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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ESR1
estrogen receptor 1

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	ESR1
Official Full Name	estrogen receptor 1
CGNC ID	9821
also known as	estrogen receptor\|ER\|ER-alpha\|estradiol receptor\|estrogen receptor, alpha\|nuclear receptor subfamily 3 group A member 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205183
Polypeptide	NP_990514

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	2099	ENSG00000091831	MIM:133430	MIM:133430
Mouse	13982	ENSMUSG00000019768	All phenotypic alleles (22):Targeted, knock-out(6) Targeted, other(16)	MGI:1352467
Xenopus	394461, 398734, 398733			482192
Zebrafish	259252	ENSDARG00000004111	ZDB-GENE-020806-5	ZFIN:ZDB-GENE-020806-5

Gene Ontology

Molecular Function	estrogen receptor activity, sequence-specific DNA binding, more...
Biological Process	transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	396099
Ensembl Gene	ENSGALG00000012973
KEGG	gga:396099

Entry 1

GEISHA Id	ESR1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	5’-AGCCTGGCAGGATTTCACTC-3’
Reverse cDNA Template Primer	5’-AATTAACCCTCACTAAAGGGCCCAGTTGATCATGTGCAC-3’	cDNA Template Length	806
Complete cDNA Template Probe	show AGCCTGGCAGGATTTCACTCTCTGAACAATGTCCCACCAAGCCCAGTGGTGTTCTTGCAAACGGCACCCCAGCTCTCAC CCTTCATCCATCACCACAGCCAGCAGGTACCCTACTACCTTGAAAATGAACAGGGCAGCTTTGGGATGAGGGAAGCTGC TCCTCCAGCCTTCTACAGGCCAAGCTCTGATAATAGGCGCCACAGCATTCGTGAGAGGATGTCTAGTACCAATGAGAAA GGGAGCCTGTCCATGGAGTCCACCAAGGAGACCCGGTACTGTGCTGTGTGCAACGACTATGCTTCAGGCTACCACTATG GGGTCTGGTCTTGTGAGGGCTGCAAAGCTTTTTTCAAAAGAAGTATTCAAGGGCACAATGACTACATGTGTCCTGCCAC TAACCAGTGTACTATTGACAAGAACAGAAGAAAGAGTTGCCAGGCCTGCCGACTAAGAAAATGCTATGAAGTGGGAATG ATGAAAGGTGGAATCCGGAAAGACCGCAGAGGCGGCGAAATGATGAAACAGAAACGTCAAAGAGAGGAACAGGATTCCA GGAACGGGGAGGCTTCTTCTACAGAGCTGCGAGCTCCAACCCTTTGGACAAGTCCACTGGTGGTTAAACATAACAAGAA GAACAGTCCGGCTCTGTCTCTGACAGCAGAACAGATGGTCAGTGCCTTGCTGGAAGCTGAGCCACCTATAGTTTATTCT GAATATGACCCCAATAGACCATTCAACGAAGCATCTATGATGACCCTGTTGACCAACCTTGCAGACAGAGAATTAGTGC ACATGATCAACTGGGC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Unlabeled

13-18

stage 16

stage 17

Unlabeled

19-24

stage 21

stage 22

Head Mesenchyme
Leg Mesenchyme
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme

stage 25

Foregut
Gonad
Head Mesenchyme
Hindgut
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord

