTTTTCTCTCATTATAAAAAGGGAAACTGT
ATTAATCTCCTTCTATCATCCTTTTCTTTTTGTTGATCATATCCATTGTTTGTTTATTAATAAATTGCCATTCAGTTTG
AATAAGACCTATATGTCTGAATACTTTAATACAGCTTTAATAGAAAAGATTTCAGAGCGGAAATTGTAGGAGTTCCCTA
GTCTCTGTCAGATTTTTTAAATGTGGAGAAAACTTCTAGGTGATGTCAAATTTCGCTAAACTCAGTTTTTAAAATTGTT
AAGTAGATTTTTTTTCCCCCTACAGCGTTTTCTGCAAAACATACTATCTAGTCAACTTGCTTTGTGGCTATTAAAAGGA
TAATTTCCTAAGTAGATCTGAGTTGGCACATGAACAAATACTTTTCTTCAGTAACTACAGAACATGATTTGGCGATTTT
TAAGTCCATGAATCAGCACCAGTGTTACCACAGTGGTGCCTGTACGCAGAGAAGCAAATGTACCCGGAGATACTAACAG
ATGGAGATCAGCCTATGTGTCCCACATAGATTGCAATGAGTATTATACGTACCTGTGAGCCAGATGCCAAATAGTTTTT
TTTCTATTAATTTCATTCCTTTCTTAGAGGAGAAGTAAACTAGTTTTAAAATGTATGTATATAACTCACTCACAGTTAC
AATTCTTTATGCATTACACAGAAGGATTAAATTTTTAAAAATACAAATATACTGTGGGTTGGAAATAGATATTTAATCT
TGGGGAAACTTTTAGAAGATATATTTGTAGAACAATTTGTTTTTGAAGACTTACAGCAATAACCAGAAGGAAGAGTAAG
AAGGCAGGAAAAAAAAAAAAAACATTAGTCTGGGGTGGTTTCTTTTCAAACCAATTTTTCTTGTTAATTTACAGTTAAA
CCTAGGGGGCAATCCGGATTGGCCCTCCCCCCTTTTGTAAATAACCCAGGAAATGTAATAAATTCATTATCTTAGGGTG
ATCTGCCCTGTCAATCAGACTTGGGGAGATGGCGGTTTGATTACAGATATTCAGGCCTTCAGTTTGTTTTCGAGATAAA
GCAGGTTCCTATCTGCCGCTCCTATCTAGAGGCAACACTTAAGCAGTAATTGCTGTTGCTTGTTGTCAAAATTTGATCA
TTGTTAAAGGATTGCTGCAAATAAATACACTCTAATTTCA
CitationBailey AP, Bhattacharyya S, Bronner-Fraser M, Streit A. Lens specification is the ground state of all sensory placodes, from which FGF promotes olfactory identity. Dev Cell. 2006 Oct;11(4):505-17.
CopyrightCopyright © 2006, Elsevier
CommentsInsufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below is for mouse and was obtained from NCBI (NM_008592).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
Ectoderm
Eye
Lens
 

Entry 2

GEISHA IdFOXC1.Anderson.2020Data SourceDirect Submission
Complete cDNA Template Probeshow
CAATTCGAGCTCGCTACCTCAACCAGGCTGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGAGCTGGGCTACG
CGGGGCCGCAGCAGAGCTTCGCCGCCGGTCCGCGGGACGTCTTCGAAGCGCCGCGGATGGGGCTCAGCGCCTCGCCCGG
AGGCGGAGGAGGCGGCGGCGGAGGCAACGCGGGGAGCGGCGGCGGCGGTGGAGCGGGGGGCGGCGGCAGCTGTCAGATG
GCGTTCCCCGGCAGCCAGCCGCTGTACCGCGCCTCCGGGGCCTTCGTCTACGACTGCGGCAAGTTCTGAGCGCGGCCCG
CCGCCCGCCGCCCGCGTGCGGGGCGGTGAGAGGCCGGCGGCGCCCGCTCCCACGTAAGTGTCGCTTTCTTTGGTCGATC
GCTTCCCAGCAGCGCTCTCCCCCCGCGCCCCGTCCCGTGAGGTATCGCCGCGCCCCGCTTCCGCACCCCCCACCCGCCC
TCCTCCCCCCCCCTCCTCCTTTCCACCCGGACAAGGACTTGTTTGAAAGTGTAAATTGCCACATAGTAATTTATTTTTA
ATTCGTAGTTGGATGGTGCGGACCAAACGCCACAAAGTGTTTCCCCCTACCCCGGGAAGGGTCGTTAACACGGACTGAA
ACGCTGATTTATTTTTTTTTTTTTCCACTCCATATAGACAAAAAAAAAAAAAAATCTAGAGTCGACCTGCAGGCATGCA
AGCTTTTGT
CommentsImages and probe sequence provided by Claire Anderson.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
Area Opaca
Early Mesoderm
Ectoderm
Epiblast
Primitive Streak
 
7-12
stage 7
stage 7
stage 10
stage 12
Anterior Intestinal Portal
Area Opaca
Blood Islands
Ectoderm
Head Mesenchyme
Headfold
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
 
13-14
stage 14
Head Mesenchyme
Lens
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somites
 

Mouse

Emage
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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