GEISHA - A Chicken Embryo Gene Expression Database
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CLN6
CLN6, transmembrane ER protein

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolCLN6
Official Full NameCLN6, transmembrane ER protein
CGNC ID6042
also known asceroid-lipofuscinosis neuronal protein 6|ceroid-lipofuscinosis, neuronal 6, late infantile
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Sequence Information
Genomic
RNANM_001277628
PolypeptideNP_001264557
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human54982ENSG00000128973MIM:204300MIM:606725
Mouse76524ENSMUSG00000032245All phenotypic alleles (5):Spontaneous(1) Targeted, knock-out(1) Targeted, other(3) MGI:2159324
Xenopus100145280, 100127342982585
Zebrafish449809ENSDARG00000077584ZDB-GENE-041010-57, ZDB-GENE-110623-6ZFIN:ZDB-GENE-041010-57, ZFIN:ZDB-GENE-110623-6
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene415558
Ensembl GeneENSGALG00000007981
KEGGgga:415558
GEISHA IdCLN6.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-CATCACATTCGTCATGGGCG-3’
Reverse cDNA Template Primer5’-AATTAACCCTCACTAAAGGGTGCAGGGTGTAAAAAGCCC-3’cDNA Template Length568
Complete cDNA Template Probeshow
CATCACATTCGTCATGGGCGCCAGCATCCACCTGGTGGGGGACTCCGTCAACCACCGCCTCATCTTCAGTGGGTATCAG
CACCACCTGTCCGTCAGGGAGAACCCCATCATCAGGAACCTGAAGCCAGAGACGCTGATTGATTCCTTTGAGCTGCTGT
ATTACTACGACGAGTATTTGGGTCACTCGATGTGGTACATCCCCTTCTTCCTGATCCTCTTCATATACTTCACCGGCTG
CTTCACACCCAACGAGGATGAGAGCAGGATGCCAATGTCTGCGCTGCTGCTGACAGGGCCGAGCAGCCTCTATTACTGG
TACCTCGTGACCGAGGGGCAGATCTTCATCCTCTACATCTTCACTTTCTTCGCCATGATGGCTTTGGTGATGCACCAGA
AGCGCAAAGGACTGGTGCTGGACAGCAACGGGCTCTTCCTCTTCTACTCGTTCATCATCACCTTGGTGCTGATTGCTGT
GTGGGTGGTGTGGCTGTGGAATGACAAAACCCTCAGGAAGAAGTACCCTGGGGTGATTTACATCCCCGAGCCGTGGGCT
TTTTACACCCTGCAC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
Epiblast
Primitive Streak
 
7-12
stage 8
stage 9
stage 12
Ear/Otic Placode
Extraembryonic Mesoderm
Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
extraembryonic mesoderm
 
13-18
stage 18
Widespread Expression
 
19-24
stage 19
stage 20
stage 22
Ear/Otic Placode
Eye
Head Mesenchyme
Leg Mesenchyme
Lung
Mesonephros
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Widespread Expression
Wing Mesenchyme
 
25-26
stage 26
Atria
Head Mesenchyme
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Spinal Cord
faint expression

Mouse

Emage
MGI GXDMGI:2159324

Frog

Xenbase982585

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-041010-57, ZDB-GENE-110623-6
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