Entry 2

GEISHA Id	ERALPHA.Carré-Eusèbe.2009	Data Source	Publication
Complete cDNA Template Probe	show TCTCCCTTTCCAGTGCTCACCCTGCATTTGTTAGTATACTCCTGCTTGCCGAGATCAGAGGAATACCTATGTATTGCTG CTTTAACATGATTTCTGCTGAGCCTCAGAATAGGTTCTGGTGTTTTTTTTAGGTGGACTGCCAGCTGCCGATCTTGCTG TTGACAGTAAAAGCAGATATGTTCCTTGCTCACTGCCATTAGCAATGACCATGACCCTTCACACCAAAGCCTCTGGAGT TACCCTGCTGCACCAGATTCAAGGCACTGAGCTGGAGACTCTGAGCAGACCTCAGCTGAAGATTCCCCTGGAACGATCG CTCAGCGACATGTACGTGGAAAGCAACAAGACAGGAGTTTTTAACTACCCAGAAGGGGCCACCTACGATTTTGGTACTA CCGCTCCAGTGTACGGCTCTACTACACTCAGTTATGCCCCTACTTCTGAATCTTTTGGGTCAAGCAGCCTGGCAGGATT TCACTCTCTGAACAATGTCCCACCAAGCCCAGTGGTGTTCTTGCAAACGGCACCCCAGCTCTCACCCTTCATCCATCAC CACAGCCAGCAGGTACCCTACTACCTTGAAAATGAACAGGGCAGCTTTGGGATGAGGGAAGCTGCTCCTCCAGCCTTCT ACAGGCCAAGCTCTGATAATAGGCGCCACAGCATTCGTGAGAGGATGTCTAGTACCAATGAGAAAGGGAGCCTGTCCAT GGAGTCCACCAAGGAGACCCGGTACTGTGCTGTGTGCAACGACTATGCTTCAGGCTACCACTATGGGGTCTGGTCTTGT GAGGGCTGCAAAGCTTTTTTCAAAAGAAGTATTCAAGGGCACAATGACTACATGTGTCCTGCCACTAACCAGTGTACTA TTGACAAGAACAGAAGAAAGAGTTGCCAGGCCTGCCGACTAAGAAAATGCTATGAAGTGGGAATGATGAAAGGTGGAAT CCGGAAAGACCGCAGAGGCGGCGAAATGATGAAACAGAAACGTCAAAGAGAGGAACAGGATTCCAGGAACGGGGAGGCT TCTTCTACAGAGCTGCGAGCTCCAACCCTTTGGACAAGTCCACTGGTGGTTAAACATAACAAGAAGAACAGTCCGGCTC TGTCTCTGACAGCAGAACAGATGGTCAGTGCCTTGCTGGAAGCTGAGCCACCTATAGTTTATTCTGAATATGACCCCAA TAGACCATTCAACGAAGCATCTATGATGACCCTGTTGACCAACCTTGCAGACAGAGAATTAGTGCACATGATCAACTGG GCAAAGAGAGTTCCAGGATTTGTGGATTTAACACTCCATGATCAGGTCCATCTGCTGGAATGTGCCTGGTTAGAGATAT TGATGATCGGCTTAGTCTGGCGCTCCATGGAACACCCAGGAAAGCTTTTATTTGCACCTAATCTATTACTGGACAGGAA TCAAGGGAAATGTGTAGAGGGCATGGTGGAAATCTTTGACATGCTACTGGCTACTGCTGCTCGGTTTCGGATGATGAAC CTTCAAGGGGAGGAATTTGTGTGCCTTAAGTCCATCATCCTGCTCAATTCTGGTGTGTACACTTTTCTTTCTAGCACCT TGAAATCTCTGGAAGAGAGGGACTATATCCACCGTGTTCTGGACAAAATCACAGATACTCTGATACACCTAATGGCAAA GTCAGGTCTTTCTCTGCAGCAGCAACACCGGCGACTAGCTCAGCTCCTCCTTATCCTCTCTCACATCAGGCATATGAGC AACAAAGGAATGGAGCACCTGTACAATATGAAGTGTAAAAATGTAGTTCCGCTCTACGACCTCTTACTGGAGATGCTGG ACGCTCACCGCCTACATGCACCGGCAGCCAGGAGTGCTGCACCAATGGAAGAGGAGAACCGAAACCAACTGACAACCGC ACCAGCTTCATCTCATTCCCTGCAGTCCTTTTACATTAACAGCAAAGAAGAGGAGAGTATGCAGAATACAATATAAACA AAAGTCAGCATATAATAATGGTATGAGAAACCCAGCAGCGTACTACCTAGCTCATGCTTCATTTCATCTATAGTGCCAC ATATGTCAACACTCCAATGACATTAGCCACC
Citation	Danièle Carré-Eusèbe, Noëlline Coudouel, Solange Magre. OVEX1, a novel chicken endogenous retrovirus with sex-specific and left-right asymmetrical expression in gonads. Retrovirology. 2009; 6: 59. Published online 2009 June 17
Copyright	Copyright © 2009 Carré-Eusèbe et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205183.1).